Wall clock time and date at job start Tue Mar 31 2020 19:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86801 * 120.00312 * 2 1 4 4 H 1.48501 * 109.46895 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47086 * 119.99674 * 3 2 1 6 6 H 1.48491 * 109.47072 * 240.00027 * 3 2 1 7 7 C 1.40309 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99558 * 159.33536 * 7 2 1 9 9 C 1.40530 * 120.00320 * 339.34545 * 7 2 1 10 10 C 1.44188 * 123.71334 * 335.81209 * 9 7 2 11 11 C 1.32762 * 114.43297 * 179.97438 * 10 9 7 12 12 S 1.75475 * 111.36200 * 359.97438 * 11 10 9 13 13 C 1.39544 * 123.72036 * 155.51826 * 9 7 2 14 14 C 1.46244 * 125.22461 * 359.97438 * 13 9 7 15 15 O 1.21761 * 119.99968 * 359.97438 * 14 13 9 16 16 N 1.34775 * 119.99665 * 180.02562 * 14 13 9 17 17 C 1.46502 * 119.99552 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47127 * 180.02562 * 17 16 14 19 19 H 1.09004 * 109.47064 * 305.00346 * 18 17 16 20 20 O 1.42905 * 109.47445 * 65.00189 * 18 17 16 21 21 C 1.50703 * 109.47410 * 185.00213 * 18 17 16 22 22 C 1.38215 * 120.01237 * 264.99889 * 21 18 17 23 23 C 1.38227 * 120.02473 * 179.97438 * 22 21 18 24 24 C 1.38270 * 120.05054 * 0.02562 * 23 22 21 25 25 C 1.38178 * 120.02339 * 359.97438 * 24 23 22 26 26 C 1.38441 * 120.01000 * 84.72032 * 21 18 17 27 27 F 1.35100 * 120.02638 * 0.02562 * 26 21 18 28 28 H 0.96999 * 120.00259 * 174.00398 * 1 2 3 29 29 H 1.07997 * 122.78433 * 359.92679 * 10 9 7 30 30 H 1.08005 * 124.32243 * 179.97438 * 11 10 9 31 31 H 0.96997 * 120.00268 * 359.97438 * 16 14 13 32 32 H 1.08996 * 109.47568 * 300.00237 * 17 16 14 33 33 H 1.09005 * 109.46945 * 60.00480 * 17 16 14 34 34 H 0.96700 * 113.99592 * 59.99328 * 20 18 17 35 35 H 1.07998 * 119.98568 * 359.95686 * 22 21 18 36 36 H 1.08000 * 119.97460 * 179.97438 * 23 22 21 37 37 H 1.07997 * 119.98717 * 179.97438 * 24 23 22 38 38 H 1.07999 * 120.00613 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 1.2755 2.7464 -0.0006 5 1 3.0942 1.6963 1.2125 6 1 3.0942 1.6963 -1.2124 7 6 2.0079 -1.2151 0.0005 8 1 3.0358 -1.2453 -0.3295 9 6 1.3730 -2.3929 0.4303 10 6 0.2445 -2.4120 1.3276 11 6 -0.2109 -3.6264 1.6115 12 16 0.7196 -4.8663 0.7892 13 6 1.7615 -3.6723 0.0312 14 6 2.8669 -3.9730 -0.8779 15 8 3.5301 -3.0677 -1.3503 16 7 3.1507 -5.2522 -1.1936 17 6 4.2577 -5.5534 -2.1047 18 6 4.3643 -7.0678 -2.2947 19 1 4.4585 -7.5502 -1.3218 20 8 3.1909 -7.5490 -2.9534 21 6 5.5763 -7.3850 -3.1322 22 6 5.4478 -7.5550 -4.4979 23 6 6.5594 -7.8454 -5.2664 24 6 7.8009 -7.9668 -4.6700 25 6 7.9318 -7.7973 -3.3049 26 6 6.8198 -7.5006 -2.5348 27 9 6.9474 -7.3296 -1.2008 28 1 -0.4850 -0.8354 -0.0877 29 1 -0.1935 -1.5131 1.7356 30 1 -1.0473 -3.8257 2.2650 31 1 2.6221 -5.9733 -0.8176 32 1 4.0744 -5.0787 -3.0686 33 1 5.1885 -5.1733 -1.6837 34 1 3.0434 -7.1615 -3.8270 35 1 4.4784 -7.4611 -4.9646 36 1 6.4579 -7.9785 -6.3333 37 1 8.6687 -8.1942 -5.2714 38 1 8.9016 -7.8926 -2.8394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362220360.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:12 Heat of formation + Delta-G solvation = -93.476671 kcal Electronic energy + Delta-G solvation = -25335.111811 eV Core-core repulsion = 21375.771345 eV Total energy + Delta-G solvation = -3959.340466 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.09538 -39.82291 -38.40010 -37.17843 -36.29176 -33.51385 -33.01705 -31.86807 -30.85613 -29.24135 -28.06511 -25.73102 -23.81719 -22.95357 -22.34762 -21.49415 -20.12908 -19.04078 -18.23317 -17.91856 -16.99235 -16.84010 -16.31340 -15.83876 -15.53844 -15.18216 -14.79066 -14.58925 -14.40578 -14.11378 -13.83021 -13.72329 -13.58470 -13.33469 -13.03676 -12.71792 -12.28345 -12.20766 -12.08100 -11.84375 -11.62351 -11.37482 -11.28685 -11.05514 -10.70736 -10.43916 -10.39586 -10.07839 -9.73778 -9.29324 -9.14898 -8.93822 -8.52302 -8.31066 -7.76978 -7.34294 -7.31336 -4.58604 0.82129 0.89037 2.03631 2.95561 3.06192 3.11037 3.24010 3.32554 3.55750 3.68043 3.86345 3.91505 3.96918 4.18437 4.40667 4.43240 4.52024 4.64781 4.85862 4.91842 5.00372 5.09379 5.20718 5.49301 5.71135 5.74282 5.83145 5.87804 5.89975 6.05923 6.09895 6.40759 6.55929 6.77310 6.98576 7.17219 7.26746 7.28351 7.40440 7.77268 7.93902 8.41747 8.49637 8.74529 9.54102 9.77208 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015200 B = 0.002976 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.643953 B = 9406.835250 C =10450.133903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.029 3.971 3 Si 1.074 2.926 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.426 4.426 8 H 0.109 0.891 9 C 0.113 3.887 10 C -0.144 4.144 11 C -0.187 4.187 12 S -0.032 6.032 13 C -0.437 4.437 14 C 0.600 3.400 15 O -0.565 6.565 16 N -0.746 5.746 17 C 0.107 3.893 18 C 0.139 3.861 19 H 0.116 0.884 20 O -0.546 6.546 21 C -0.145 4.145 22 C -0.082 4.082 23 C -0.127 4.127 24 C -0.092 4.092 25 C -0.153 4.153 26 C 0.110 3.890 27 F -0.133 7.133 28 H 0.301 0.699 29 H 0.131 0.869 30 H 0.141 0.859 31 H 0.394 0.606 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.376 0.624 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.199 -12.599 -7.344 17.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.195 4.195 3 Si 0.896 3.104 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.456 4.456 8 H 0.127 0.873 9 C 0.102 3.898 10 C -0.177 4.177 11 C -0.321 4.321 12 S 0.223 5.777 13 C -0.555 4.555 14 C 0.397 3.603 15 O -0.449 6.449 16 N -0.400 5.400 17 C -0.018 4.018 18 C 0.079 3.921 19 H 0.134 0.866 20 O -0.352 6.352 21 C -0.147 4.147 22 C -0.100 4.100 23 C -0.146 4.146 24 C -0.110 4.110 25 C -0.172 4.172 26 C 0.091 3.909 27 F -0.112 7.112 28 H 0.115 0.885 29 H 0.149 0.851 30 H 0.159 0.841 31 H 0.228 0.772 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.224 0.776 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.281 -12.221 -7.061 16.892 hybrid contribution -0.006 -0.336 0.003 0.336 sum 9.275 -12.557 -7.059 17.133 Atomic orbital electron populations 1.70437 1.08381 1.34540 1.26723 1.27551 0.95666 1.05233 0.91051 0.83504 0.75563 0.72690 0.78680 1.19642 1.19599 1.19447 1.20975 1.02110 0.91350 1.31165 0.87302 1.17891 0.89513 0.92351 0.90018 1.21582 0.98730 0.96934 1.00449 1.24962 1.04497 0.96667 1.05984 1.82814 1.31068 1.12426 1.51344 1.22416 1.14613 0.94524 1.23985 1.16803 0.82753 0.80869 0.79889 1.90658 1.52683 1.45216 1.56293 1.45698 1.35004 1.08527 1.50756 1.21665 0.92013 0.92936 0.95217 1.20962 0.81672 0.94153 0.95282 0.86603 1.86650 1.43574 1.69165 1.35784 1.20540 0.94582 1.03825 0.95782 1.20814 0.99573 0.97707 0.91874 1.21191 0.92402 1.00571 1.00392 1.21047 0.97987 0.98265 0.93740 1.21172 0.98095 1.03208 0.94679 1.17506 0.93957 1.01730 0.77757 1.91533 1.96578 1.92739 1.30316 0.88510 0.85136 0.84112 0.77247 0.91792 0.91379 0.77589 0.84880 0.85103 0.84939 0.84545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.72 12.48 55.57 0.69 -19.03 16 2 C 0.03 0.72 5.23 -17.28 -0.09 0.63 16 3 Si 1.07 21.45 29.99 -169.99 -5.10 16.36 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.43 -11.62 8.44 -37.94 -0.32 -11.94 16 8 H 0.11 3.15 6.14 -52.49 -0.32 2.82 16 9 C 0.11 3.01 5.41 -106.21 -0.57 2.44 16 10 C -0.14 -3.43 8.19 -39.12 -0.32 -3.75 16 11 C -0.19 -3.97 11.07 28.86 0.32 -3.65 16 12 S -0.03 -0.69 22.25 -107.50 -2.39 -3.09 16 13 C -0.44 -11.18 6.51 -35.88 -0.23 -11.41 16 14 C 0.60 15.02 7.76 -13.05 -0.10 14.92 16 15 O -0.57 -15.79 14.46 5.13 0.07 -15.72 16 16 N -0.75 -14.87 5.50 -61.75 -0.34 -15.21 16 17 C 0.11 1.77 5.29 -4.04 -0.02 1.75 16 18 C 0.14 1.82 3.01 -27.88 -0.08 1.74 16 19 H 0.12 1.58 7.80 -51.93 -0.41 1.18 16 20 O -0.55 -6.82 12.94 -35.23 -0.46 -7.27 16 21 C -0.15 -1.68 5.07 -104.55 -0.53 -2.21 16 22 C -0.08 -0.76 9.30 -39.59 -0.37 -1.13 16 23 C -0.13 -1.00 10.04 -39.57 -0.40 -1.40 16 24 C -0.09 -0.72 10.04 -39.59 -0.40 -1.11 16 25 C -0.15 -1.44 10.03 -39.51 -0.40 -1.83 16 26 C 0.11 1.30 7.24 -39.42 -0.29 1.02 16 27 F -0.13 -1.79 16.57 2.25 0.04 -1.75 16 28 H 0.30 7.74 6.22 -40.82 -0.25 7.49 16 29 H 0.13 3.05 6.77 -52.49 -0.36 2.70 16 30 H 0.14 2.50 8.06 -52.48 -0.42 2.07 16 31 H 0.39 7.38 7.55 -40.82 -0.31 7.07 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.38 3.49 7.33 45.56 0.33 3.82 16 35 H 0.13 0.95 6.41 -52.49 -0.34 0.62 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 38 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 344.88 15.07 5.20 5.20 Total: -1.00 -31.59 344.88 -9.06 -40.65 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -2.98 Total: 15.80 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -3.80 Total: -15.94 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.35 Total: -34.24 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.38 Total: -22.99 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.10 Total: 16.36 kcal Atomic # 16 Polarization: -0.69 SS G_CDS: -2.39 Total: -3.09 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.59 -9.06 -40.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362220360.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.823 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds