Wall clock time and date at job start Tue Mar 31 2020 18:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46866 * 169.04266 * 3 2 1 5 5 N 1.46503 * 109.46928 * 179.97438 * 4 3 2 6 6 C 1.46495 * 120.00330 * 275.00299 * 5 4 3 7 7 C 1.50707 * 109.46976 * 274.99877 * 6 5 4 8 8 H 1.07998 * 119.99720 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00158 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99996 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00083 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47400 * 60.00286 * 11 9 7 13 13 H 1.48509 * 109.46880 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47432 * 299.99976 * 11 9 7 15 15 S 1.65602 * 119.99660 * 95.00131 * 5 4 3 16 16 O 1.42093 * 106.40243 * 156.45953 * 15 5 4 17 17 O 1.42101 * 106.40213 * 23.54083 * 15 5 4 18 18 C 1.76203 * 107.21690 * 270.00065 * 15 5 4 19 19 C 1.35872 * 126.75297 * 114.98035 * 18 15 5 20 20 N 1.33492 * 110.87159 * 180.02562 * 19 18 15 21 21 C 1.31618 * 110.87794 * 359.97438 * 20 19 18 22 22 N 1.37389 * 135.89198 * 180.02562 * 21 20 19 23 23 H 0.96994 * 120.32266 * 359.97438 * 22 21 20 24 24 C 1.34072 * 119.35689 * 179.97438 * 22 21 20 25 25 N 1.30947 * 123.16556 * 359.97438 * 24 22 21 26 26 C 1.32824 * 122.75537 * 0.02562 * 25 24 22 27 27 C 1.38875 * 119.03354 * 359.97438 * 26 25 24 28 28 H 1.08989 * 109.47295 * 49.04273 * 3 2 1 29 29 H 1.09008 * 109.47030 * 289.03817 * 3 2 1 30 30 H 1.09002 * 109.46881 * 60.00114 * 4 3 2 31 31 H 1.08998 * 109.47065 * 300.00178 * 4 3 2 32 32 H 1.08998 * 109.47325 * 34.99516 * 6 5 4 33 33 H 1.09002 * 109.47226 * 155.00266 * 6 5 4 34 34 H 0.97001 * 119.99931 * 179.97438 * 10 9 7 35 35 H 1.08006 * 124.56747 * 0.04630 * 19 18 15 36 36 H 1.08002 * 118.41835 * 179.97438 * 24 22 21 37 37 H 1.07999 * 120.47925 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4172 -0.2742 5 7 4.5824 1.4180 -0.2736 6 6 5.3143 1.5501 0.9885 7 6 5.4574 3.0097 1.3357 8 1 5.0440 3.7633 0.6819 9 6 6.1150 3.3828 2.4886 10 7 6.6180 2.4650 3.2851 11 14 6.2917 5.1918 2.9193 12 1 4.9447 5.8006 3.0618 13 1 7.0338 5.3258 4.1987 14 1 7.0376 5.8872 1.8399 15 16 5.4110 1.2694 -1.6997 16 8 6.6934 1.8403 -1.4800 17 8 4.5294 1.7094 -2.7237 18 6 5.6727 -0.4514 -1.9739 19 6 5.1588 -1.2011 -2.9838 20 7 5.5621 -2.4700 -2.8869 21 6 6.3437 -2.6352 -1.8410 22 7 7.0225 -3.6859 -1.2728 23 1 6.9765 -4.5701 -1.6689 24 6 7.7491 -3.4772 -0.1656 25 7 7.8506 -2.3078 0.4149 26 6 7.2392 -1.2219 -0.0447 27 6 6.4579 -1.3215 -1.1886 28 1 2.9716 -0.6727 -0.7760 29 1 2.9715 -0.3344 0.9715 30 1 2.7537 2.0906 0.5019 31 1 2.7538 1.7523 -1.2456 32 1 4.7669 1.0401 1.7811 33 1 6.3029 1.1031 0.8837 34 1 7.0810 2.7275 4.0960 35 1 4.5114 -0.8216 -3.7606 36 1 8.2762 -4.3140 0.2686 37 1 7.3487 -0.2752 0.4633 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363968611.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:18 Heat of formation + Delta-G solvation = 30.588890 kcal Electronic energy + Delta-G solvation = -26875.109221 eV Core-core repulsion = 22973.361354 eV Total energy + Delta-G solvation = -3901.747867 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.90763 -39.78201 -38.43913 -38.06682 -37.07470 -36.68271 -36.13399 -34.63158 -32.09974 -31.59721 -30.43745 -28.69353 -25.98457 -25.33709 -24.55468 -23.72151 -22.55429 -20.22034 -19.34819 -19.29275 -18.45354 -18.33367 -18.23487 -18.12972 -17.10687 -16.70322 -16.65093 -16.23912 -15.90296 -15.80985 -15.21297 -14.89170 -14.47551 -14.32907 -14.21300 -14.10541 -13.78992 -13.66260 -13.39475 -13.11669 -13.02163 -12.87919 -12.81736 -12.78727 -12.62378 -12.23539 -12.12627 -12.05056 -11.68980 -11.61827 -11.42397 -10.84544 -10.46422 -9.88948 -9.77680 -9.44129 -8.10060 -6.18075 -1.12244 -0.34126 0.22599 1.18194 1.47027 1.49496 1.55664 1.66497 1.76178 1.80482 2.30863 2.40205 2.50313 2.92146 2.97174 3.10437 3.18665 3.23463 3.43808 3.53665 3.89772 4.00230 4.08768 4.14238 4.28336 4.47664 4.56522 4.62318 4.79227 5.04135 5.11258 5.31378 5.35123 5.53296 5.58530 5.76579 5.79757 5.97726 6.23039 6.56203 6.57218 6.63217 6.88513 7.49456 8.96640 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.009646 B = 0.005405 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.098038 B = 5179.514064 C = 6394.881245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.245 3.755 3 C -0.041 4.041 4 C 0.123 3.877 5 N -0.984 5.984 6 C 0.268 3.732 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.021 3.979 10 N -0.916 5.916 11 Si 0.942 3.058 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.281 1.281 15 S 2.715 3.285 16 O -0.992 6.992 17 O -0.991 6.991 18 C -0.772 4.772 19 C 0.179 3.821 20 N -0.539 5.539 21 C 0.286 3.714 22 N -0.505 5.505 23 H 0.452 0.548 24 C 0.385 3.615 25 N -0.540 5.540 26 C 0.221 3.779 27 C -0.171 4.171 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.029 0.971 34 H 0.266 0.734 35 H 0.193 0.807 36 H 0.291 0.709 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.969 -18.351 -5.873 19.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.072 4.072 3 C -0.083 4.083 4 C -0.005 4.005 5 N -0.821 5.821 6 C 0.145 3.855 7 C -0.585 4.585 8 H 0.070 0.930 9 C -0.179 4.179 10 N -0.556 5.556 11 Si 0.768 3.232 12 H -0.194 1.194 13 H -0.205 1.205 14 H -0.206 1.206 15 S 2.808 3.192 16 O -0.983 6.983 17 O -0.982 6.982 18 C -0.869 4.869 19 C 0.028 3.972 20 N -0.260 5.260 21 C 0.036 3.964 22 N -0.110 5.110 23 H 0.296 0.704 24 C 0.104 3.896 25 N -0.257 5.257 26 C 0.066 3.934 27 C -0.181 4.181 28 H 0.140 0.860 29 H 0.148 0.852 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.210 0.790 36 H 0.306 0.694 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.825 -18.317 -6.200 19.424 hybrid contribution 0.304 0.977 0.195 1.042 sum 2.129 -17.340 -6.005 18.474 Atomic orbital electron populations 1.81206 1.14193 1.10058 1.11025 1.29166 0.95014 0.91737 0.91329 1.19870 0.80320 1.00479 1.07628 1.21201 0.78989 0.95364 1.04940 1.57267 1.14036 1.87633 1.23132 1.18829 0.90944 0.95523 0.80184 1.21812 1.35944 0.94019 1.06744 0.92972 1.25511 0.95140 1.00931 0.96281 1.69950 1.37868 1.34105 1.13678 0.85859 0.78490 0.81505 0.77340 1.19407 1.20523 1.20635 1.00704 0.72503 0.73870 0.72084 1.93531 1.42224 1.77070 1.85446 1.93456 1.66538 1.81273 1.56900 1.31199 1.20059 1.24660 1.10959 1.22630 0.93051 0.87184 0.94348 1.69603 1.17154 1.20168 1.19044 1.20886 0.94914 0.86909 0.93725 1.42271 1.34591 1.12111 1.22051 0.70391 1.26584 0.85404 0.97786 0.79837 1.68099 1.26020 0.98756 1.32787 1.23163 0.84115 0.97585 0.88490 1.20326 1.04282 0.94463 0.99020 0.86023 0.85197 0.88778 0.88548 0.93968 0.95303 0.92529 0.79021 0.69401 0.82226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.60 18.54 20.01 0.37 -15.22 16 2 C 0.24 6.61 15.43 89.44 1.38 7.99 16 3 C -0.04 -0.97 6.03 28.79 0.17 -0.80 16 4 C 0.12 3.72 5.63 86.38 0.49 4.21 16 5 N -0.98 -36.65 2.77 -519.83 -1.44 -38.09 16 6 C 0.27 11.95 5.10 85.64 0.44 12.38 16 7 C -0.55 -28.62 9.38 25.60 0.24 -28.38 16 8 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 9 C 0.02 1.15 5.46 84.65 0.46 1.61 16 10 N -0.92 -49.86 13.29 21.45 0.28 -49.57 16 11 Si 0.94 43.00 29.54 68.60 2.03 45.03 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 14 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 15 S 2.72 105.07 5.81 -56.49 -0.33 104.75 16 16 O -0.99 -47.00 16.99 -128.00 -2.17 -49.17 16 17 O -0.99 -39.19 16.33 -128.00 -2.09 -41.28 16 18 C -0.77 -24.74 6.27 22.42 0.14 -24.60 16 19 C 0.18 5.11 11.38 83.89 0.95 6.06 16 20 N -0.54 -14.17 11.16 -188.75 -2.11 -16.27 16 21 C 0.29 6.42 8.71 135.95 1.18 7.61 16 22 N -0.51 -4.64 5.35 -191.99 -1.03 -5.67 16 23 H 0.45 0.04 8.93 -92.71 -0.83 -0.79 16 24 C 0.39 2.84 12.26 180.44 2.21 5.05 16 25 N -0.54 -10.79 10.30 -198.43 -2.04 -12.83 16 26 C 0.22 6.31 11.34 84.70 0.96 7.27 16 27 C -0.17 -4.97 6.45 -20.10 -0.13 -5.09 16 28 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.13 2.79 8.14 -2.38 -0.02 2.77 16 30 H 0.09 2.93 8.11 -2.39 -0.02 2.91 16 31 H 0.10 2.81 6.92 -2.39 -0.02 2.80 16 32 H 0.04 1.84 8.11 -2.39 -0.02 1.82 16 33 H 0.03 1.36 5.26 -2.39 -0.01 1.35 16 34 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 35 H 0.19 4.69 8.06 -2.91 -0.02 4.66 16 36 H 0.29 -2.15 8.06 -2.91 -0.02 -2.18 16 37 H 0.16 5.55 5.73 -2.91 -0.02 5.53 16 Total: -1.00 -83.31 346.40 0.31 -83.01 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: 0.33 Total: 2.03 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 8.50 Total: -6.70 kcal Atomic # 7 Polarization: -131.70 SS G_CDS: -5.96 Total: -137.66 kcal Atomic # 8 Polarization: -86.19 SS G_CDS: -4.27 Total: -90.45 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 105.07 SS G_CDS: -0.33 Total: 104.75 kcal Total: -83.31 0.31 -83.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363968611.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.595 kcal (2) G-P(sol) polarization free energy of solvation -83.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds