Wall clock time and date at job start Tue Mar 31 2020 18:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.47108 * 2 1 4 4 C 1.34814 * 117.00472 * 179.97438 * 3 2 1 5 5 O 1.21551 * 119.99620 * 0.02562 * 4 3 2 6 6 C 1.47022 * 120.00459 * 179.97438 * 4 3 2 7 7 C 1.38015 * 126.42307 * 180.02562 * 6 4 3 8 8 C 1.39826 * 107.62398 * 179.97438 * 7 6 4 9 9 N 1.40038 * 125.68659 * 180.02562 * 8 7 6 10 10 C 1.34781 * 120.00159 * 359.97438 * 9 8 7 11 11 O 1.21781 * 119.99418 * 0.02562 * 10 9 8 12 12 C 1.46178 * 120.00022 * 180.02562 * 10 9 8 13 13 S 1.75660 * 125.23261 * 0.02562 * 12 10 9 14 14 C 1.75476 * 92.09788 * 179.97438 * 13 12 10 15 15 C 1.32750 * 111.36518 * 0.02562 * 14 13 12 16 16 C 1.39586 * 125.22977 * 179.72455 * 12 10 9 17 17 C 1.40507 * 123.71628 * 0.02847 * 16 12 10 18 18 H 1.07996 * 120.00366 * 334.97724 * 17 16 12 19 19 C 1.40305 * 119.99784 * 154.98124 * 17 16 12 20 20 N 1.30642 * 120.00289 * 162.40244 * 19 17 16 21 21 Si 1.86807 * 120.00227 * 342.39868 * 19 17 16 22 22 H 1.48498 * 109.46946 * 94.00814 * 21 19 17 23 23 H 1.48496 * 109.47168 * 214.01082 * 21 19 17 24 24 H 1.48497 * 109.46852 * 334.01198 * 21 19 17 25 25 N 1.31376 * 108.62788 * 359.97438 * 8 7 6 26 26 N 1.36741 * 126.42440 * 359.69057 * 6 4 3 27 27 H 0.96997 * 126.08428 * 359.97438 * 26 6 4 28 28 H 1.09002 * 109.47119 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47337 * 300.00508 * 1 2 3 30 30 H 1.09002 * 109.46914 * 60.00076 * 1 2 3 31 31 H 1.09008 * 109.46759 * 119.99513 * 2 1 3 32 32 H 1.08989 * 109.47415 * 239.99910 * 2 1 3 33 33 H 1.07996 * 126.18783 * 359.97438 * 7 6 4 34 34 H 0.97005 * 120.00045 * 179.97438 * 9 8 7 35 35 H 1.07996 * 124.31856 * 179.97438 * 14 13 12 36 36 H 1.08003 * 122.78218 * 180.02562 * 15 14 13 37 37 H 0.97001 * 120.00675 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3505 1.5457 0.0005 5 8 4.0909 0.5818 0.0005 6 6 3.9124 2.9043 0.0000 7 6 5.2518 3.2371 0.0000 8 6 5.3414 4.6324 -0.0012 9 7 6.5288 5.3748 -0.0022 10 6 7.7190 4.7424 -0.0014 11 8 7.7617 3.5254 -0.0004 12 6 8.9584 5.5174 -0.0019 13 16 9.0570 7.2712 -0.0026 14 6 10.8114 7.2370 -0.0019 15 6 11.2708 5.9915 -0.0017 16 6 10.2457 4.9775 0.0043 17 6 10.5128 3.5981 0.0112 18 1 9.7824 2.9085 0.4077 19 6 11.7287 3.1165 -0.4970 20 7 12.1332 1.9124 -0.1918 21 14 12.7693 4.1971 -1.6103 22 1 13.7792 4.9194 -0.7957 23 1 13.4586 3.3513 -2.6175 24 1 11.8970 5.1796 -2.3024 25 7 4.1259 5.1310 -0.0024 26 7 3.2060 4.0751 -0.0070 27 1 2.2397 4.1593 -0.0128 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 6.0808 2.5449 0.0007 34 1 6.4947 6.3443 -0.0033 35 1 11.4376 8.1169 -0.0025 36 1 12.3251 5.7571 -0.0009 37 1 12.9736 1.5793 -0.5434 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362273768.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:03 Heat of formation + Delta-G solvation = -15.266544 kcal Electronic energy + Delta-G solvation = -25153.578427 eV Core-core repulsion = 21217.549367 eV Total energy + Delta-G solvation = -3936.029059 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.28994 -40.10868 -38.47141 -36.75103 -36.38018 -34.04371 -33.49088 -32.11424 -30.51595 -30.11578 -29.21510 -26.73243 -24.96704 -22.88354 -22.71722 -21.53125 -20.72472 -19.74417 -19.09936 -18.72281 -17.90037 -17.09326 -16.81716 -16.05883 -15.91460 -15.45801 -15.04479 -14.85326 -14.57785 -14.24523 -13.79070 -13.60886 -13.50803 -13.32236 -13.18846 -12.96336 -12.50310 -12.25821 -12.17480 -11.94451 -11.69652 -11.49948 -11.09819 -11.04879 -10.80591 -10.62826 -10.54366 -10.48663 -10.10196 -9.72189 -9.53426 -8.82404 -8.67481 -8.09099 -7.75796 -7.47130 -7.31588 -4.70550 0.95213 1.73409 2.25499 2.54774 2.58996 2.75088 2.79953 2.99151 3.02151 3.08785 3.35694 3.42724 3.67691 3.74378 4.26942 4.54265 4.63028 4.68980 4.97127 4.99285 5.09753 5.29155 5.44772 5.55739 5.61530 5.67796 5.74743 6.03503 6.12920 6.39232 6.60130 6.62797 6.78923 6.95109 7.10822 7.23563 7.42502 7.53965 7.63407 8.08813 8.22518 8.29956 8.60309 9.24754 9.64658 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.016397 B = 0.002962 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.194060 B = 9451.554493 C =10985.016088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.362 6.362 4 C 0.538 3.462 5 O -0.478 6.478 6 C 0.038 3.962 7 C -0.161 4.161 8 C 0.317 3.683 9 N -0.648 5.648 10 C 0.599 3.401 11 O -0.531 6.531 12 C -0.429 4.429 13 S -0.019 6.019 14 C -0.170 4.170 15 C -0.165 4.165 16 C 0.109 3.891 17 C -0.347 4.347 18 H 0.126 0.874 19 C 0.075 3.925 20 N -0.757 5.757 21 Si 0.911 3.089 22 H -0.263 1.263 23 H -0.280 1.280 24 H -0.238 1.238 25 N -0.300 5.300 26 N -0.453 5.453 27 H 0.445 0.555 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.193 0.807 34 H 0.408 0.592 35 H 0.146 0.854 36 H 0.127 0.873 37 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.389 1.696 -0.768 13.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.279 6.279 4 C 0.379 3.621 5 O -0.362 6.362 6 C -0.089 4.089 7 C -0.193 4.193 8 C 0.062 3.938 9 N -0.297 5.297 10 C 0.398 3.602 11 O -0.411 6.411 12 C -0.548 4.548 13 S 0.237 5.763 14 C -0.304 4.304 15 C -0.198 4.198 16 C 0.098 3.902 17 C -0.376 4.376 18 H 0.144 0.856 19 C -0.151 4.151 20 N -0.378 5.378 21 Si 0.736 3.264 22 H -0.189 1.189 23 H -0.207 1.207 24 H -0.161 1.161 25 N -0.136 5.136 26 N -0.169 5.169 27 H 0.291 0.709 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.209 0.791 34 H 0.244 0.756 35 H 0.164 0.836 36 H 0.145 0.855 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.630 2.367 -0.757 14.839 hybrid contribution 1.562 -0.946 -0.391 1.867 sum -13.068 1.421 -1.148 13.195 Atomic orbital electron populations 1.21818 0.92432 1.03143 1.03545 1.23093 0.95322 0.79466 1.03163 1.86527 1.23523 1.33199 1.84694 1.19786 0.80655 0.87911 0.73728 1.90949 1.60246 1.40689 1.44325 1.20141 0.92417 0.84893 1.11418 1.22527 0.94698 0.95131 1.06937 1.19023 0.86765 0.90571 0.97424 1.43007 1.01782 1.09626 1.75308 1.16851 0.80496 0.86817 0.76002 1.90645 1.85409 1.13165 1.51880 1.22027 0.94125 0.91663 1.47014 1.82880 1.02749 1.07256 1.83375 1.24945 0.97770 1.00065 1.07642 1.21464 0.99636 0.92988 1.05706 1.17825 0.88594 0.93135 0.90654 1.19947 0.99899 0.91983 1.25800 0.85623 1.26625 0.97237 0.95681 0.95562 1.69586 1.19684 1.16798 1.31737 0.86404 0.79577 0.80431 0.79990 1.18939 1.20680 1.16117 1.77296 0.97223 1.09162 1.29896 1.46115 1.08471 1.01589 1.60731 0.70902 0.90022 0.91418 0.91429 0.90780 0.90787 0.79054 0.75639 0.83640 0.85545 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.29 37.16 0.38 -0.52 16 2 C 0.06 0.57 6.20 37.16 0.23 0.80 16 3 O -0.36 -4.20 10.23 -40.80 -0.42 -4.62 16 4 C 0.54 8.07 7.95 34.29 0.27 8.34 16 5 O -0.48 -8.53 16.69 -19.30 -0.32 -8.85 16 6 C 0.04 0.61 7.16 -82.20 -0.59 0.03 16 7 C -0.16 -3.13 9.41 -39.07 -0.37 -3.50 16 8 C 0.32 6.07 8.07 -154.60 -1.25 4.82 16 9 N -0.65 -12.85 5.44 -12.58 -0.07 -12.92 16 10 C 0.60 14.03 7.73 -13.07 -0.10 13.93 16 11 O -0.53 -13.80 11.56 5.12 0.06 -13.74 16 12 C -0.43 -10.03 6.50 -35.89 -0.23 -10.26 16 13 S -0.02 -0.36 22.25 -107.50 -2.39 -2.75 16 14 C -0.17 -3.19 11.07 28.86 0.32 -2.87 16 15 C -0.16 -3.51 7.55 -39.12 -0.30 -3.80 16 16 C 0.11 2.65 5.27 -106.20 -0.56 2.09 16 17 C -0.35 -9.11 8.99 -37.95 -0.34 -9.45 16 18 H 0.13 3.68 6.30 -52.49 -0.33 3.35 16 19 C 0.08 1.82 5.48 -17.28 -0.09 1.73 16 20 N -0.76 -18.61 13.92 55.57 0.77 -17.84 16 21 Si 0.91 18.44 24.53 -169.99 -4.17 14.28 16 22 H -0.26 -4.95 6.63 56.52 0.37 -4.57 16 23 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 24 H -0.24 -4.97 6.73 56.52 0.38 -4.59 16 25 N -0.30 -5.04 12.69 31.32 0.40 -4.64 16 26 N -0.45 -6.31 7.44 33.40 0.25 -6.06 16 27 H 0.45 4.47 8.96 -182.65 -1.64 2.84 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.07 0.66 8.14 -51.94 -0.42 0.24 16 33 H 0.19 4.24 5.86 -52.49 -0.31 3.93 16 34 H 0.41 7.23 7.90 -40.82 -0.32 6.91 16 35 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.13 2.54 4.55 -52.48 -0.24 2.30 16 37 H 0.30 6.39 8.29 -40.82 -0.34 6.06 16 LS Contribution 337.49 15.07 5.09 5.09 Total: -1.00 -29.52 337.49 -7.98 -37.51 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -4.55 Total: 13.23 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -2.62 Total: 1.33 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 1.35 Total: -41.46 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.68 Total: -27.21 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -4.17 Total: 14.28 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -2.39 Total: -2.75 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.52 -7.98 -37.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362273768.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.239 kcal (2) G-P(sol) polarization free energy of solvation -29.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds