Wall clock time and date at job start Tue Mar 31 2020 19:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86798 * 120.00241 * 2 1 4 4 H 1.48501 * 109.47129 * 239.99621 * 3 2 1 5 5 H 1.48499 * 109.47037 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47371 * 119.99603 * 3 2 1 7 7 C 1.39941 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00677 * 197.84739 * 7 2 1 9 9 C 1.41400 * 119.99851 * 17.85416 * 7 2 1 10 10 C 1.40715 * 120.24246 * 204.38138 * 9 7 2 11 11 C 1.37624 * 119.74579 * 180.02562 * 10 9 7 12 12 C 1.38630 * 120.24398 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.74630 * 179.97438 * 12 11 10 14 14 N 1.46499 * 109.47435 * 89.99951 * 13 12 11 15 15 S 1.65601 * 119.99905 * 164.99978 * 14 13 12 16 16 O 1.42095 * 106.40194 * 311.45683 * 15 14 13 17 17 O 1.42100 * 106.39886 * 178.54062 * 15 14 13 18 18 C 1.76198 * 107.21815 * 65.00124 * 15 14 13 19 19 C 1.38224 * 120.01287 * 115.00061 * 18 15 14 20 20 C 1.38225 * 120.02235 * 180.02562 * 19 18 15 21 21 C 1.38257 * 120.05223 * 359.95184 * 20 19 18 22 22 C 1.38179 * 120.03194 * 0.02562 * 21 20 19 23 23 C 1.38441 * 120.01418 * 295.01695 * 18 15 14 24 24 F 1.35096 * 120.02055 * 359.96036 * 23 18 15 25 25 C 1.38632 * 120.50663 * 0.25211 * 12 11 10 26 26 C 1.37630 * 120.24430 * 359.44871 * 25 12 11 27 27 H 0.97000 * 120.00000 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.12918 * 359.97438 * 10 9 7 29 29 H 1.07994 * 119.87643 * 180.02562 * 11 10 9 30 30 H 1.09002 * 109.46962 * 329.99813 * 13 12 11 31 31 H 1.09006 * 109.47008 * 210.00094 * 13 12 11 32 32 H 0.96998 * 119.99743 * 345.00185 * 14 13 12 33 33 H 1.07998 * 119.98371 * 0.02562 * 19 18 15 34 34 H 1.07998 * 119.96834 * 179.97438 * 20 19 18 35 35 H 1.08004 * 119.99051 * 179.74033 * 21 20 19 36 36 H 1.07994 * 120.01528 * 179.97438 * 22 21 20 37 37 H 1.07997 * 119.88300 * 179.70556 * 25 12 11 38 38 H 1.08000 * 120.12680 * 180.27175 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6964 1.2126 7 6 2.0078 -1.2119 0.0005 8 1 3.0489 -1.2345 0.2872 9 6 1.3519 -2.4072 -0.3744 10 6 1.8256 -3.6498 0.0854 11 6 1.1796 -4.8068 -0.2863 12 6 0.0666 -4.7511 -1.1108 13 6 -0.6319 -6.0250 -1.5113 14 7 -1.6750 -6.3388 -0.5317 15 16 -2.8417 -7.4568 -0.8940 16 8 -3.3372 -7.1168 -2.1816 17 8 -3.6705 -7.5587 0.2557 18 6 -2.0360 -9.0143 -1.0662 19 6 -2.3093 -10.0362 -0.1765 20 6 -1.6770 -11.2580 -0.3111 21 6 -0.7714 -11.4597 -1.3361 22 6 -0.4968 -10.4398 -2.2270 23 6 -1.1287 -9.2149 -2.0925 24 9 -0.8612 -8.2170 -2.9629 25 6 -0.4055 -3.5328 -1.5744 26 6 0.2210 -2.3627 -1.2105 27 1 -0.4850 0.8400 -0.0004 28 1 2.6933 -3.6956 0.7268 29 1 1.5411 -5.7616 0.0657 30 1 0.0910 -6.8401 -1.5461 31 1 -1.0837 -5.8978 -2.4951 32 1 -1.6823 -5.8917 0.3290 33 1 -3.0172 -9.8800 0.6240 34 1 -1.8909 -12.0557 0.3848 35 1 -0.2747 -12.4133 -1.4378 36 1 0.2110 -10.5975 -3.0273 37 1 -1.2707 -3.5014 -2.2201 38 1 -0.1510 -1.4143 -1.5692 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364012541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:47 Heat of formation + Delta-G solvation = -94.216734 kcal Electronic energy + Delta-G solvation = -25717.505588 eV Core-core repulsion = 21758.133030 eV Total energy + Delta-G solvation = -3959.372558 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.33583 -39.93751 -39.62532 -38.38278 -37.06223 -36.62703 -35.08760 -32.50545 -31.83163 -31.57609 -31.14429 -28.26483 -25.27423 -24.62612 -23.89501 -22.89582 -21.90108 -20.64979 -19.54121 -19.23249 -18.68747 -18.05964 -17.69300 -17.30833 -17.20531 -16.75558 -16.09982 -15.95829 -15.66090 -15.60948 -15.26051 -15.19024 -14.53161 -14.27815 -13.99120 -13.84158 -13.77187 -13.61995 -13.51149 -13.31889 -13.24996 -13.18052 -12.81512 -12.72553 -12.67660 -12.35880 -12.10180 -11.87348 -11.48532 -11.27160 -11.03652 -10.63810 -10.45561 -9.94284 -9.39016 -9.27785 -8.66324 -6.36202 -0.78048 -0.39921 0.05886 0.88961 1.14532 1.37956 1.48237 1.51498 1.96198 2.19621 2.33838 2.58321 2.72520 2.94250 3.23513 3.67155 3.73947 3.92006 4.00860 4.17552 4.21749 4.29119 4.51149 4.52085 4.58264 4.66362 4.75281 4.91131 4.99790 5.06037 5.07856 5.14303 5.23029 5.36176 5.43421 5.69183 5.72142 5.90598 6.03804 6.09213 6.21495 6.36500 6.68623 6.91955 7.01603 8.30069 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.024156 B = 0.002740 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.860054 B =10215.037367 C =10642.970572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.497 4.497 8 H 0.078 0.922 9 C 0.085 3.915 10 C -0.242 4.242 11 C -0.068 4.068 12 C -0.221 4.221 13 C 0.187 3.813 14 N -1.105 6.105 15 S 2.704 3.296 16 O -0.987 6.987 17 O -0.980 6.980 18 C -0.723 4.723 19 C -0.010 4.010 20 C -0.143 4.143 21 C -0.027 4.027 22 C -0.174 4.174 23 C 0.163 3.837 24 F -0.133 7.133 25 C -0.089 4.089 26 C -0.193 4.193 27 H 0.289 0.711 28 H 0.101 0.899 29 H 0.124 0.876 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.423 0.577 33 H 0.159 0.841 34 H 0.176 0.824 35 H 0.184 0.816 36 H 0.167 0.833 37 H 0.100 0.900 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.869 -21.949 -1.087 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.526 4.526 8 H 0.097 0.903 9 C 0.082 3.918 10 C -0.262 4.262 11 C -0.087 4.087 12 C -0.224 4.224 13 C 0.062 3.938 14 N -0.867 5.867 15 S 2.796 3.204 16 O -0.977 6.977 17 O -0.970 6.970 18 C -0.812 4.812 19 C -0.029 4.029 20 C -0.161 4.161 21 C -0.045 4.045 22 C -0.193 4.193 23 C 0.143 3.857 24 F -0.112 7.112 25 C -0.108 4.108 26 C -0.213 4.213 27 H 0.099 0.901 28 H 0.119 0.881 29 H 0.141 0.859 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.259 0.741 33 H 0.176 0.824 34 H 0.193 0.807 35 H 0.201 0.799 36 H 0.184 0.816 37 H 0.118 0.882 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.978 -21.697 -1.397 21.832 hybrid contribution 0.707 1.262 0.144 1.454 sum -1.271 -20.436 -1.253 20.513 Atomic orbital electron populations 1.69872 1.09096 1.30732 1.35045 1.26793 0.95466 1.04662 0.91189 0.85249 0.78777 0.75560 0.80123 1.18490 1.19348 1.18184 1.19878 0.98485 0.92515 1.41751 0.90343 1.18002 0.91611 0.93291 0.88855 1.21183 1.04571 0.92958 1.07493 1.20715 0.94605 0.97220 0.96139 1.19225 1.01140 0.93230 1.08822 1.20055 0.88395 0.95018 0.90298 1.55541 1.46521 1.56695 1.27924 1.01246 0.72938 0.73487 0.72719 1.93561 1.78200 1.83215 1.42762 1.93532 1.65409 1.87163 1.50902 1.30706 1.18173 1.24417 1.07923 1.21210 0.95601 0.91628 0.94506 1.21845 0.96965 0.97438 0.99892 1.21907 0.92984 0.99234 0.90342 1.21680 1.02650 0.91311 1.03650 1.17508 0.94602 0.86877 0.86736 1.91601 1.92202 1.59758 1.67613 1.20818 0.98209 0.92793 0.99012 1.21269 1.00551 0.96921 1.02549 0.90074 0.88104 0.85859 0.90458 0.91138 0.74064 0.82374 0.80663 0.79916 0.81558 0.88214 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.26 10.95 21.82 0.24 -43.02 16 2 C 0.03 1.73 5.14 85.26 0.44 2.17 16 3 Si 0.98 38.06 29.59 68.60 2.03 40.09 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 6 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 7 C -0.50 -26.60 9.05 23.46 0.21 -26.39 16 8 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 9 C 0.08 4.55 5.57 -21.29 -0.12 4.43 16 10 C -0.24 -11.49 9.80 22.73 0.22 -11.27 16 11 C -0.07 -2.79 9.67 22.22 0.21 -2.58 16 12 C -0.22 -9.07 5.30 -19.68 -0.10 -9.17 16 13 C 0.19 6.26 4.68 85.63 0.40 6.66 16 14 N -1.11 -34.23 5.99 -190.78 -1.14 -35.37 16 15 S 2.70 81.40 5.48 -56.49 -0.31 81.09 16 16 O -0.99 -36.34 16.90 -128.00 -2.16 -38.50 16 17 O -0.98 -31.81 16.97 -128.00 -2.17 -33.98 16 18 C -0.72 -17.26 5.89 22.31 0.13 -17.13 16 19 C -0.01 -0.18 9.55 22.26 0.21 0.03 16 20 C -0.14 -1.56 10.04 22.27 0.22 -1.33 16 21 C -0.03 -0.25 10.04 22.26 0.22 -0.03 16 22 C -0.17 -2.60 10.03 22.31 0.22 -2.38 16 23 C 0.16 3.76 6.80 22.38 0.15 3.91 16 24 F -0.13 -3.62 12.93 44.97 0.58 -3.04 16 25 C -0.09 -4.17 9.67 22.22 0.21 -3.95 16 26 C -0.19 -10.23 8.70 22.73 0.20 -10.04 16 27 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 28 H 0.10 4.49 8.06 -2.91 -0.02 4.46 16 29 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 30 H 0.08 2.24 6.68 -2.39 -0.02 2.22 16 31 H 0.07 2.44 7.19 -2.38 -0.02 2.42 16 32 H 0.42 12.79 8.64 -96.74 -0.84 11.95 16 33 H 0.16 2.54 7.33 -2.91 -0.02 2.52 16 34 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 35 H 0.18 0.18 8.06 -2.91 -0.02 0.15 16 36 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 37 H 0.10 4.36 8.06 -2.91 -0.02 4.34 16 38 H 0.10 5.53 6.16 -2.91 -0.02 5.51 16 Total: -1.00 -70.28 340.62 0.19 -70.09 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.28 Total: 29.72 kcal Atomic # 6 Polarization: -69.92 SS G_CDS: 2.85 Total: -67.07 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -0.90 Total: -78.39 kcal Atomic # 8 Polarization: -68.15 SS G_CDS: -4.34 Total: -72.48 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.58 Total: -3.04 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Atomic # 16 Polarization: 81.40 SS G_CDS: -0.31 Total: 81.09 kcal Total: -70.28 0.19 -70.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364012541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.126 kcal (2) G-P(sol) polarization free energy of solvation -70.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds