Wall clock time and date at job start Tue Mar 31 2020 19:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38064 * 126.29453 * 2 1 4 4 C 1.47395 * 126.41744 * 0.02562 * 3 2 1 5 5 O 1.21610 * 120.00158 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00199 * 179.97438 * 4 3 2 7 7 C 1.38960 * 120.00481 * 180.02562 * 6 4 3 8 8 C 1.36282 * 125.55133 * 180.02562 * 7 6 4 9 9 N 1.30476 * 115.32305 * 179.97438 * 8 7 6 10 10 C 1.30573 * 116.12951 * 359.97438 * 9 8 7 11 11 C 1.46813 * 125.38106 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99693 * 0.29482 * 11 10 9 13 13 O 1.21683 * 120.00043 * 180.02562 * 11 10 9 14 14 S 1.71070 * 125.54697 * 0.26745 * 7 6 4 15 15 C 1.41299 * 107.16355 * 180.28398 * 3 2 1 16 16 N 1.30440 * 108.02494 * 359.55891 * 15 3 2 17 17 N 1.34260 * 126.29085 * 180.02562 * 2 1 3 18 18 C 1.46500 * 125.75630 * 359.96068 * 17 2 1 19 19 C 1.50697 * 109.47346 * 89.99929 * 18 17 2 20 20 H 1.07998 * 120.00081 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00234 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00073 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00363 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46870 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47060 * 119.99864 * 23 21 19 26 26 H 1.48494 * 109.47454 * 239.99990 * 23 21 19 27 27 H 1.09008 * 109.47182 * 89.97120 * 1 2 3 28 28 H 1.08996 * 109.47071 * 209.97097 * 1 2 3 29 29 H 1.09000 * 109.46864 * 329.97770 * 1 2 3 30 30 H 0.97001 * 119.99640 * 359.97438 * 6 4 3 31 31 H 1.07998 * 122.33809 * 359.97438 * 8 7 6 32 32 H 0.97004 * 119.99647 * 179.72134 * 12 11 10 33 33 H 0.97000 * 120.00483 * 359.72961 * 12 11 10 34 34 H 1.08007 * 125.98876 * 179.70389 * 15 3 2 35 35 H 1.09003 * 109.47489 * 209.99942 * 18 17 2 36 36 H 1.09000 * 109.47156 * 329.99702 * 18 17 2 37 37 H 0.96998 * 120.00129 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3243 1.1128 0.0000 4 6 1.8863 2.5201 0.0005 5 8 0.7000 2.7878 0.0006 6 7 2.8004 3.5104 0.0010 7 6 2.3875 4.8373 0.0020 8 6 3.2108 5.9233 0.0021 9 7 2.6080 7.0805 0.0026 10 6 1.3027 7.0490 0.0025 11 6 0.4240 8.2251 0.0025 12 7 0.9557 9.4635 -0.0034 13 8 -0.7844 8.0818 0.0029 14 16 0.7630 5.3733 0.0093 15 6 3.6592 0.6497 -0.0067 16 7 3.6341 -0.6544 -0.0009 17 7 2.3017 -1.0822 -0.0005 18 6 1.8501 -2.4758 -0.0003 19 6 1.6945 -2.9537 -1.4210 20 1 1.9099 -2.2859 -2.2420 21 6 1.2760 -4.2431 -1.6728 22 7 1.0131 -5.0562 -0.6730 23 14 1.0824 -4.8352 -3.4338 24 1 1.4374 -3.7363 -4.3673 25 1 1.9810 -5.9941 -3.6680 26 1 -0.3256 -5.2458 -3.6660 27 1 -0.3634 0.0005 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 3.7466 3.2970 0.0013 31 1 4.2869 5.8325 0.0017 32 1 0.3751 10.2406 -0.0075 33 1 1.9190 9.5778 -0.0037 34 1 4.5452 1.2674 -0.0129 35 1 2.5851 -3.0959 0.5131 36 1 0.8918 -2.5472 0.5141 37 1 0.7191 -5.9634 -0.8501 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361963309.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:08 Heat of formation + Delta-G solvation = 12.862996 kcal Electronic energy + Delta-G solvation = -24839.197563 eV Core-core repulsion = 20936.681044 eV Total energy + Delta-G solvation = -3902.516520 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.50973 -41.22895 -40.68170 -39.65124 -36.33127 -35.81266 -34.65708 -33.88115 -32.89884 -30.72177 -29.17455 -28.32982 -27.01206 -25.39003 -23.86679 -23.59279 -21.85638 -21.47569 -20.47429 -19.54412 -19.04175 -18.84050 -18.14354 -17.63378 -16.87540 -16.83595 -16.68213 -16.35261 -16.18902 -15.86017 -15.74565 -15.28941 -14.91109 -14.83551 -14.72394 -14.30437 -14.15988 -13.72532 -13.61108 -13.14045 -13.01536 -12.72889 -12.50418 -12.43444 -12.33959 -11.86366 -11.85232 -11.69195 -11.35333 -10.77679 -10.76132 -10.66208 -10.33908 -10.28773 -9.70245 -9.17199 -8.39692 -6.55588 -0.82539 -0.02655 0.48517 0.71470 1.13808 1.35710 1.36385 1.39263 1.45772 1.52673 1.90428 2.16214 2.31111 2.34261 2.53431 2.93280 3.37048 3.61543 3.65429 3.89337 3.92249 4.15388 4.25153 4.43339 4.58912 4.72169 4.76364 4.86878 5.04847 5.12318 5.17526 5.47613 5.57336 5.72737 5.79344 5.95247 6.05711 6.23073 6.53085 6.53607 6.74798 6.82797 7.15832 7.21275 8.68406 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.026049 B = 0.002296 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.641938 B =12191.969039 C =12642.737469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.159 3.841 3 C -0.329 4.329 4 C 0.600 3.400 5 O -0.537 6.537 6 N -0.604 5.604 7 C -0.003 4.003 8 C -0.022 4.022 9 N -0.394 5.394 10 C -0.125 4.125 11 C 0.607 3.393 12 N -0.810 5.810 13 O -0.579 6.579 14 S 0.328 5.672 15 C 0.086 3.914 16 N -0.332 5.332 17 N -0.335 5.335 18 C 0.266 3.734 19 C -0.554 4.554 20 H 0.053 0.947 21 C 0.024 3.976 22 N -0.916 5.916 23 Si 0.970 3.030 24 H -0.272 1.272 25 H -0.274 1.274 26 H -0.270 1.270 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.440 0.560 31 H 0.215 0.785 32 H 0.418 0.582 33 H 0.421 0.579 34 H 0.235 0.765 35 H 0.034 0.966 36 H 0.053 0.947 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.534 23.740 2.124 24.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.022 3.978 3 C -0.345 4.345 4 C 0.392 3.608 5 O -0.416 6.416 6 N -0.249 5.249 7 C -0.226 4.226 8 C -0.184 4.184 9 N -0.111 5.111 10 C -0.396 4.396 11 C 0.389 3.611 12 N -0.375 5.375 13 O -0.458 6.458 14 S 0.578 5.422 15 C -0.101 4.101 16 N -0.151 5.151 17 N -0.111 5.111 18 C 0.147 3.853 19 C -0.592 4.592 20 H 0.071 0.929 21 C -0.177 4.177 22 N -0.554 5.554 23 Si 0.794 3.206 24 H -0.196 1.196 25 H -0.200 1.200 26 H -0.195 1.195 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.124 0.876 30 H 0.282 0.718 31 H 0.232 0.768 32 H 0.252 0.748 33 H 0.253 0.747 34 H 0.251 0.749 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.869 22.215 2.202 22.657 hybrid contribution 1.161 -0.085 -0.718 1.368 sum 5.030 22.131 1.484 22.743 Atomic orbital electron populations 1.20637 0.85647 1.04432 1.04289 1.21980 0.96006 0.86619 0.93201 1.19395 0.93681 0.91158 1.30253 1.17429 0.84756 0.84288 0.74377 1.90676 1.17346 1.82696 1.50869 1.42354 1.12126 1.00075 1.70390 1.23975 1.01063 0.90309 1.07264 1.22243 1.02869 0.83181 1.10107 1.66583 1.06125 1.28439 1.09949 1.27449 0.94026 0.99946 1.18169 1.16705 0.85667 0.83234 0.75475 1.43342 1.13321 1.06009 1.74784 1.90894 1.15227 1.86770 1.52957 1.85515 0.99354 0.95349 1.61959 1.24637 0.97467 0.91673 0.96333 1.77156 0.98195 1.14437 1.25333 1.49149 1.03450 1.07847 1.50668 1.19418 0.95493 0.72199 0.98192 1.21401 1.47805 0.98422 0.91552 0.92865 1.25705 0.93902 0.96047 1.02093 1.69993 1.44853 1.07619 1.32920 0.85319 0.78370 0.78221 0.78674 1.19643 1.19972 1.19536 0.89498 0.90862 0.87610 0.71813 0.76825 0.74831 0.74724 0.74902 0.94833 0.92937 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.02 9.57 71.24 0.68 -2.34 16 2 C 0.16 5.80 7.01 42.15 0.30 6.10 16 3 C -0.33 -9.87 6.13 -20.16 -0.12 -10.00 16 4 C 0.60 15.73 7.78 86.66 0.67 16.40 16 5 O -0.54 -16.62 12.37 -4.06 -0.05 -16.67 16 6 N -0.60 -10.82 5.39 -311.94 -1.68 -12.50 16 7 C 0.00 -0.06 7.10 83.11 0.59 0.53 16 8 C -0.02 -0.34 11.34 84.44 0.96 0.62 16 9 N -0.39 -7.33 10.20 -189.38 -1.93 -9.26 16 10 C -0.12 -2.77 7.42 87.12 0.65 -2.12 16 11 C 0.61 13.53 8.06 86.49 0.70 14.23 16 12 N -0.81 -10.32 8.87 -176.29 -1.56 -11.88 16 13 O -0.58 -17.19 17.76 -4.29 -0.08 -17.27 16 14 S 0.33 8.01 20.08 -56.49 -1.13 6.87 16 15 C 0.09 2.37 11.50 85.65 0.99 3.35 16 16 N -0.33 -12.78 12.50 -56.27 -0.70 -13.48 16 17 N -0.34 -14.15 3.56 -336.68 -1.20 -15.35 16 18 C 0.27 12.93 5.97 85.63 0.51 13.44 16 19 C -0.55 -29.14 9.39 25.60 0.24 -28.90 16 20 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 21 C 0.02 1.26 5.46 84.65 0.46 1.72 16 22 N -0.92 -49.75 13.29 21.45 0.28 -49.47 16 23 Si 0.97 41.43 29.54 68.60 2.03 43.46 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 28 H 0.07 2.42 7.05 -2.39 -0.02 2.41 16 29 H 0.11 3.20 6.50 -2.39 -0.02 3.18 16 30 H 0.44 4.34 7.77 -92.71 -0.72 3.62 16 31 H 0.22 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.42 3.61 8.93 -92.71 -0.83 2.78 16 33 H 0.42 3.71 8.47 -92.71 -0.79 2.93 16 34 H 0.23 3.35 7.50 -2.91 -0.02 3.33 16 35 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.05 2.56 7.02 -2.39 -0.02 2.55 16 37 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -70.96 345.30 -0.55 -71.51 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -1.14 Total: 11.01 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 6.62 Total: 13.03 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -6.79 Total: -111.94 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -0.13 Total: -33.94 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 16 Polarization: 8.01 SS G_CDS: -1.13 Total: 6.87 kcal Total: -70.96 -0.55 -71.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361963309.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.372 kcal (2) G-P(sol) polarization free energy of solvation -70.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds