Wall clock time and date at job start Tue Mar 31 2020 19:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99874 * 2 1 4 4 H 1.48497 * 109.47310 * 240.00472 * 3 2 1 5 5 H 1.48508 * 109.46922 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47130 * 119.99942 * 3 2 1 7 7 C 1.38941 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00152 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00539 * 179.97438 * 9 7 2 11 11 O 1.21300 * 119.99460 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00349 * 179.97438 * 10 9 7 13 13 N 1.46504 * 109.46984 * 180.02562 * 12 10 9 14 14 C 1.34780 * 119.99541 * 180.02562 * 13 12 10 15 15 O 1.21276 * 120.00556 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99422 * 180.02562 * 14 13 12 17 17 S 1.81405 * 109.46778 * 179.97438 * 16 14 13 18 18 C 1.76207 * 102.99809 * 179.97438 * 17 16 14 19 19 N 1.31404 * 126.33906 * 359.96195 * 18 17 16 20 20 N 1.28661 * 110.29738 * 180.02562 * 19 18 17 21 21 C 1.32011 * 109.69166 * 359.97438 * 20 19 18 22 22 C 1.40956 * 133.51652 * 179.97438 * 21 20 19 23 23 C 1.35910 * 119.24290 * 180.25993 * 22 21 20 24 24 C 1.40748 * 119.86258 * 359.44259 * 23 22 21 25 25 C 1.34800 * 120.43833 * 0.60511 * 24 23 22 26 26 N 1.36357 * 126.33755 * 180.02562 * 18 17 16 27 27 H 0.97006 * 119.99928 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99472 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.47294 * 60.00119 * 12 10 9 30 30 H 1.09001 * 109.47170 * 299.99892 * 12 10 9 31 31 H 0.97001 * 120.00117 * 359.97438 * 13 12 10 32 32 H 1.08999 * 109.47421 * 60.00310 * 16 14 13 33 33 H 1.08998 * 109.47368 * 299.99370 * 16 14 13 34 34 H 1.08002 * 120.37537 * 359.97438 * 22 21 20 35 35 H 1.08003 * 120.06925 * 179.72444 * 23 22 21 36 36 H 1.08005 * 119.78198 * 180.30438 * 24 23 22 37 37 H 1.07996 * 119.77335 * 179.69472 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6966 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0888 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0026 11 8 3.2103 -3.5577 -0.0031 12 6 1.2438 -4.8629 -0.0032 13 7 2.1959 -5.9764 -0.0037 14 6 1.7466 -7.2471 -0.0048 15 8 0.5543 -7.4688 -0.0049 16 6 2.7260 -8.3924 -0.0047 17 16 1.8190 -9.9635 -0.0056 18 6 3.1077 -11.1651 -0.0062 19 7 4.3991 -10.9220 -0.0067 20 7 5.0610 -12.0253 -0.0076 21 6 4.2240 -13.0461 -0.0071 22 6 4.3991 -14.4448 -0.0080 23 6 3.3049 -15.2509 -0.0125 24 6 2.0167 -14.6839 -0.0042 25 6 1.8598 -13.3451 -0.0041 26 7 2.9496 -12.5195 -0.0074 27 1 -0.4850 0.8401 0.0004 28 1 0.3534 -2.3906 -0.0024 29 1 0.6168 -4.9201 -0.8930 30 1 0.6175 -4.9212 0.8870 31 1 3.1496 -5.7991 -0.0040 32 1 3.3519 -8.3353 0.8857 33 1 3.3532 -8.3342 -0.8942 34 1 5.3915 -14.8709 -0.0099 35 1 3.4236 -16.3244 -0.0178 36 1 1.1480 -15.3257 -0.0028 37 1 0.8664 -12.9215 -0.0027 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341881554.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:47 Heat of formation + Delta-G solvation = 17.927904 kcal Electronic energy + Delta-G solvation = -23930.371360 eV Core-core repulsion = 20028.074472 eV Total energy + Delta-G solvation = -3902.296889 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.51288 -41.09092 -39.91785 -39.16945 -36.28986 -35.40466 -35.03576 -33.39619 -32.41504 -31.74816 -30.49643 -28.76789 -26.31205 -25.25499 -24.70014 -23.82417 -21.88227 -21.42069 -20.15532 -19.84449 -18.69925 -18.44771 -17.79346 -17.74857 -17.24738 -17.19986 -17.08314 -16.40971 -16.28072 -15.92913 -15.86633 -15.63958 -15.17680 -14.64336 -14.32327 -13.97083 -13.72774 -13.56329 -13.53761 -13.42990 -13.25128 -12.90366 -12.63167 -12.54530 -12.47387 -12.22573 -12.13927 -11.56898 -11.55609 -11.35611 -10.91767 -10.57858 -10.33311 -10.09686 -9.85280 -8.54527 -8.51450 -6.01674 -0.39381 -0.35375 -0.05385 0.76006 1.32519 1.38219 1.40336 1.42481 1.43010 1.53395 1.90359 1.93834 2.30276 2.32535 3.08289 3.10509 3.15760 3.42558 3.45857 3.69650 3.85159 3.86585 4.07100 4.18521 4.21952 4.41066 4.41919 4.42670 4.63527 4.85926 4.99004 5.12101 5.14164 5.37897 5.37969 5.73975 5.90751 6.28185 6.47867 6.91464 7.03265 7.21903 7.43356 7.93971 8.64942 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.043821 B = 0.001714 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.806475 B =16331.175265 C =16949.533362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.009 4.009 3 Si 0.996 3.004 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.339 4.339 8 H 0.086 0.914 9 N -0.558 5.558 10 C 0.431 3.569 11 O -0.625 6.625 12 C 0.122 3.878 13 N -0.698 5.698 14 C 0.541 3.459 15 O -0.559 6.559 16 C -0.137 4.137 17 S 0.088 5.912 18 C 0.094 3.906 19 N -0.283 5.283 20 N -0.333 5.333 21 C 0.191 3.809 22 C -0.106 4.106 23 C -0.057 4.057 24 C -0.115 4.115 25 C 0.040 3.960 26 N -0.381 5.381 27 H 0.280 0.720 28 H 0.400 0.600 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.417 0.583 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.175 0.825 35 H 0.194 0.806 36 H 0.203 0.797 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.326 -32.629 -0.018 32.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.210 4.210 3 Si 0.819 3.181 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.469 4.469 8 H 0.104 0.896 9 N -0.193 5.193 10 C 0.218 3.782 11 O -0.513 6.513 12 C -0.005 4.005 13 N -0.352 5.352 14 C 0.326 3.674 15 O -0.439 6.439 16 C -0.289 4.289 17 S 0.315 5.685 18 C -0.276 4.276 19 N -0.127 5.127 20 N -0.179 5.179 21 C -0.061 4.061 22 C -0.127 4.127 23 C -0.082 4.082 24 C -0.136 4.136 25 C -0.081 4.081 26 N -0.062 5.062 27 H 0.090 0.910 28 H 0.234 0.766 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.256 0.744 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.192 0.808 35 H 0.211 0.789 36 H 0.220 0.780 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.293 -31.753 -0.020 31.755 hybrid contribution 0.728 0.971 -0.001 1.213 sum 0.435 -30.782 -0.021 30.785 Atomic orbital electron populations 1.69669 1.06929 1.29700 1.49106 1.26099 0.96532 1.02604 0.95736 0.84944 0.77736 0.76359 0.79044 1.19579 1.19581 1.19584 1.19699 0.92985 0.83601 1.50575 0.89620 1.41822 1.09621 1.04558 1.63322 1.20434 0.88131 0.85974 0.83680 1.90493 1.15230 1.87527 1.58064 1.20852 0.91441 0.83368 1.04874 1.45535 1.11891 1.04061 1.73679 1.19645 0.88490 0.83314 0.75999 1.90731 1.17202 1.84642 1.51308 1.23615 1.01794 0.92437 1.11006 1.85758 0.97937 0.91855 1.92982 1.26972 0.99631 0.86901 1.14129 1.74500 1.00179 1.20653 1.17383 1.74535 1.25497 0.93964 1.23880 1.23106 0.80292 0.98028 1.04708 1.20735 1.03616 0.84965 1.03372 1.21850 0.90242 1.03003 0.93077 1.21651 1.00933 0.92133 0.98888 1.22488 0.90861 0.91681 1.03068 1.43737 1.09435 1.05195 1.47851 0.91047 0.76603 0.88118 0.88123 0.74387 0.84290 0.84290 0.80774 0.78855 0.77990 0.79434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.04 13.05 21.66 0.28 -47.76 16 2 C -0.01 -0.45 5.50 84.92 0.47 0.01 16 3 Si 1.00 41.60 29.55 68.60 2.03 43.63 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.34 -18.54 9.68 84.04 0.81 -17.73 16 8 H 0.09 4.93 7.16 -2.91 -0.02 4.91 16 9 N -0.56 -27.50 5.29 -306.99 -1.62 -29.12 16 10 C 0.43 19.36 7.85 87.66 0.69 20.05 16 11 O -0.62 -31.83 15.24 -3.09 -0.05 -31.88 16 12 C 0.12 4.20 6.15 85.63 0.53 4.73 16 13 N -0.70 -21.42 5.53 -466.78 -2.58 -24.00 16 14 C 0.54 15.43 7.85 87.66 0.69 16.12 16 15 O -0.56 -18.75 15.86 -3.02 -0.05 -18.79 16 16 C -0.14 -3.17 6.08 71.24 0.43 -2.74 16 17 S 0.09 2.02 21.25 -56.49 -1.20 0.82 16 18 C 0.09 2.41 8.23 179.57 1.48 3.89 16 19 N -0.28 -8.67 11.80 -56.89 -0.67 -9.34 16 20 N -0.33 -10.00 12.28 -55.12 -0.68 -10.67 16 21 C 0.19 4.23 7.93 134.00 1.06 5.30 16 22 C -0.11 -1.22 10.11 22.39 0.23 -0.99 16 23 C -0.06 -0.21 10.06 22.34 0.22 0.02 16 24 C -0.12 -0.41 9.98 22.09 0.22 -0.19 16 25 C 0.04 0.44 10.96 83.14 0.91 1.35 16 26 N -0.38 -7.84 2.98 -352.29 -1.05 -8.90 16 27 H 0.28 13.82 8.31 -92.70 -0.77 13.05 16 28 H 0.40 18.82 7.90 -92.71 -0.73 18.08 16 29 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 30 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 31 H 0.42 12.75 7.44 -92.71 -0.69 12.06 16 32 H 0.14 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.14 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.19 -0.96 8.06 -2.91 -0.02 -0.99 16 36 H 0.20 -1.03 8.06 -2.91 -0.02 -1.06 16 37 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -78.20 350.15 1.89 -76.31 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.26 Total: 29.88 kcal Atomic # 6 Polarization: 22.08 SS G_CDS: 7.74 Total: 29.82 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -6.32 Total: -129.79 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -0.09 Total: -50.67 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -1.20 Total: 0.82 kcal Total: -78.20 1.89 -76.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341881554.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.237 kcal (2) G-P(sol) polarization free energy of solvation -78.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds