Wall clock time and date at job start Tue Mar 31 2020 18:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29192 * 125.34893 * 2 1 4 4 N 1.40270 * 107.86631 * 180.16315 * 3 2 1 5 5 C 1.46505 * 126.63652 * 179.81789 * 4 3 2 6 6 C 1.50695 * 109.47211 * 269.68731 * 5 4 3 7 7 O 1.21295 * 120.00258 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00184 * 179.97438 * 6 5 4 9 9 C 1.39933 * 119.99850 * 185.73956 * 8 6 5 10 10 C 1.38676 * 120.11802 * 24.75193 * 9 8 6 11 11 C 1.38224 * 120.01891 * 180.02562 * 10 9 8 12 12 C 1.38395 * 120.25255 * 359.96098 * 11 10 9 13 13 C 1.38078 * 120.22564 * 0.02562 * 12 11 10 14 14 C 1.38996 * 119.98029 * 0.03320 * 13 12 11 15 15 S 1.76200 * 120.12498 * 179.97438 * 14 13 12 16 16 C 1.76195 * 100.00102 * 5.61095 * 15 14 13 17 17 H 1.08004 * 120.00256 * 354.97164 * 16 15 14 18 18 C 1.38692 * 120.00210 * 174.96758 * 16 15 14 19 19 N 1.31647 * 119.99714 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99935 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47053 * 60.00263 * 20 18 16 22 22 H 1.48496 * 109.46677 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47351 * 300.00010 * 20 18 16 24 24 C 1.35037 * 106.72641 * 359.55252 * 4 3 2 25 25 O 1.21706 * 126.37116 * 180.24299 * 24 4 3 26 26 O 1.34308 * 107.24967 * 0.26673 * 24 4 3 27 27 H 1.09009 * 109.46815 * 180.30849 * 1 2 3 28 28 H 1.08998 * 109.46898 * 300.30400 * 1 2 3 29 29 H 1.09001 * 109.47427 * 60.30928 * 1 2 3 30 30 H 1.09002 * 109.47213 * 149.68494 * 5 4 3 31 31 H 1.09000 * 109.46851 * 29.68300 * 5 4 3 32 32 H 0.96995 * 119.99410 * 5.73807 * 8 6 5 33 33 H 1.08001 * 119.99232 * 0.02600 * 10 9 8 34 34 H 1.08002 * 119.87197 * 179.97438 * 11 10 9 35 35 H 1.07995 * 119.88578 * 179.74664 * 12 11 10 36 36 H 1.08005 * 120.00914 * 179.97438 * 13 12 11 37 37 H 0.97002 * 119.99961 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2545 1.0537 0.0000 4 7 3.5924 0.6324 -0.0038 5 6 4.7794 1.4910 -0.0089 6 6 5.1863 1.7772 -1.4314 7 8 4.5479 1.3095 -2.3506 8 7 6.2596 2.5529 -1.6823 9 6 6.5672 2.9174 -2.9978 10 6 5.5711 2.9491 -3.9621 11 6 5.8774 3.3089 -5.2610 12 6 7.1765 3.6396 -5.6051 13 6 8.1762 3.6117 -4.6532 14 6 7.8791 3.2501 -3.3444 15 16 9.1521 3.2126 -2.1266 16 6 10.4924 3.8667 -3.0648 17 1 10.3651 4.0725 -4.1174 18 6 11.7109 4.1175 -2.4517 19 7 11.8662 3.8662 -1.1688 20 14 13.1316 4.8116 -3.4463 21 1 12.7405 6.1253 -4.0177 22 1 14.3134 4.9880 -2.5645 23 1 13.4701 3.8740 -4.5470 24 6 3.5746 -0.7179 0.0041 25 8 4.5450 -1.4524 0.0080 26 8 2.2868 -1.0992 0.0064 27 1 -0.3633 -1.0277 0.0055 28 1 -0.3633 0.5185 0.8872 29 1 -0.3634 0.5090 -0.8927 30 1 5.5955 0.9859 0.5079 31 1 4.5521 2.4281 0.4995 32 1 6.8187 2.8583 -0.9509 33 1 4.5558 2.6925 -3.6981 34 1 5.0998 3.3324 -6.0103 35 1 7.4099 3.9159 -6.6227 36 1 9.1889 3.8700 -4.9256 37 1 12.7185 4.0412 -0.7400 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363751380.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:52 Heat of formation + Delta-G solvation = -0.334976 kcal Electronic energy + Delta-G solvation = -25301.783665 eV Core-core repulsion = 21366.402087 eV Total energy + Delta-G solvation = -3935.381578 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.61465 -40.28278 -38.24813 -37.82653 -36.28346 -34.52903 -33.35642 -32.79223 -30.88044 -30.37043 -29.01051 -27.13242 -25.91939 -23.70421 -22.71334 -22.41126 -21.87755 -20.28816 -18.60964 -18.12666 -17.92156 -16.98544 -16.86169 -16.56358 -16.17628 -16.02297 -15.20389 -15.14867 -14.72924 -14.44433 -14.17944 -14.11818 -13.70805 -13.33878 -13.12341 -12.98400 -12.83935 -12.74864 -12.25025 -12.22741 -12.21915 -11.72711 -11.42211 -11.23202 -11.11962 -11.05871 -10.44142 -10.24905 -10.01709 -9.65867 -9.58386 -9.09614 -8.82781 -8.71642 -7.73892 -6.57978 -6.56015 -4.27984 1.23021 1.33429 1.75286 2.02973 2.04958 2.35445 2.68426 2.97304 3.09885 3.13725 3.18829 3.33909 3.80428 3.94593 4.39721 4.45215 4.54766 4.74689 4.84064 4.86146 4.87168 5.01657 5.04040 5.15543 5.35386 5.57252 5.62440 5.62632 5.83412 6.07467 6.16138 6.49665 6.75644 6.83054 7.04023 7.15999 7.17422 7.32583 7.41203 7.60583 7.62731 8.09386 8.16635 8.92298 10.50992 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.019351 B = 0.002789 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.627865 B =10035.853402 C =11064.775471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.240 3.760 3 N -0.259 5.259 4 N -0.442 5.442 5 C 0.140 3.860 6 C 0.494 3.506 7 O -0.515 6.515 8 N -0.649 5.649 9 C 0.123 3.877 10 C -0.110 4.110 11 C -0.147 4.147 12 C -0.115 4.115 13 C -0.128 4.128 14 C -0.104 4.104 15 S 0.033 5.967 16 C -0.546 4.546 17 H 0.095 0.905 18 C 0.078 3.922 19 N -0.865 5.865 20 Si 0.925 3.075 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.270 1.270 24 C 0.613 3.387 25 O -0.477 6.477 26 O -0.271 6.271 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.414 0.586 33 H 0.134 0.866 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.140 0.860 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.907 -2.504 3.941 20.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.014 3.986 3 N -0.088 5.088 4 N -0.272 5.272 5 C 0.016 3.984 6 C 0.279 3.721 7 O -0.390 6.390 8 N -0.294 5.294 9 C 0.021 3.979 10 C -0.131 4.131 11 C -0.170 4.170 12 C -0.136 4.136 13 C -0.154 4.154 14 C -0.221 4.221 15 S 0.288 5.712 16 C -0.693 4.693 17 H 0.112 0.888 18 C -0.132 4.132 19 N -0.499 5.499 20 Si 0.750 3.250 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.195 1.195 24 C 0.365 3.635 25 O -0.357 6.357 26 O -0.168 6.168 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.252 0.748 33 H 0.152 0.848 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.157 0.843 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.411 -2.920 4.864 20.223 hybrid contribution 1.432 0.315 -1.589 2.162 sum -17.979 -2.605 3.275 18.459 Atomic orbital electron populations 1.20516 0.79809 1.05993 1.05912 1.26533 0.96954 0.78881 0.96237 1.77116 0.88089 1.21979 1.21650 1.49194 1.03690 1.05164 1.69197 1.21347 0.84426 0.96860 0.95756 1.20802 0.81127 0.78710 0.91502 1.90692 1.53168 1.49640 1.45503 1.43261 1.28143 1.49527 1.08436 1.17144 0.92134 1.04664 0.83927 1.21043 0.98751 1.00599 0.92722 1.20753 0.96419 1.04041 0.95809 1.20980 0.93185 1.00736 0.98685 1.21294 1.00354 1.02096 0.91654 1.22453 0.96326 1.03169 1.00186 1.83045 1.00048 1.74335 1.13809 1.23217 0.97222 1.50261 0.98603 0.88751 1.25090 0.98599 0.94250 0.95295 1.69979 1.26048 1.44185 1.09651 0.86097 0.79683 0.79663 0.79545 1.19470 1.20560 1.19465 1.19204 0.82037 0.83112 0.79186 1.91244 1.31267 1.58037 1.55154 1.85174 1.18145 1.34835 1.78631 0.88227 0.87538 0.87508 0.84699 0.84683 0.74845 0.84809 0.86970 0.87009 0.84304 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.21 10.51 36.01 0.38 0.17 16 2 C 0.24 2.22 8.36 -13.39 -0.11 2.11 16 3 N -0.26 -2.96 12.55 32.46 0.41 -2.55 16 4 N -0.44 -5.87 3.13 -66.44 -0.21 -6.08 16 5 C 0.14 1.61 6.90 -5.19 -0.04 1.57 16 6 C 0.49 7.76 7.70 -10.99 -0.08 7.67 16 7 O -0.51 -9.83 13.60 5.54 0.08 -9.75 16 8 N -0.65 -10.73 5.17 -9.70 -0.05 -10.78 16 9 C 0.12 2.42 6.44 -83.45 -0.54 1.88 16 10 C -0.11 -2.06 8.71 -39.43 -0.34 -2.40 16 11 C -0.15 -2.55 10.04 -39.53 -0.40 -2.95 16 12 C -0.12 -2.06 10.03 -39.58 -0.40 -2.46 16 13 C -0.13 -2.66 9.26 -39.36 -0.36 -3.03 16 14 C -0.10 -2.25 6.12 -38.75 -0.24 -2.49 16 15 S 0.03 0.80 20.37 -107.50 -2.19 -1.39 16 16 C -0.55 -14.28 9.08 30.90 0.28 -14.00 16 17 H 0.09 2.37 4.81 -52.48 -0.25 2.12 16 18 C 0.08 2.04 5.49 -17.46 -0.10 1.94 16 19 N -0.87 -23.55 13.22 55.48 0.73 -22.82 16 20 Si 0.92 20.03 29.55 -169.99 -5.02 15.00 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 C 0.61 9.29 9.26 54.17 0.50 9.80 16 25 O -0.48 -8.72 17.93 -19.01 -0.34 -9.06 16 26 O -0.27 -3.36 10.71 -19.79 -0.21 -3.58 16 27 H 0.10 0.18 8.14 -51.92 -0.42 -0.25 16 28 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.14 1.32 8.13 -51.93 -0.42 0.90 16 31 H 0.14 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.41 6.14 7.65 -40.82 -0.31 5.83 16 33 H 0.13 2.50 5.79 -52.49 -0.30 2.19 16 34 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.14 2.97 4.93 -52.48 -0.26 2.71 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 LS Contribution 343.76 15.07 5.18 5.18 Total: -1.00 -35.16 343.76 -6.29 -41.45 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -3.22 Total: 6.55 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.44 Total: -2.18 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.88 Total: -42.23 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.48 Total: -22.39 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.19 Total: -1.39 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.16 -6.29 -41.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363751380.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.118 kcal (2) G-P(sol) polarization free energy of solvation -35.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds