Wall clock time and date at job start Tue Mar 31 2020 19:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86798 * 120.00241 * 2 1 4 4 H 1.48501 * 109.47129 * 239.99621 * 3 2 1 5 5 H 1.48499 * 109.47037 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47371 * 119.99603 * 3 2 1 7 7 C 1.39941 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00677 * 197.84739 * 7 2 1 9 9 C 1.41400 * 119.99851 * 17.85416 * 7 2 1 10 10 C 1.40715 * 120.24246 * 204.38138 * 9 7 2 11 11 C 1.37624 * 119.74579 * 180.02562 * 10 9 7 12 12 C 1.38630 * 120.24398 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.74630 * 179.97438 * 12 11 10 14 14 N 1.46499 * 109.47435 * 89.99951 * 13 12 11 15 15 S 1.65601 * 119.99905 * 164.99978 * 14 13 12 16 16 O 1.42095 * 106.40194 * 311.45683 * 15 14 13 17 17 O 1.42100 * 106.39886 * 178.54062 * 15 14 13 18 18 C 1.76198 * 107.21815 * 65.00124 * 15 14 13 19 19 C 1.38224 * 120.01287 * 115.00061 * 18 15 14 20 20 C 1.38225 * 120.02235 * 180.02562 * 19 18 15 21 21 C 1.38257 * 120.05223 * 359.95184 * 20 19 18 22 22 C 1.38179 * 120.03194 * 0.02562 * 21 20 19 23 23 C 1.38441 * 120.01418 * 295.01695 * 18 15 14 24 24 F 1.35096 * 120.02055 * 359.96036 * 23 18 15 25 25 C 1.38632 * 120.50663 * 0.25211 * 12 11 10 26 26 C 1.37630 * 120.24430 * 359.44871 * 25 12 11 27 27 H 0.97000 * 120.00000 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.12918 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.87643 * 180.02562 * 11 10 9 30 30 H 1.09002 * 109.46962 * 329.99813 * 13 12 11 31 31 H 1.09006 * 109.47008 * 210.00094 * 13 12 11 32 32 H 0.96998 * 119.99743 * 345.00185 * 14 13 12 33 33 H 1.07998 * 119.98371 * 0.02562 * 19 18 15 34 34 H 1.07998 * 119.96834 * 179.97438 * 20 19 18 35 35 H 1.08004 * 119.99051 * 179.74033 * 21 20 19 36 36 H 1.07994 * 120.01528 * 179.97438 * 22 21 20 37 37 H 1.07997 * 119.88300 * 179.70556 * 25 12 11 38 38 H 1.08000 * 120.12680 * 180.27175 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6964 1.2126 7 6 2.0078 -1.2119 0.0005 8 1 3.0489 -1.2345 0.2872 9 6 1.3519 -2.4072 -0.3744 10 6 1.8256 -3.6498 0.0854 11 6 1.1796 -4.8068 -0.2863 12 6 0.0666 -4.7511 -1.1108 13 6 -0.6319 -6.0250 -1.5113 14 7 -1.6750 -6.3388 -0.5317 15 16 -2.8417 -7.4568 -0.8940 16 8 -3.3372 -7.1168 -2.1816 17 8 -3.6705 -7.5587 0.2557 18 6 -2.0360 -9.0143 -1.0662 19 6 -2.3093 -10.0362 -0.1765 20 6 -1.6770 -11.2580 -0.3111 21 6 -0.7714 -11.4597 -1.3361 22 6 -0.4968 -10.4398 -2.2270 23 6 -1.1287 -9.2149 -2.0925 24 9 -0.8612 -8.2170 -2.9629 25 6 -0.4055 -3.5328 -1.5744 26 6 0.2210 -2.3627 -1.2105 27 1 -0.4850 0.8400 -0.0004 28 1 2.6933 -3.6956 0.7268 29 1 1.5411 -5.7616 0.0657 30 1 0.0910 -6.8401 -1.5461 31 1 -1.0837 -5.8978 -2.4951 32 1 -1.6823 -5.8917 0.3290 33 1 -3.0172 -9.8800 0.6240 34 1 -1.8909 -12.0557 0.3848 35 1 -0.2747 -12.4133 -1.4378 36 1 0.2110 -10.5975 -3.0273 37 1 -1.2707 -3.5014 -2.2201 38 1 -0.1510 -1.4143 -1.5692 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364012541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:48 Heat of formation + Delta-G solvation = -74.645480 kcal Electronic energy + Delta-G solvation = -25716.656914 eV Core-core repulsion = 21758.133030 eV Total energy + Delta-G solvation = -3958.523885 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.41161 -39.22625 -37.86646 -37.09143 -35.76636 -35.06859 -33.38774 -31.76710 -30.88045 -30.06247 -29.32311 -26.57444 -23.91051 -23.55222 -23.14947 -21.06494 -20.16328 -19.52323 -18.54445 -17.54788 -17.37367 -17.11922 -16.70243 -16.22467 -15.71876 -15.35008 -15.28446 -14.59755 -14.49323 -14.01649 -14.00111 -13.81888 -13.46832 -12.89812 -12.79356 -12.58781 -12.41281 -12.24448 -12.01901 -11.99422 -11.98003 -11.90822 -11.54236 -11.15001 -11.03377 -10.95058 -10.59095 -10.47876 -9.87786 -9.73809 -9.45906 -9.27826 -9.20662 -9.09612 -7.54604 -7.43452 -6.84875 -4.44281 0.25316 0.52459 0.76653 2.60039 2.92476 3.00432 3.02968 3.04274 3.09551 3.34767 3.67732 3.77957 3.86783 4.16903 4.42613 4.53250 4.61201 4.78293 4.96267 5.20513 5.44317 5.46922 5.57848 5.61092 5.66501 5.76374 5.86406 6.08572 6.23761 6.34903 6.38311 6.41983 6.89157 6.98935 7.18960 7.25405 7.32242 7.53160 7.77040 7.97247 8.03661 8.21213 8.55779 8.80372 8.88579 10.09055 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.024156 B = 0.002740 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.860054 B =10215.037367 C =10642.970572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.116 3.884 10 C -0.230 4.230 11 C -0.072 4.072 12 C -0.234 4.234 13 C 0.180 3.820 14 N -1.101 6.101 15 S 2.689 3.311 16 O -0.950 6.950 17 O -0.963 6.963 18 C -0.712 4.712 19 C 0.004 3.996 20 C -0.153 4.153 21 C -0.041 4.041 22 C -0.174 4.174 23 C 0.196 3.804 24 F -0.116 7.116 25 C -0.080 4.080 26 C -0.169 4.169 27 H 0.283 0.717 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.421 0.579 33 H 0.153 0.847 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.091 0.909 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.850 -18.630 -1.529 18.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.249 4.249 11 C -0.091 4.091 12 C -0.238 4.238 13 C 0.056 3.944 14 N -0.864 5.864 15 S 2.776 3.224 16 O -0.940 6.940 17 O -0.954 6.954 18 C -0.797 4.797 19 C -0.015 4.015 20 C -0.172 4.172 21 C -0.060 4.060 22 C -0.194 4.194 23 C 0.175 3.825 24 F -0.094 7.094 25 C -0.099 4.099 26 C -0.188 4.188 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.258 0.742 33 H 0.170 0.830 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.163 0.837 37 H 0.109 0.891 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.942 -18.421 -1.849 18.746 hybrid contribution 1.072 0.583 0.286 1.253 sum -1.871 -17.839 -1.563 18.005 Atomic orbital electron populations 1.69809 1.07642 1.29607 1.34022 1.25949 0.94753 1.01471 0.92174 0.86342 0.80162 0.80066 0.80041 1.18741 1.20257 1.18952 1.19627 0.98179 0.91303 1.39640 0.90327 1.17663 0.90908 0.92033 0.88034 1.20955 1.03985 0.92817 1.07192 1.20382 0.95235 0.96469 0.97020 1.18879 1.01637 0.92561 1.10697 1.20148 0.87850 0.96111 0.90310 1.55767 1.46876 1.55521 1.28269 1.02149 0.73330 0.72992 0.73933 1.93610 1.77135 1.81940 1.41311 1.93561 1.64665 1.86621 1.50508 1.31263 1.16705 1.25738 1.05948 1.20925 0.94898 0.90974 0.94680 1.21366 0.98390 0.97889 0.99582 1.21334 0.94232 0.98312 0.92073 1.21288 1.03017 0.92303 1.02748 1.17124 0.93174 0.85805 0.86402 1.91654 1.91913 1.58785 1.67010 1.20607 0.98009 0.92523 0.98810 1.21326 0.99510 0.96797 1.01183 0.90591 0.88944 0.89441 0.92915 0.90722 0.74233 0.82983 0.84351 0.84249 0.83717 0.89096 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.85 10.95 55.55 0.61 -19.24 16 2 C 0.08 1.84 5.14 -17.35 -0.09 1.75 16 3 Si 0.91 18.17 29.59 -169.99 -5.03 13.14 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.79 9.05 -37.74 -0.34 -12.13 16 8 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 9 C 0.12 3.00 5.57 -106.83 -0.60 2.41 16 10 C -0.23 -5.39 9.80 -38.87 -0.38 -5.77 16 11 C -0.07 -1.51 9.67 -39.66 -0.38 -1.90 16 12 C -0.23 -4.84 5.30 -104.33 -0.55 -5.39 16 13 C 0.18 3.08 4.68 -5.19 -0.02 3.05 16 14 N -1.10 -17.26 5.99 -11.65 -0.07 -17.33 16 15 S 2.69 40.54 5.48 -107.50 -0.59 39.95 16 16 O -0.95 -17.13 16.90 -57.17 -0.97 -18.09 16 17 O -0.96 -15.67 16.97 -57.17 -0.97 -16.64 16 18 C -0.71 -9.02 5.89 -39.51 -0.23 -9.25 16 19 C 0.00 0.04 9.55 -39.59 -0.38 -0.33 16 20 C -0.15 -1.20 10.04 -39.58 -0.40 -1.60 16 21 C -0.04 -0.30 10.04 -39.60 -0.40 -0.70 16 22 C -0.17 -1.62 10.03 -39.51 -0.40 -2.02 16 23 C 0.20 2.43 6.80 -39.42 -0.27 2.16 16 24 F -0.12 -1.61 12.93 2.25 0.03 -1.58 16 25 C -0.08 -1.82 9.67 -39.66 -0.38 -2.21 16 26 C -0.17 -4.26 8.70 -38.87 -0.34 -4.60 16 27 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 28 H 0.09 2.05 8.06 -52.49 -0.42 1.62 16 29 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.05 0.81 6.68 -51.93 -0.35 0.46 16 31 H 0.07 1.29 7.19 -51.93 -0.37 0.92 16 32 H 0.42 6.41 8.64 -34.47 -0.30 6.12 16 33 H 0.15 1.38 7.33 -52.49 -0.38 0.99 16 34 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.14 0.56 8.06 -52.48 -0.42 0.13 16 36 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.12 3.11 6.16 -52.49 -0.32 2.78 16 LS Contribution 340.62 15.07 5.13 5.13 Total: -1.00 -30.76 340.62 -10.83 -41.59 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -3.81 Total: 9.60 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: -5.16 Total: -36.53 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.54 Total: -36.57 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -1.94 Total: -34.73 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.03 Total: -1.58 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Atomic # 16 Polarization: 40.54 SS G_CDS: -0.59 Total: 39.95 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.76 -10.83 -41.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364012541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.053 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds