Wall clock time and date at job start Tue Mar 31 2020 18:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29192 * 125.34893 * 2 1 4 4 N 1.40270 * 107.86631 * 180.16315 * 3 2 1 5 5 C 1.46505 * 126.63652 * 179.81789 * 4 3 2 6 6 C 1.50695 * 109.47211 * 269.68731 * 5 4 3 7 7 O 1.21295 * 120.00258 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00184 * 179.97438 * 6 5 4 9 9 C 1.39933 * 119.99850 * 185.73956 * 8 6 5 10 10 C 1.38676 * 120.11802 * 24.75193 * 9 8 6 11 11 C 1.38224 * 120.01891 * 180.02562 * 10 9 8 12 12 C 1.38395 * 120.25255 * 359.96098 * 11 10 9 13 13 C 1.38078 * 120.22564 * 0.02562 * 12 11 10 14 14 C 1.38996 * 119.98029 * 0.03320 * 13 12 11 15 15 S 1.76200 * 120.12498 * 179.97438 * 14 13 12 16 16 C 1.76195 * 100.00102 * 5.61095 * 15 14 13 17 17 H 1.08004 * 120.00256 * 354.97164 * 16 15 14 18 18 C 1.38692 * 120.00210 * 174.96758 * 16 15 14 19 19 N 1.31647 * 119.99714 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99935 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47053 * 60.00263 * 20 18 16 22 22 H 1.48496 * 109.46677 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47351 * 300.00010 * 20 18 16 24 24 C 1.35037 * 106.72641 * 359.55252 * 4 3 2 25 25 O 1.21706 * 126.37116 * 180.24299 * 24 4 3 26 26 O 1.34308 * 107.24967 * 0.26673 * 24 4 3 27 27 H 1.09009 * 109.46815 * 180.30849 * 1 2 3 28 28 H 1.08998 * 109.46898 * 300.30400 * 1 2 3 29 29 H 1.09001 * 109.47427 * 60.30928 * 1 2 3 30 30 H 1.09002 * 109.47213 * 149.68494 * 5 4 3 31 31 H 1.09000 * 109.46851 * 29.68300 * 5 4 3 32 32 H 0.96995 * 119.99410 * 5.73807 * 8 6 5 33 33 H 1.08001 * 119.99232 * 0.02600 * 10 9 8 34 34 H 1.08002 * 119.87197 * 179.97438 * 11 10 9 35 35 H 1.07995 * 119.88578 * 179.74664 * 12 11 10 36 36 H 1.08005 * 120.00914 * 179.97438 * 13 12 11 37 37 H 0.97002 * 119.99961 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2545 1.0537 0.0000 4 7 3.5924 0.6324 -0.0038 5 6 4.7794 1.4910 -0.0089 6 6 5.1863 1.7772 -1.4314 7 8 4.5479 1.3095 -2.3506 8 7 6.2596 2.5529 -1.6823 9 6 6.5672 2.9174 -2.9978 10 6 5.5711 2.9491 -3.9621 11 6 5.8774 3.3089 -5.2610 12 6 7.1765 3.6396 -5.6051 13 6 8.1762 3.6117 -4.6532 14 6 7.8791 3.2501 -3.3444 15 16 9.1521 3.2126 -2.1266 16 6 10.4924 3.8667 -3.0648 17 1 10.3651 4.0725 -4.1174 18 6 11.7109 4.1175 -2.4517 19 7 11.8662 3.8662 -1.1688 20 14 13.1316 4.8116 -3.4463 21 1 12.7405 6.1253 -4.0177 22 1 14.3134 4.9880 -2.5645 23 1 13.4701 3.8740 -4.5470 24 6 3.5746 -0.7179 0.0041 25 8 4.5450 -1.4524 0.0080 26 8 2.2868 -1.0992 0.0064 27 1 -0.3633 -1.0277 0.0055 28 1 -0.3633 0.5185 0.8872 29 1 -0.3634 0.5090 -0.8927 30 1 5.5955 0.9859 0.5079 31 1 4.5521 2.4281 0.4995 32 1 6.8187 2.8583 -0.9509 33 1 4.5558 2.6925 -3.6981 34 1 5.0998 3.3324 -6.0103 35 1 7.4099 3.9159 -6.6227 36 1 9.1889 3.8700 -4.9256 37 1 12.7185 4.0412 -0.7400 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363751380.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:51 Heat of formation + Delta-G solvation = -26.077669 kcal Electronic energy + Delta-G solvation = -25302.899952 eV Core-core repulsion = 21366.402087 eV Total energy + Delta-G solvation = -3936.497865 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.57401 -41.63450 -39.51283 -39.17948 -37.29740 -35.93117 -34.73791 -34.16695 -31.96485 -31.75377 -30.17644 -28.09320 -27.85075 -24.81984 -23.99149 -23.63584 -23.08842 -21.61803 -20.23727 -19.22449 -19.07549 -18.32601 -18.14313 -17.78619 -17.48608 -17.23259 -16.94144 -16.47452 -15.82150 -15.68110 -15.39139 -15.13157 -14.95591 -14.70727 -14.64245 -14.16232 -13.65635 -13.60999 -13.42591 -13.38854 -13.13056 -13.03772 -12.97273 -12.90390 -12.82234 -12.17864 -12.13633 -11.74726 -11.52404 -11.40307 -11.02908 -10.66988 -10.41312 -10.13948 -9.24135 -8.50116 -8.37820 -6.24887 0.25665 0.31724 0.48390 0.53130 0.91624 1.25261 1.38380 1.40133 1.44381 1.54874 1.60219 2.00967 2.17102 2.83775 2.95558 2.99711 3.09901 3.39604 3.71488 4.00394 4.03907 4.11674 4.22807 4.25253 4.44590 4.56594 4.62444 4.64520 4.69114 4.75112 4.97796 5.16873 5.25888 5.35881 5.47036 5.57443 5.68349 6.09117 6.12186 6.17055 6.26918 6.35515 6.86521 6.95310 8.58408 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.019351 B = 0.002789 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.627865 B =10035.853402 C =11064.775471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.254 3.746 3 N -0.281 5.281 4 N -0.443 5.443 5 C 0.141 3.859 6 C 0.495 3.505 7 O -0.549 6.549 8 N -0.648 5.648 9 C 0.123 3.877 10 C -0.121 4.121 11 C -0.130 4.130 12 C -0.114 4.114 13 C -0.143 4.143 14 C -0.126 4.126 15 S -0.009 6.009 16 C -0.565 4.565 17 H 0.097 0.903 18 C 0.027 3.973 19 N -0.901 5.901 20 Si 0.991 3.009 21 H -0.262 1.262 22 H -0.275 1.275 23 H -0.265 1.265 24 C 0.603 3.397 25 O -0.522 6.522 26 O -0.275 6.275 27 H 0.119 0.881 28 H 0.133 0.867 29 H 0.123 0.877 30 H 0.151 0.849 31 H 0.177 0.823 32 H 0.421 0.579 33 H 0.138 0.862 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.127 0.873 37 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.168 -1.810 3.022 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.029 3.971 3 N -0.110 5.110 4 N -0.273 5.273 5 C 0.018 3.982 6 C 0.282 3.718 7 O -0.427 6.427 8 N -0.293 5.293 9 C 0.021 3.979 10 C -0.143 4.143 11 C -0.153 4.153 12 C -0.134 4.134 13 C -0.168 4.168 14 C -0.242 4.242 15 S 0.242 5.758 16 C -0.712 4.712 17 H 0.115 0.885 18 C -0.179 4.179 19 N -0.536 5.536 20 Si 0.813 3.187 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.190 1.190 24 C 0.355 3.645 25 O -0.406 6.406 26 O -0.171 6.171 27 H 0.137 0.863 28 H 0.151 0.849 29 H 0.141 0.859 30 H 0.169 0.831 31 H 0.194 0.806 32 H 0.259 0.741 33 H 0.155 0.845 34 H 0.167 0.833 35 H 0.164 0.836 36 H 0.145 0.855 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.751 -2.200 3.937 22.213 hybrid contribution 1.821 0.062 -1.384 2.288 sum -19.930 -2.137 2.553 20.206 Atomic orbital electron populations 1.20974 0.75419 1.07930 1.07805 1.27920 0.98637 0.77365 0.93224 1.77170 0.87102 1.22620 1.24136 1.49322 1.04904 1.04585 1.68461 1.21592 0.84788 0.98743 0.93031 1.21524 0.79976 0.77336 0.92963 1.90661 1.54138 1.50828 1.47069 1.43323 1.28613 1.49682 1.07689 1.17361 0.91575 1.03480 0.85473 1.21258 0.98670 1.00998 0.93351 1.21226 0.97090 1.01072 0.95913 1.21299 0.92604 0.99861 0.99636 1.21395 1.00725 1.02574 0.92121 1.22410 0.96255 1.05530 1.00035 1.82899 1.01158 1.76167 1.15538 1.23578 0.98177 1.50339 0.99104 0.88508 1.26008 1.01078 0.94510 0.96297 1.70085 1.26752 1.45565 1.11160 0.85093 0.76452 0.79102 0.78076 1.18650 1.19941 1.19006 1.19385 0.82413 0.83579 0.79101 1.91194 1.32963 1.59162 1.57241 1.85171 1.17459 1.36172 1.78329 0.86281 0.84850 0.85908 0.83127 0.80623 0.74058 0.84483 0.83261 0.83594 0.85529 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 71.24 0.75 0.55 16 2 C 0.25 4.18 8.36 88.50 0.74 4.92 16 3 N -0.28 -5.97 12.55 -166.08 -2.08 -8.06 16 4 N -0.44 -11.43 3.13 -594.33 -1.86 -13.29 16 5 C 0.14 3.13 6.90 85.63 0.59 3.72 16 6 C 0.49 15.39 7.70 87.65 0.68 16.07 16 7 O -0.55 -20.84 13.60 -3.08 -0.04 -20.89 16 8 N -0.65 -21.52 5.17 -303.00 -1.57 -23.09 16 9 C 0.12 4.83 6.44 38.31 0.25 5.08 16 10 C -0.12 -4.39 8.71 22.37 0.19 -4.19 16 11 C -0.13 -4.18 10.04 22.30 0.22 -3.95 16 12 C -0.11 -3.82 10.03 22.27 0.22 -3.60 16 13 C -0.14 -5.92 9.26 22.41 0.21 -5.71 16 14 C -0.13 -5.53 6.12 22.81 0.14 -5.39 16 15 S -0.01 -0.45 20.37 -56.49 -1.15 -1.60 16 16 C -0.57 -30.33 9.08 67.93 0.62 -29.71 16 17 H 0.10 4.98 4.81 -2.91 -0.01 4.97 16 18 C 0.03 1.45 5.49 84.83 0.47 1.92 16 19 N -0.90 -50.27 13.22 21.63 0.29 -49.98 16 20 Si 0.99 41.37 29.55 68.60 2.03 43.40 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 24 C 0.60 18.36 9.26 129.75 1.20 19.56 16 25 O -0.52 -19.68 17.93 18.76 0.34 -19.35 16 26 O -0.27 -6.60 10.71 15.96 0.17 -6.43 16 27 H 0.12 -0.02 8.14 -2.38 -0.02 -0.04 16 28 H 0.13 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.15 2.88 8.13 -2.39 -0.02 2.86 16 31 H 0.18 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.42 12.73 7.65 -92.71 -0.71 12.02 16 33 H 0.14 4.93 5.79 -2.91 -0.02 4.92 16 34 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 35 H 0.15 3.88 8.06 -2.91 -0.02 3.85 16 36 H 0.13 5.50 4.93 -2.91 -0.01 5.49 16 37 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -79.47 343.76 2.84 -76.63 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.45 Total: 23.39 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 6.27 Total: -0.73 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -5.22 Total: -94.42 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: 0.47 Total: -46.66 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -1.15 Total: -1.60 kcal Total: -79.47 2.84 -76.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363751380.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.547 kcal (2) G-P(sol) polarization free energy of solvation -79.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds