Wall clock time and date at job start Tue Mar 31 2020 19:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86809 * 119.99570 * 2 1 4 4 H 1.48496 * 109.47148 * 240.00304 * 3 2 1 5 5 H 1.48501 * 109.46907 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47001 * 120.00250 * 3 2 1 7 7 C 1.40300 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00032 * 189.81992 * 7 2 1 9 9 C 1.40532 * 120.00416 * 9.82145 * 7 2 1 10 10 C 1.44190 * 123.71386 * 23.53471 * 9 7 2 11 11 C 1.32766 * 114.43526 * 179.97438 * 10 9 7 12 12 S 1.75476 * 111.35955 * 0.02562 * 11 10 9 13 13 C 1.39549 * 123.71863 * 203.50148 * 9 7 2 14 14 C 1.46236 * 125.22788 * 0.07021 * 13 9 7 15 15 O 1.21762 * 119.99631 * 359.97438 * 14 13 9 16 16 N 1.34775 * 120.00276 * 179.97438 * 14 13 9 17 17 C 1.46497 * 120.00212 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47049 * 179.97438 * 17 16 14 19 19 H 1.09004 * 109.46947 * 60.00056 * 18 17 16 20 20 O 1.42898 * 109.46958 * 299.99750 * 18 17 16 21 21 C 1.50704 * 109.46973 * 179.97438 * 18 17 16 22 22 C 1.38216 * 120.00809 * 94.72579 * 21 18 17 23 23 C 1.38227 * 120.02311 * 179.72053 * 22 21 18 24 24 C 1.38267 * 120.04895 * 0.55409 * 23 22 21 25 25 C 1.38178 * 120.02610 * 359.72494 * 24 23 22 26 26 C 1.38436 * 120.01268 * 274.99781 * 21 18 17 27 27 F 1.35099 * 120.02771 * 0.03074 * 26 21 18 28 28 H 0.96993 * 120.00481 * 359.97438 * 1 2 3 29 29 H 1.08001 * 122.78192 * 359.97438 * 10 9 7 30 30 H 1.07995 * 124.31782 * 180.26902 * 11 10 9 31 31 H 0.97000 * 119.99714 * 359.97438 * 16 14 13 32 32 H 1.09000 * 109.46912 * 299.99700 * 17 16 14 33 33 H 1.08995 * 109.47341 * 59.99661 * 17 16 14 34 34 H 0.96700 * 114.00325 * 299.99558 * 20 18 17 35 35 H 1.08003 * 119.99026 * 0.02562 * 22 21 18 36 36 H 1.07991 * 119.97441 * 180.28069 * 23 22 21 37 37 H 1.08001 * 119.98882 * 179.74957 * 24 23 22 38 38 H 1.08003 * 120.01264 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6179 0.0000 4 1 3.0940 1.6966 -1.2125 5 1 1.2752 2.7465 0.0006 6 1 3.0941 1.6966 1.2124 7 6 2.0080 -1.2150 -0.0005 8 1 3.0761 -1.2219 0.1590 9 6 1.3209 -2.4231 -0.2087 10 6 0.0550 -2.5163 -0.8926 11 6 -0.4292 -3.7490 -0.9863 12 16 0.6424 -4.9156 -0.2316 13 6 1.7890 -3.6648 0.2232 14 6 3.0407 -3.8899 0.9450 15 8 3.7664 -2.9497 1.2130 16 7 3.3911 -5.1381 1.3135 17 6 4.6448 -5.3635 2.0371 18 6 4.8011 -6.8563 2.3336 19 1 4.8172 -7.4131 1.3966 20 8 3.7033 -7.3007 3.1330 21 6 6.0912 -7.0883 3.0773 22 6 6.0922 -7.1453 4.4583 23 6 7.2743 -7.3639 5.1406 24 6 8.4587 -7.5142 4.4431 25 6 8.4609 -7.4518 3.0628 26 6 7.2763 -7.2387 2.3779 27 9 7.2774 -7.1771 1.0283 28 1 -0.4850 0.8399 0.0004 29 1 -0.4569 -1.6548 -1.2954 30 1 -1.3616 -4.0018 -1.4690 31 1 2.8127 -5.8870 1.1003 32 1 5.4822 -5.0241 1.4274 33 1 4.6286 -4.8071 2.9741 34 1 3.6273 -6.8473 3.9838 35 1 5.1683 -7.0240 5.0044 36 1 7.2735 -7.4128 6.2194 37 1 9.3824 -7.6808 4.9774 38 1 9.3861 -7.5697 2.5181 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362220363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:15 Heat of formation + Delta-G solvation = -88.808898 kcal Electronic energy + Delta-G solvation = -25294.811320 eV Core-core repulsion = 21335.673264 eV Total energy + Delta-G solvation = -3959.138057 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.07726 -39.79754 -38.34503 -37.09301 -35.92821 -33.44648 -33.04508 -31.85085 -30.83577 -29.16995 -28.13510 -26.00540 -23.81551 -22.92850 -22.01240 -21.43583 -19.99230 -18.76159 -18.20753 -17.72778 -16.95691 -16.81678 -15.82491 -15.79696 -15.54430 -15.32370 -15.10887 -14.63038 -14.36495 -14.29007 -13.71328 -13.63896 -13.50245 -13.30371 -12.68729 -12.44242 -12.26373 -12.13058 -12.03461 -11.75828 -11.58278 -11.39186 -11.26514 -11.11434 -10.93237 -10.45585 -10.35567 -10.13005 -9.61372 -9.27525 -9.22190 -8.91910 -8.44431 -8.26046 -7.47416 -7.11578 -7.03237 -4.51545 0.84255 0.91046 2.17965 2.98845 3.00742 3.04540 3.15776 3.26106 3.65895 3.81606 3.86488 3.90291 3.98956 4.21952 4.44924 4.45575 4.55668 4.67910 4.89327 4.94408 5.03088 5.20106 5.29218 5.51735 5.73079 5.77353 5.89982 5.92553 6.06817 6.08022 6.13586 6.57930 6.67458 6.85272 7.18176 7.21918 7.26843 7.44131 7.49232 7.71986 8.36982 8.46523 8.61546 8.79578 9.59118 9.87752 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015035 B = 0.002984 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.889148 B = 9381.390749 C =10485.269587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.068 3.932 3 Si 0.926 3.074 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.378 4.378 8 H 0.111 0.889 9 C 0.141 3.859 10 C -0.100 4.100 11 C -0.206 4.206 12 S -0.047 6.047 13 C -0.429 4.429 14 C 0.600 3.400 15 O -0.566 6.566 16 N -0.745 5.745 17 C 0.106 3.894 18 C 0.139 3.861 19 H 0.116 0.884 20 O -0.545 6.545 21 C -0.145 4.145 22 C -0.082 4.082 23 C -0.128 4.128 24 C -0.093 4.093 25 C -0.153 4.153 26 C 0.110 3.890 27 F -0.133 7.133 28 H 0.288 0.712 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.395 0.605 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.376 0.624 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.860 -11.168 7.178 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.154 4.154 3 Si 0.749 3.251 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.409 4.409 8 H 0.128 0.872 9 C 0.130 3.870 10 C -0.133 4.133 11 C -0.340 4.340 12 S 0.207 5.793 13 C -0.548 4.548 14 C 0.397 3.603 15 O -0.449 6.449 16 N -0.399 5.399 17 C -0.019 4.019 18 C 0.079 3.921 19 H 0.134 0.866 20 O -0.351 6.351 21 C -0.147 4.147 22 C -0.100 4.100 23 C -0.146 4.146 24 C -0.111 4.111 25 C -0.172 4.172 26 C 0.090 3.910 27 F -0.112 7.112 28 H 0.099 0.901 29 H 0.163 0.837 30 H 0.155 0.845 31 H 0.229 0.771 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.224 0.776 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.013 -12.272 6.999 17.316 hybrid contribution 0.084 2.163 -0.053 2.165 sum 10.097 -10.110 6.946 15.887 Atomic orbital electron populations 1.69663 1.08061 1.30443 1.32123 1.26375 0.94940 1.02552 0.91544 0.86051 0.79946 0.78367 0.80739 1.18349 1.20118 1.18280 1.20000 0.97733 0.88829 1.34332 0.87150 1.17923 0.89527 0.91767 0.87778 1.21723 0.96387 0.96077 0.99071 1.24962 1.03408 0.97014 1.08617 1.82771 1.18023 1.13846 1.64616 1.22562 1.05172 0.95643 1.31453 1.16857 0.84598 0.81065 0.77738 1.90653 1.54000 1.41650 1.58599 1.45700 1.22768 1.09727 1.61740 1.21657 0.89067 0.93485 0.97727 1.20965 0.82182 0.95131 0.93806 0.86603 1.86645 1.49058 1.65592 1.33829 1.20548 0.95090 1.03831 0.95214 1.20819 0.98992 0.97791 0.92354 1.21188 0.92284 1.00628 1.00465 1.21043 0.98651 0.98268 0.93113 1.21169 0.97130 1.03573 0.95302 1.17501 0.94168 1.02165 0.77119 1.91531 1.97229 1.93621 1.28798 0.90053 0.83732 0.84490 0.77077 0.91340 0.91842 0.77570 0.84869 0.85127 0.84970 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.95 10.81 55.57 0.60 -18.35 16 2 C 0.07 1.66 5.39 -17.28 -0.09 1.57 16 3 Si 0.93 18.68 29.57 -169.99 -5.03 13.66 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.38 -10.31 8.51 -37.94 -0.32 -10.64 16 8 H 0.11 3.16 6.04 -52.49 -0.32 2.84 16 9 C 0.14 3.82 5.68 -106.21 -0.60 3.22 16 10 C -0.10 -2.47 9.04 -39.12 -0.35 -2.82 16 11 C -0.21 -4.55 11.07 28.86 0.32 -4.23 16 12 S -0.05 -1.04 22.25 -107.50 -2.39 -3.43 16 13 C -0.43 -11.07 6.51 -35.88 -0.23 -11.30 16 14 C 0.60 15.00 7.76 -13.05 -0.10 14.90 16 15 O -0.57 -15.69 14.45 5.13 0.07 -15.61 16 16 N -0.75 -14.83 5.44 -61.76 -0.34 -15.17 16 17 C 0.11 1.75 5.32 -4.04 -0.02 1.73 16 18 C 0.14 1.82 3.07 -27.88 -0.09 1.73 16 19 H 0.12 1.58 7.79 -51.93 -0.40 1.17 16 20 O -0.55 -6.85 12.74 -35.23 -0.45 -7.30 16 21 C -0.15 -1.68 5.07 -104.55 -0.53 -2.21 16 22 C -0.08 -0.76 9.30 -39.59 -0.37 -1.13 16 23 C -0.13 -1.01 10.04 -39.57 -0.40 -1.41 16 24 C -0.09 -0.72 10.04 -39.59 -0.40 -1.12 16 25 C -0.15 -1.44 10.03 -39.51 -0.40 -1.84 16 26 C 0.11 1.30 7.24 -39.42 -0.29 1.01 16 27 F -0.13 -1.78 16.57 2.25 0.04 -1.74 16 28 H 0.29 6.29 8.29 -40.82 -0.34 5.96 16 29 H 0.15 3.52 6.40 -52.49 -0.34 3.19 16 30 H 0.14 2.56 8.06 -52.49 -0.42 2.13 16 31 H 0.40 7.43 7.43 -40.82 -0.30 7.13 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.38 3.55 7.33 45.56 0.33 3.88 16 35 H 0.13 0.97 6.41 -52.48 -0.34 0.63 16 36 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 345.45 15.07 5.21 5.21 Total: -1.00 -31.14 345.45 -9.19 -40.33 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -3.03 Total: 14.94 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -3.87 Total: -12.53 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.26 Total: -33.52 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.37 Total: -22.91 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.66 kcal Atomic # 16 Polarization: -1.04 SS G_CDS: -2.39 Total: -3.43 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.14 -9.19 -40.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362220363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.476 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds