Wall clock time and date at job start Tue Mar 31 2020 19:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86809 * 119.99570 * 2 1 4 4 H 1.48496 * 109.47148 * 240.00304 * 3 2 1 5 5 H 1.48501 * 109.46907 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47001 * 120.00250 * 3 2 1 7 7 C 1.40300 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00032 * 189.81992 * 7 2 1 9 9 C 1.40532 * 120.00416 * 9.82145 * 7 2 1 10 10 C 1.44190 * 123.71386 * 23.53471 * 9 7 2 11 11 C 1.32766 * 114.43526 * 179.97438 * 10 9 7 12 12 S 1.75476 * 111.35955 * 0.02562 * 11 10 9 13 13 C 1.39549 * 123.71863 * 203.50148 * 9 7 2 14 14 C 1.46236 * 125.22788 * 0.07021 * 13 9 7 15 15 O 1.21762 * 119.99631 * 359.97438 * 14 13 9 16 16 N 1.34775 * 120.00276 * 179.97438 * 14 13 9 17 17 C 1.46497 * 120.00212 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47049 * 179.97438 * 17 16 14 19 19 H 1.09004 * 109.46947 * 60.00056 * 18 17 16 20 20 O 1.42898 * 109.46958 * 299.99750 * 18 17 16 21 21 C 1.50704 * 109.46973 * 179.97438 * 18 17 16 22 22 C 1.38216 * 120.00809 * 94.72579 * 21 18 17 23 23 C 1.38227 * 120.02311 * 179.72053 * 22 21 18 24 24 C 1.38267 * 120.04895 * 0.55409 * 23 22 21 25 25 C 1.38178 * 120.02610 * 359.72494 * 24 23 22 26 26 C 1.38436 * 120.01268 * 274.99781 * 21 18 17 27 27 F 1.35099 * 120.02771 * 0.03074 * 26 21 18 28 28 H 0.96993 * 120.00481 * 359.97438 * 1 2 3 29 29 H 1.08001 * 122.78192 * 359.97438 * 10 9 7 30 30 H 1.07995 * 124.31782 * 180.26902 * 11 10 9 31 31 H 0.97000 * 119.99714 * 359.97438 * 16 14 13 32 32 H 1.09000 * 109.46912 * 299.99700 * 17 16 14 33 33 H 1.08995 * 109.47341 * 59.99661 * 17 16 14 34 34 H 0.96700 * 114.00325 * 299.99558 * 20 18 17 35 35 H 1.08003 * 119.99026 * 0.02562 * 22 21 18 36 36 H 1.07991 * 119.97441 * 180.28069 * 23 22 21 37 37 H 1.08001 * 119.98882 * 179.74957 * 24 23 22 38 38 H 1.08003 * 120.01264 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6179 0.0000 4 1 3.0940 1.6966 -1.2125 5 1 1.2752 2.7465 0.0006 6 1 3.0941 1.6966 1.2124 7 6 2.0080 -1.2150 -0.0005 8 1 3.0761 -1.2219 0.1590 9 6 1.3209 -2.4231 -0.2087 10 6 0.0550 -2.5163 -0.8926 11 6 -0.4292 -3.7490 -0.9863 12 16 0.6424 -4.9156 -0.2316 13 6 1.7890 -3.6648 0.2232 14 6 3.0407 -3.8899 0.9450 15 8 3.7664 -2.9497 1.2130 16 7 3.3911 -5.1381 1.3135 17 6 4.6448 -5.3635 2.0371 18 6 4.8011 -6.8563 2.3336 19 1 4.8172 -7.4131 1.3966 20 8 3.7033 -7.3007 3.1330 21 6 6.0912 -7.0883 3.0773 22 6 6.0922 -7.1453 4.4583 23 6 7.2743 -7.3639 5.1406 24 6 8.4587 -7.5142 4.4431 25 6 8.4609 -7.4518 3.0628 26 6 7.2763 -7.2387 2.3779 27 9 7.2774 -7.1771 1.0283 28 1 -0.4850 0.8399 0.0004 29 1 -0.4569 -1.6548 -1.2954 30 1 -1.3616 -4.0018 -1.4690 31 1 2.8127 -5.8870 1.1003 32 1 5.4822 -5.0241 1.4274 33 1 4.6286 -4.8071 2.9741 34 1 3.6273 -6.8473 3.9838 35 1 5.1683 -7.0240 5.0044 36 1 7.2735 -7.4128 6.2194 37 1 9.3824 -7.6808 4.9774 38 1 9.3861 -7.5697 2.5181 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362220363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:14 Heat of formation + Delta-G solvation = -109.624746 kcal Electronic energy + Delta-G solvation = -25295.713963 eV Core-core repulsion = 21335.673264 eV Total energy + Delta-G solvation = -3960.040699 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.99973 -40.78806 -39.95828 -38.28621 -37.70426 -35.08636 -34.92317 -32.78485 -31.56172 -30.95847 -29.56289 -27.69612 -25.06567 -23.79526 -23.61224 -22.42435 -21.78556 -20.64367 -19.48092 -19.07687 -17.93662 -17.76770 -17.63812 -17.19127 -16.73678 -16.43272 -16.37094 -16.20971 -15.70443 -15.30633 -15.20940 -15.17610 -14.74192 -14.22007 -14.20442 -13.96740 -13.76924 -13.48640 -13.43837 -13.13165 -12.99032 -12.93063 -12.74309 -12.35542 -12.17945 -12.07750 -12.05035 -11.45706 -11.37653 -11.06616 -10.44186 -10.02814 -9.99078 -9.69011 -9.36711 -8.95458 -8.87025 -6.47352 0.08546 0.20377 0.29600 1.32782 1.35555 1.36640 1.45119 1.77603 1.96685 2.16280 2.37582 2.51318 2.62466 3.17098 3.28721 3.31279 3.49284 3.69423 3.75480 3.93528 4.12946 4.32960 4.35345 4.36053 4.49744 4.69722 4.84811 4.89424 4.99478 5.03261 5.16074 5.26569 5.32061 5.37947 5.41821 5.55362 5.64011 5.82134 5.88960 6.37778 6.53950 6.56673 6.69717 6.92924 7.68605 8.06368 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015035 B = 0.002984 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.889148 B = 9381.390749 C =10485.269587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.257 1.257 5 H -0.249 1.249 6 H -0.270 1.270 7 C -0.418 4.418 8 H 0.083 0.917 9 C 0.113 3.887 10 C -0.129 4.129 11 C -0.191 4.191 12 S 0.007 5.993 13 C -0.468 4.468 14 C 0.590 3.410 15 O -0.604 6.604 16 N -0.730 5.730 17 C 0.108 3.892 18 C 0.157 3.843 19 H 0.107 0.893 20 O -0.551 6.551 21 C -0.164 4.164 22 C -0.088 4.088 23 C -0.123 4.123 24 C -0.086 4.086 25 C -0.159 4.159 26 C 0.079 3.921 27 F -0.152 7.152 28 H 0.302 0.698 29 H 0.143 0.857 30 H 0.178 0.822 31 H 0.402 0.598 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.390 0.610 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.858 -12.036 8.576 17.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.181 1.181 5 H -0.172 1.172 6 H -0.194 1.194 7 C -0.448 4.448 8 H 0.101 0.899 9 C 0.102 3.898 10 C -0.162 4.162 11 C -0.325 4.325 12 S 0.262 5.738 13 C -0.587 4.587 14 C 0.387 3.613 15 O -0.491 6.491 16 N -0.383 5.383 17 C -0.017 4.017 18 C 0.097 3.903 19 H 0.125 0.875 20 O -0.359 6.359 21 C -0.166 4.166 22 C -0.105 4.105 23 C -0.141 4.141 24 C -0.103 4.103 25 C -0.177 4.177 26 C 0.060 3.940 27 F -0.131 7.131 28 H 0.113 0.887 29 H 0.160 0.840 30 H 0.195 0.805 31 H 0.237 0.763 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.240 0.760 35 H 0.170 0.830 36 H 0.180 0.820 37 H 0.184 0.816 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.989 -13.200 8.409 18.567 hybrid contribution 0.093 2.294 -0.401 2.330 sum 10.081 -10.907 8.008 16.874 Atomic orbital electron populations 1.69639 1.08773 1.32063 1.31137 1.27055 0.95820 1.04831 0.90718 0.85132 0.78943 0.74921 0.80063 1.18135 1.17204 1.19440 1.20005 0.96901 0.90792 1.37137 0.89852 1.18378 0.90905 0.92329 0.88204 1.21625 0.96387 0.97217 1.00943 1.25463 1.04195 0.96135 1.06672 1.82408 1.16117 1.11687 1.63575 1.23023 1.06559 0.97236 1.31874 1.17055 0.84456 0.82037 0.77749 1.90614 1.55131 1.43182 1.60133 1.45512 1.23702 1.08250 1.60853 1.21802 0.86741 0.96414 0.96717 1.20606 0.83567 0.91989 0.94143 0.87512 1.86615 1.48897 1.65667 1.34686 1.20449 0.93976 1.05954 0.96202 1.21145 1.00688 0.97256 0.91449 1.21619 0.91552 0.98823 1.02085 1.21500 1.00113 0.96297 0.92421 1.21463 0.96798 1.03127 0.96333 1.17906 0.95441 1.04089 0.76614 1.91476 1.97373 1.94016 1.30194 0.88680 0.84000 0.80507 0.76310 0.93021 0.91928 0.75955 0.83017 0.81972 0.81631 0.83099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.74 10.81 21.89 0.24 -38.50 16 2 C 0.04 1.80 5.39 85.37 0.46 2.26 16 3 Si 0.99 38.76 29.57 68.60 2.03 40.79 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.25 -8.56 7.11 99.48 0.71 -7.86 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 7 C -0.42 -23.87 8.51 23.33 0.20 -23.67 16 8 H 0.08 5.10 6.04 -2.91 -0.02 5.08 16 9 C 0.11 6.32 5.68 -20.89 -0.12 6.21 16 10 C -0.13 -6.41 9.04 22.61 0.20 -6.21 16 11 C -0.19 -8.12 11.07 66.64 0.74 -7.38 16 12 S 0.01 0.28 22.25 -56.49 -1.26 -0.98 16 13 C -0.47 -24.77 6.51 24.67 0.16 -24.61 16 14 C 0.59 30.72 7.76 86.32 0.67 31.39 16 15 O -0.60 -35.43 14.45 -4.55 -0.07 -35.50 16 16 N -0.73 -29.91 5.44 -467.49 -2.54 -32.45 16 17 C 0.11 3.69 5.32 86.38 0.46 4.15 16 18 C 0.16 4.16 3.07 29.85 0.09 4.25 16 19 H 0.11 3.00 7.79 -2.39 -0.02 2.98 16 20 O -0.55 -13.37 12.74 -148.98 -1.90 -15.27 16 21 C -0.16 -3.75 5.07 -19.82 -0.10 -3.85 16 22 C -0.09 -1.47 9.30 22.26 0.21 -1.27 16 23 C -0.12 -1.55 10.04 22.27 0.22 -1.33 16 24 C -0.09 -1.08 10.04 22.26 0.22 -0.85 16 25 C -0.16 -2.78 10.03 22.31 0.22 -2.56 16 26 C 0.08 1.87 7.24 22.37 0.16 2.04 16 27 F -0.15 -4.26 16.57 44.97 0.75 -3.52 16 28 H 0.30 12.96 8.29 -92.71 -0.77 12.19 16 29 H 0.14 6.99 6.40 -2.91 -0.02 6.97 16 30 H 0.18 6.00 8.06 -2.91 -0.02 5.98 16 31 H 0.40 15.23 7.43 -92.71 -0.69 14.54 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.39 6.85 7.33 -74.06 -0.54 6.31 16 35 H 0.15 1.85 6.41 -2.91 -0.02 1.84 16 36 H 0.16 1.03 8.06 -2.92 -0.02 1.00 16 37 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 38 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -71.17 345.45 0.96 -70.20 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: -0.09 Total: 36.66 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 3.80 Total: -21.43 kcal Atomic # 7 Polarization: -68.65 SS G_CDS: -2.31 Total: -70.96 kcal Atomic # 8 Polarization: -48.81 SS G_CDS: -1.96 Total: -50.77 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.75 Total: -3.52 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -1.26 Total: -0.98 kcal Total: -71.17 0.96 -70.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362220363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.422 kcal (2) G-P(sol) polarization free energy of solvation -71.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds