Wall clock time and date at job start Tue Mar 31 2020 18:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46866 * 169.04266 * 3 2 1 5 5 N 1.46503 * 109.46928 * 179.97438 * 4 3 2 6 6 C 1.46495 * 120.00330 * 275.00299 * 5 4 3 7 7 C 1.50707 * 109.46976 * 274.99877 * 6 5 4 8 8 H 1.07998 * 119.99720 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00158 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99996 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00083 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47400 * 60.00286 * 11 9 7 13 13 H 1.48509 * 109.46880 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47432 * 299.99976 * 11 9 7 15 15 S 1.65602 * 119.99660 * 95.00131 * 5 4 3 16 16 O 1.42093 * 106.40243 * 156.45953 * 15 5 4 17 17 O 1.42101 * 106.40213 * 23.54083 * 15 5 4 18 18 C 1.76203 * 107.21690 * 270.00065 * 15 5 4 19 19 C 1.35872 * 126.75297 * 114.98035 * 18 15 5 20 20 N 1.33492 * 110.87159 * 180.02562 * 19 18 15 21 21 C 1.31618 * 110.87794 * 359.97438 * 20 19 18 22 22 N 1.37389 * 135.89198 * 180.02562 * 21 20 19 23 23 H 0.96994 * 120.32266 * 359.97438 * 22 21 20 24 24 C 1.34072 * 119.35689 * 179.97438 * 22 21 20 25 25 N 1.30947 * 123.16556 * 359.97438 * 24 22 21 26 26 C 1.32824 * 122.75537 * 0.02562 * 25 24 22 27 27 C 1.38875 * 119.03354 * 359.97438 * 26 25 24 28 28 H 1.08989 * 109.47295 * 49.04273 * 3 2 1 29 29 H 1.09008 * 109.47030 * 289.03817 * 3 2 1 30 30 H 1.09002 * 109.46881 * 60.00114 * 4 3 2 31 31 H 1.08998 * 109.47065 * 300.00178 * 4 3 2 32 32 H 1.08998 * 109.47325 * 34.99516 * 6 5 4 33 33 H 1.09002 * 109.47226 * 155.00266 * 6 5 4 34 34 H 0.97001 * 119.99931 * 179.97438 * 10 9 7 35 35 H 1.08006 * 124.56747 * 0.04630 * 19 18 15 36 36 H 1.08002 * 118.41835 * 179.97438 * 24 22 21 37 37 H 1.07999 * 120.47925 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4172 -0.2742 5 7 4.5824 1.4180 -0.2736 6 6 5.3143 1.5501 0.9885 7 6 5.4574 3.0097 1.3357 8 1 5.0440 3.7633 0.6819 9 6 6.1150 3.3828 2.4886 10 7 6.6180 2.4650 3.2851 11 14 6.2917 5.1918 2.9193 12 1 4.9447 5.8006 3.0618 13 1 7.0338 5.3258 4.1987 14 1 7.0376 5.8872 1.8399 15 16 5.4110 1.2694 -1.6997 16 8 6.6934 1.8403 -1.4800 17 8 4.5294 1.7094 -2.7237 18 6 5.6727 -0.4514 -1.9739 19 6 5.1588 -1.2011 -2.9838 20 7 5.5621 -2.4700 -2.8869 21 6 6.3437 -2.6352 -1.8410 22 7 7.0225 -3.6859 -1.2728 23 1 6.9765 -4.5701 -1.6689 24 6 7.7491 -3.4772 -0.1656 25 7 7.8506 -2.3078 0.4149 26 6 7.2392 -1.2219 -0.0447 27 6 6.4579 -1.3215 -1.1886 28 1 2.9716 -0.6727 -0.7760 29 1 2.9715 -0.3344 0.9715 30 1 2.7537 2.0906 0.5019 31 1 2.7538 1.7523 -1.2456 32 1 4.7669 1.0401 1.7811 33 1 6.3029 1.1031 0.8837 34 1 7.0810 2.7275 4.0960 35 1 4.5114 -0.8216 -3.7606 36 1 8.2762 -4.3140 0.2686 37 1 7.3487 -0.2752 0.4633 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363968611.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:19 Heat of formation + Delta-G solvation = 57.110536 kcal Electronic energy + Delta-G solvation = -26873.959156 eV Core-core repulsion = 22973.361354 eV Total energy + Delta-G solvation = -3900.597802 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.00810 -38.87216 -37.14469 -36.52932 -35.69709 -35.28695 -35.10730 -32.76837 -30.75803 -30.58149 -29.42612 -26.95020 -25.07338 -23.80787 -23.66120 -22.15136 -21.51879 -19.12212 -18.45778 -17.93797 -17.37291 -17.14822 -16.86679 -16.37750 -15.88722 -15.73849 -15.34730 -14.91532 -14.65670 -14.42480 -13.82948 -13.54856 -13.35198 -13.19320 -13.18124 -12.63603 -12.41865 -12.29816 -11.95919 -11.90558 -11.63211 -11.41171 -11.32019 -11.09073 -10.93902 -10.80317 -10.59523 -10.51426 -10.50312 -10.04660 -9.84751 -9.74675 -8.86538 -8.49655 -8.41938 -8.19080 -6.10862 -4.14278 -0.21665 1.00289 1.19089 1.87850 2.82199 2.89432 2.94229 3.29568 3.34136 3.37681 3.42687 3.62800 3.66649 3.98044 4.25969 4.32120 4.41525 4.44689 4.64964 4.77561 4.98707 5.18483 5.24558 5.29659 5.37203 5.56000 5.62493 5.76514 5.86408 6.14177 6.25841 6.39331 6.43928 6.69762 7.08548 7.26896 7.37792 7.46360 7.62674 7.70792 7.87226 8.13385 8.87903 9.51651 10.97512 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.009646 B = 0.005405 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.098038 B = 5179.514064 C = 6394.881245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.221 3.779 3 C -0.054 4.054 4 C 0.129 3.871 5 N -0.983 5.983 6 C 0.255 3.745 7 C -0.530 4.530 8 H 0.063 0.937 9 C 0.065 3.935 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.274 1.274 15 S 2.707 3.293 16 O -0.944 6.944 17 O -0.978 6.978 18 C -0.761 4.761 19 C 0.182 3.818 20 N -0.530 5.530 21 C 0.279 3.721 22 N -0.527 5.527 23 H 0.427 0.573 24 C 0.349 3.651 25 N -0.513 5.513 26 C 0.222 3.778 27 C -0.137 4.137 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.180 0.820 36 H 0.220 0.780 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.410 -15.325 -5.967 16.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.097 4.097 3 C -0.096 4.096 4 C 0.001 3.999 5 N -0.821 5.821 6 C 0.134 3.866 7 C -0.569 4.569 8 H 0.081 0.919 9 C -0.137 4.137 10 N -0.533 5.533 11 Si 0.722 3.278 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.199 1.199 15 S 2.796 3.204 16 O -0.934 6.934 17 O -0.968 6.968 18 C -0.853 4.853 19 C 0.032 3.968 20 N -0.251 5.251 21 C 0.029 3.971 22 N -0.130 5.130 23 H 0.266 0.734 24 C 0.067 3.933 25 N -0.230 5.230 26 C 0.071 3.929 27 C -0.148 4.148 28 H 0.121 0.879 29 H 0.134 0.866 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.197 0.803 36 H 0.236 0.764 37 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 1.284 -15.282 -6.290 16.575 hybrid contribution 0.352 0.221 0.209 0.465 sum 1.636 -15.060 -6.081 16.324 Atomic orbital electron populations 1.81180 1.13033 1.08835 1.09527 1.29071 0.95078 0.92942 0.92635 1.19933 0.81515 1.02005 1.06153 1.21064 0.80665 0.93508 1.04686 1.57499 1.12978 1.87007 1.24591 1.19174 0.90775 0.97776 0.78903 1.21427 1.36391 0.92128 1.06978 0.91893 1.24885 0.95016 0.97811 0.96020 1.69882 1.37161 1.32933 1.13365 0.86602 0.78348 0.85115 0.77686 1.20188 1.21265 1.19942 1.01442 0.73632 0.72906 0.72466 1.93598 1.40058 1.74890 1.84845 1.93490 1.66557 1.80077 1.56669 1.31886 1.17595 1.26766 1.09082 1.22386 0.92989 0.86935 0.94487 1.69577 1.16370 1.20768 1.18393 1.20835 0.95349 0.86229 0.94642 1.42149 1.36217 1.12179 1.22465 0.73441 1.25185 0.88359 0.97962 0.81835 1.68123 1.25407 0.97966 1.31493 1.23516 0.83560 0.97264 0.88600 1.20310 1.03076 0.93194 0.98204 0.87942 0.86602 0.88288 0.89089 0.94242 0.94531 0.92567 0.80278 0.76393 0.79076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.32 18.54 42.15 0.78 -6.54 16 2 C 0.22 3.09 15.43 -20.76 -0.32 2.77 16 3 C -0.05 -0.67 6.03 -29.51 -0.18 -0.84 16 4 C 0.13 1.95 5.63 -4.04 -0.02 1.93 16 5 N -0.98 -17.85 2.77 -115.66 -0.32 -18.17 16 6 C 0.26 5.51 5.10 -5.19 -0.03 5.49 16 7 C -0.53 -13.52 9.38 -34.44 -0.32 -13.84 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -23.98 13.29 55.43 0.74 -23.24 16 11 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 15 S 2.71 50.60 5.81 -107.50 -0.62 49.97 16 16 O -0.94 -21.17 16.99 -57.17 -0.97 -22.14 16 17 O -0.98 -18.87 16.33 -57.17 -0.93 -19.80 16 18 C -0.76 -12.15 6.27 -39.35 -0.25 -12.40 16 19 C 0.18 2.67 11.38 -17.68 -0.20 2.47 16 20 N -0.53 -7.52 11.16 -11.01 -0.12 -7.65 16 21 C 0.28 3.50 8.71 -153.97 -1.34 2.16 16 22 N -0.53 -3.64 5.35 -12.03 -0.06 -3.70 16 23 H 0.43 1.22 8.93 -40.82 -0.36 0.85 16 24 C 0.35 2.17 12.26 -90.88 -1.11 1.05 16 25 N -0.51 -5.75 10.30 -14.07 -0.14 -5.90 16 26 C 0.22 3.19 11.34 -16.89 -0.19 3.00 16 27 C -0.14 -2.04 6.45 -104.98 -0.68 -2.72 16 28 H 0.10 1.14 8.14 -51.94 -0.42 0.71 16 29 H 0.12 1.33 8.14 -51.92 -0.42 0.90 16 30 H 0.10 1.52 8.11 -51.93 -0.42 1.10 16 31 H 0.09 1.32 6.92 -51.93 -0.36 0.96 16 32 H 0.04 0.84 8.11 -51.93 -0.42 0.42 16 33 H 0.04 0.82 5.26 -51.93 -0.27 0.54 16 34 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.18 2.25 8.06 -52.48 -0.42 1.83 16 36 H 0.22 0.04 8.06 -52.49 -0.42 -0.38 16 37 H 0.19 3.11 5.73 -52.49 -0.30 2.81 16 LS Contribution 346.40 15.07 5.22 5.22 Total: -1.00 -36.62 346.40 -9.58 -46.20 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -3.38 Total: -0.66 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -4.74 Total: -9.32 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: 0.87 Total: -65.19 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -1.91 Total: -41.94 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 50.60 SS G_CDS: -0.62 Total: 49.97 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.62 -9.58 -46.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363968611.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.310 kcal (2) G-P(sol) polarization free energy of solvation -36.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds