Wall clock time and date at job start Tue Mar 31 2020 18:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.47108 * 2 1 4 4 C 1.34814 * 117.00472 * 179.97438 * 3 2 1 5 5 O 1.21551 * 119.99620 * 0.02562 * 4 3 2 6 6 C 1.47022 * 120.00459 * 179.97438 * 4 3 2 7 7 C 1.38015 * 126.42307 * 180.02562 * 6 4 3 8 8 C 1.39826 * 107.62398 * 179.97438 * 7 6 4 9 9 N 1.40038 * 125.68659 * 180.02562 * 8 7 6 10 10 C 1.34781 * 120.00159 * 359.97438 * 9 8 7 11 11 O 1.21781 * 119.99418 * 0.02562 * 10 9 8 12 12 C 1.46178 * 120.00022 * 180.02562 * 10 9 8 13 13 S 1.75660 * 125.23261 * 0.02562 * 12 10 9 14 14 C 1.75476 * 92.09788 * 179.97438 * 13 12 10 15 15 C 1.32750 * 111.36518 * 0.02562 * 14 13 12 16 16 C 1.39586 * 125.22977 * 179.72455 * 12 10 9 17 17 C 1.40507 * 123.71628 * 0.02847 * 16 12 10 18 18 H 1.07996 * 120.00366 * 334.97724 * 17 16 12 19 19 C 1.40305 * 119.99784 * 154.98124 * 17 16 12 20 20 N 1.30642 * 120.00289 * 162.40244 * 19 17 16 21 21 Si 1.86807 * 120.00227 * 342.39868 * 19 17 16 22 22 H 1.48498 * 109.46946 * 94.00814 * 21 19 17 23 23 H 1.48496 * 109.47168 * 214.01082 * 21 19 17 24 24 H 1.48497 * 109.46852 * 334.01198 * 21 19 17 25 25 N 1.31376 * 108.62788 * 359.97438 * 8 7 6 26 26 N 1.36741 * 126.42440 * 359.69057 * 6 4 3 27 27 H 0.96997 * 126.08428 * 359.97438 * 26 6 4 28 28 H 1.09002 * 109.47119 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47337 * 300.00508 * 1 2 3 30 30 H 1.09002 * 109.46914 * 60.00076 * 1 2 3 31 31 H 1.09008 * 109.46759 * 119.99513 * 2 1 3 32 32 H 1.08989 * 109.47415 * 239.99910 * 2 1 3 33 33 H 1.07996 * 126.18783 * 359.97438 * 7 6 4 34 34 H 0.97005 * 120.00045 * 179.97438 * 9 8 7 35 35 H 1.07996 * 124.31856 * 179.97438 * 14 13 12 36 36 H 1.08003 * 122.78218 * 180.02562 * 15 14 13 37 37 H 0.97001 * 120.00675 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3505 1.5457 0.0005 5 8 4.0909 0.5818 0.0005 6 6 3.9124 2.9043 0.0000 7 6 5.2518 3.2371 0.0000 8 6 5.3414 4.6324 -0.0012 9 7 6.5288 5.3748 -0.0022 10 6 7.7190 4.7424 -0.0014 11 8 7.7617 3.5254 -0.0004 12 6 8.9584 5.5174 -0.0019 13 16 9.0570 7.2712 -0.0026 14 6 10.8114 7.2370 -0.0019 15 6 11.2708 5.9915 -0.0017 16 6 10.2457 4.9775 0.0043 17 6 10.5128 3.5981 0.0112 18 1 9.7824 2.9085 0.4077 19 6 11.7287 3.1165 -0.4970 20 7 12.1332 1.9124 -0.1918 21 14 12.7693 4.1971 -1.6103 22 1 13.7792 4.9194 -0.7957 23 1 13.4586 3.3513 -2.6175 24 1 11.8970 5.1796 -2.3024 25 7 4.1259 5.1310 -0.0024 26 7 3.2060 4.0751 -0.0070 27 1 2.2397 4.1593 -0.0128 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 6.0808 2.5449 0.0007 34 1 6.4947 6.3443 -0.0033 35 1 11.4376 8.1169 -0.0025 36 1 12.3251 5.7571 -0.0009 37 1 12.9736 1.5793 -0.5434 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362273768.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:02 Heat of formation + Delta-G solvation = -35.566080 kcal Electronic energy + Delta-G solvation = -25154.458681 eV Core-core repulsion = 21217.549367 eV Total energy + Delta-G solvation = -3936.909313 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.69280 -41.36176 -40.21469 -38.08248 -37.90475 -35.75425 -35.25808 -32.94828 -31.93375 -31.52178 -30.88388 -28.52103 -26.13244 -24.46785 -23.69515 -23.11888 -22.05853 -21.30679 -20.86410 -20.03335 -19.57086 -18.26847 -17.87442 -17.75870 -17.50718 -17.05542 -16.46267 -16.40158 -16.04479 -15.50973 -15.38266 -15.05391 -14.90330 -14.69823 -14.63726 -14.25698 -13.88353 -13.67913 -13.37451 -13.07393 -13.06977 -12.74670 -12.63138 -12.43342 -12.26028 -12.19727 -11.90125 -11.77849 -11.64523 -11.37016 -11.18901 -10.52690 -10.26516 -9.70038 -9.42165 -9.10587 -9.08943 -6.56148 -0.41144 0.05318 1.06137 1.07989 1.17007 1.19613 1.29903 1.36993 1.46605 1.60603 1.63948 1.76441 2.06228 2.27780 2.47156 3.14845 3.44888 3.63463 3.97667 4.01253 4.04160 4.17763 4.27093 4.32883 4.47788 4.71133 4.73072 4.91162 4.93965 4.99490 5.01930 5.18400 5.28327 5.29493 5.58394 5.66697 5.82764 6.16868 6.22002 6.36450 6.44004 6.56275 6.77730 7.45571 7.95165 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.016397 B = 0.002962 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.194060 B = 9451.554493 C =10985.016088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.347 6.347 4 C 0.547 3.453 5 O -0.511 6.511 6 C 0.060 3.940 7 C -0.201 4.201 8 C 0.299 3.701 9 N -0.637 5.637 10 C 0.592 3.408 11 O -0.566 6.566 12 C -0.459 4.459 13 S 0.045 5.955 14 C -0.145 4.145 15 C -0.198 4.198 16 C 0.101 3.899 17 C -0.397 4.397 18 H 0.071 0.929 19 C 0.040 3.960 20 N -0.804 5.804 21 Si 0.971 3.029 22 H -0.231 1.231 23 H -0.271 1.271 24 H -0.246 1.246 25 N -0.286 5.286 26 N -0.416 5.416 27 H 0.467 0.533 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.156 0.844 34 H 0.419 0.581 35 H 0.197 0.803 36 H 0.141 0.859 37 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.751 4.827 -1.406 15.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 O -0.263 6.263 4 C 0.389 3.611 5 O -0.397 6.397 6 C -0.069 4.069 7 C -0.234 4.234 8 C 0.045 3.955 9 N -0.287 5.287 10 C 0.391 3.609 11 O -0.449 6.449 12 C -0.578 4.578 13 S 0.303 5.697 14 C -0.280 4.280 15 C -0.231 4.231 16 C 0.090 3.910 17 C -0.427 4.427 18 H 0.090 0.910 19 C -0.182 4.182 20 N -0.427 5.427 21 Si 0.791 3.209 22 H -0.155 1.155 23 H -0.197 1.197 24 H -0.169 1.169 25 N -0.122 5.122 26 N -0.135 5.135 27 H 0.318 0.682 28 H 0.122 0.878 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.174 0.826 34 H 0.256 0.744 35 H 0.214 0.786 36 H 0.158 0.842 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.080 5.542 -1.374 17.063 hybrid contribution 1.578 -1.879 -0.137 2.457 sum -14.502 3.663 -1.511 15.034 Atomic orbital electron populations 1.21847 0.89462 1.04756 1.04061 1.23516 0.97506 0.77863 1.03289 1.86533 1.20923 1.35171 1.83678 1.19573 0.81657 0.86828 0.72994 1.90948 1.61403 1.41510 1.45848 1.20003 0.91468 0.86016 1.09451 1.22186 0.95505 0.95200 1.10498 1.18993 0.87115 0.90356 0.99012 1.42623 1.01320 1.10012 1.74758 1.17133 0.81740 0.86540 0.75536 1.90664 1.86246 1.14942 1.53000 1.22554 0.93980 0.95375 1.45883 1.82572 1.03048 1.02232 1.81893 1.25577 0.98045 1.00837 1.03523 1.21418 0.99670 0.92925 1.09041 1.18174 0.90226 0.93239 0.89380 1.19720 1.00538 0.92585 1.29864 0.91046 1.27434 0.97660 0.96941 0.96156 1.69611 1.20974 1.18504 1.33586 0.85515 0.78329 0.78717 0.78324 1.15479 1.19738 1.16896 1.77265 0.96405 1.09462 1.29111 1.46127 1.09264 1.00316 1.57797 0.68241 0.87847 0.90885 0.90882 0.90784 0.90771 0.82609 0.74353 0.78583 0.84176 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 10.29 71.98 0.74 -0.58 16 2 C 0.05 0.85 6.20 71.98 0.45 1.29 16 3 O -0.35 -7.51 10.23 -57.26 -0.59 -8.09 16 4 C 0.55 16.40 7.95 70.12 0.56 16.95 16 5 O -0.51 -18.91 16.69 19.67 0.33 -18.58 16 6 C 0.06 1.94 7.16 40.63 0.29 2.23 16 7 C -0.20 -8.27 9.41 22.60 0.21 -8.06 16 8 C 0.30 11.64 8.07 133.18 1.07 12.71 16 9 N -0.64 -25.83 5.44 -311.90 -1.70 -27.53 16 10 C 0.59 29.17 7.73 86.30 0.67 29.84 16 11 O -0.57 -32.23 11.56 -4.61 -0.05 -32.29 16 12 C -0.46 -21.83 6.50 24.66 0.16 -21.67 16 13 S 0.05 1.61 22.25 -56.49 -1.26 0.36 16 14 C -0.15 -4.88 11.07 66.64 0.74 -4.14 16 15 C -0.20 -8.07 7.55 22.61 0.17 -7.90 16 16 C 0.10 5.07 5.27 -20.89 -0.11 4.96 16 17 C -0.40 -22.48 8.99 23.33 0.21 -22.27 16 18 H 0.07 4.70 6.30 -2.91 -0.02 4.68 16 19 C 0.04 2.02 5.48 85.37 0.47 2.49 16 20 N -0.80 -42.14 13.92 21.89 0.30 -41.84 16 21 Si 0.97 37.92 24.53 68.60 1.68 39.60 16 22 H -0.23 -7.75 6.63 99.48 0.66 -7.09 16 23 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 24 H -0.25 -9.78 6.73 99.48 0.67 -9.11 16 25 N -0.29 -9.24 12.69 -54.83 -0.70 -9.93 16 26 N -0.42 -10.84 7.44 -48.25 -0.36 -11.19 16 27 H 0.47 7.89 8.96 -213.37 -1.91 5.98 16 28 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.16 7.67 5.86 -2.91 -0.02 7.65 16 34 H 0.42 14.59 7.90 -92.70 -0.73 13.86 16 35 H 0.20 4.61 8.06 -2.91 -0.02 4.58 16 36 H 0.14 5.27 4.55 -2.91 -0.01 5.26 16 37 H 0.31 13.95 8.29 -92.71 -0.77 13.18 16 Total: -1.00 -71.52 337.49 1.75 -69.77 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: -1.55 Total: 33.87 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 5.63 Total: 5.85 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -2.45 Total: -90.49 kcal Atomic # 8 Polarization: -58.65 SS G_CDS: -0.31 Total: -58.96 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 1.68 Total: 39.60 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -1.26 Total: 0.36 kcal Total: -71.52 1.75 -69.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362273768.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.204 kcal (2) G-P(sol) polarization free energy of solvation -71.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds