Wall clock time and date at job start Tue Mar 31 2020 18:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46495 * 120.00135 * 2 1 4 4 C 1.50700 * 109.47141 * 270.00183 * 3 2 1 5 5 N 1.30106 * 126.23256 * 90.02193 * 4 3 2 6 6 N 1.28650 * 109.50390 * 179.97438 * 5 4 3 7 7 C 1.30865 * 109.34103 * 0.02562 * 6 5 4 8 8 O 1.35417 * 126.34925 * 180.02562 * 7 6 5 9 9 O 1.34505 * 107.29946 * 359.77110 * 7 6 5 10 10 C 1.34775 * 119.99642 * 180.02562 * 2 1 3 11 11 O 1.21557 * 119.99754 * 183.87831 * 10 2 1 12 12 C 1.47869 * 120.00408 * 3.87563 * 10 2 1 13 13 C 1.39676 * 120.09525 * 328.61605 * 12 10 2 14 14 C 1.38041 * 120.03275 * 179.97438 * 13 12 10 15 15 C 1.38175 * 120.24723 * 0.02562 * 14 13 12 16 16 C 1.39183 * 120.19940 * 0.02562 * 15 14 13 17 17 S 1.76204 * 120.02006 * 180.02562 * 16 15 14 18 18 C 1.76203 * 99.99780 * 267.25438 * 17 16 15 19 19 H 1.08000 * 120.00149 * 5.38238 * 18 17 16 20 20 C 1.38729 * 119.99633 * 185.37599 * 18 17 16 21 21 N 1.31624 * 120.00317 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99847 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47116 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46609 * 120.00241 * 22 20 18 25 25 H 1.48497 * 109.47485 * 240.00302 * 22 20 18 26 26 C 1.38874 * 119.95860 * 359.97438 * 16 15 14 27 27 H 1.09004 * 109.46510 * 274.37005 * 1 2 3 28 28 H 1.08998 * 109.47125 * 34.36609 * 1 2 3 29 29 H 1.09002 * 109.47138 * 154.37103 * 1 2 3 30 30 H 1.08997 * 109.47409 * 30.00084 * 3 2 1 31 31 H 1.09004 * 109.47052 * 150.00325 * 3 2 1 32 32 H 0.96701 * 114.00043 * 89.98501 * 8 7 6 33 33 H 1.07994 * 119.98355 * 359.97438 * 13 12 10 34 34 H 1.07999 * 119.87518 * 180.02562 * 14 13 12 35 35 H 1.07995 * 119.90390 * 179.97438 * 15 14 13 36 36 H 0.96998 * 120.00201 * 179.97438 * 21 20 18 37 37 H 1.08008 * 120.11700 * 180.29379 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 7 1.6682 2.4508 -2.1457 6 7 2.1944 2.6217 -3.3071 7 6 3.3362 1.9846 -3.3636 8 8 4.1754 1.9342 -4.4252 9 8 3.5241 1.3940 -2.1699 10 6 2.1389 -1.1672 -0.0005 11 8 3.3524 -1.1685 0.0707 12 6 1.4021 -2.4463 -0.0876 13 6 0.1238 -2.5573 0.4643 14 6 -0.5631 -3.7518 0.3818 15 6 0.0092 -4.8419 -0.2455 16 6 1.2828 -4.7427 -0.7980 17 16 2.0078 -6.1356 -1.5975 18 6 2.8947 -6.8367 -0.2459 19 1 2.7900 -6.4179 0.7441 20 6 3.7273 -7.9267 -0.4535 21 7 3.8553 -8.4369 -1.6601 22 14 4.6681 -8.6696 0.9792 23 1 4.3537 -7.9181 2.2207 24 1 4.2720 -10.0909 1.1477 25 1 6.1260 -8.5909 0.7082 26 6 1.9814 -3.5450 -0.7198 27 1 -0.3632 0.0783 1.0247 28 1 -0.3633 0.8483 -0.5801 29 1 -0.3633 -0.9266 -0.4445 30 1 1.6086 2.0283 0.5138 31 1 3.1501 1.1383 0.5138 32 1 4.8358 2.6405 -4.4384 33 1 -0.3273 -1.7081 0.9559 34 1 -1.5514 -3.8347 0.8091 35 1 -0.5329 -5.7739 -0.3065 36 1 4.4377 -9.1988 -1.8053 37 1 2.9680 -3.4639 -1.1519 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364511901.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:18 Heat of formation + Delta-G solvation = 23.718677 kcal Electronic energy + Delta-G solvation = -25354.743967 eV Core-core repulsion = 21420.405434 eV Total energy + Delta-G solvation = -3934.338533 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.53468 -40.49173 -38.46933 -38.00888 -36.57787 -36.12380 -32.52867 -32.44000 -30.76256 -30.55265 -28.13756 -26.81215 -25.58867 -23.96852 -23.74511 -22.59428 -22.31255 -20.12086 -19.94253 -18.17372 -18.00347 -17.27104 -17.04247 -16.75323 -16.29240 -16.17636 -15.37543 -14.98351 -14.86634 -14.67023 -14.26325 -13.88315 -13.40013 -13.32437 -13.20986 -13.01560 -12.86276 -12.81032 -12.64124 -12.30218 -12.10351 -11.37626 -11.30284 -11.26494 -11.11990 -11.08723 -10.71636 -10.21647 -9.94554 -9.80446 -9.27648 -9.18933 -9.00215 -8.67172 -8.04923 -6.74517 -6.30603 -4.05082 0.58798 1.10306 1.34043 1.58873 1.86497 2.61865 2.79104 3.14051 3.18678 3.21459 3.27728 3.44116 3.85836 3.96811 4.20572 4.35529 4.64527 4.74493 4.77815 4.81605 4.93207 5.05742 5.10040 5.16359 5.19517 5.20764 5.44869 5.48209 5.65478 5.79739 5.86139 6.01681 6.18384 6.46737 6.48434 6.57114 6.83832 6.99367 7.13236 7.56244 7.84389 7.93922 8.31321 9.15492 10.76180 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013939 B = 0.002981 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.301376 B = 9391.647335 C =10273.488293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.614 5.614 3 C 0.213 3.787 4 C 0.160 3.840 5 N -0.263 5.263 6 N -0.272 5.272 7 C 0.339 3.661 8 O -0.400 6.400 9 O -0.223 6.223 10 C 0.566 3.434 11 O -0.519 6.519 12 C -0.154 4.154 13 C -0.104 4.104 14 C -0.141 4.141 15 C -0.054 4.054 16 C -0.105 4.105 17 S -0.036 6.036 18 C -0.519 4.519 19 H 0.077 0.923 20 C 0.073 3.927 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.278 1.278 26 C -0.020 4.020 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.134 0.866 31 H 0.122 0.878 32 H 0.420 0.580 33 H 0.138 0.862 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.269 0.731 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.293 21.685 3.200 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.349 5.349 3 C 0.087 3.913 4 C -0.052 4.052 5 N -0.113 5.113 6 N -0.133 5.133 7 C 0.090 3.910 8 O -0.207 6.207 9 O -0.103 6.103 10 C 0.357 3.643 11 O -0.394 6.394 12 C -0.159 4.159 13 C -0.123 4.123 14 C -0.161 4.161 15 C -0.075 4.075 16 C -0.215 4.215 17 S 0.198 5.802 18 C -0.666 4.666 19 H 0.095 0.905 20 C -0.136 4.136 21 N -0.505 5.505 22 Si 0.747 3.253 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.204 1.204 26 C -0.042 4.042 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.151 0.849 31 H 0.140 0.860 32 H 0.280 0.720 33 H 0.155 0.845 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.079 0.921 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.776 21.312 1.433 22.409 hybrid contribution 2.141 -0.337 2.190 3.081 sum -4.635 20.975 3.623 21.785 Atomic orbital electron populations 1.22649 0.78314 1.05302 1.02336 1.47782 1.07727 1.04414 1.74981 1.19855 1.01156 0.87090 0.83169 1.28465 0.82621 0.96320 0.97803 1.74424 1.24089 1.15212 0.97607 1.74919 1.06147 1.19144 1.13132 1.24494 0.92020 0.93099 0.81424 1.85046 1.47318 1.56007 1.32285 1.84985 1.42508 1.59681 1.23149 1.18720 0.87097 0.83538 0.74953 1.90812 1.13568 1.87031 1.48005 1.19674 0.96081 0.93560 1.06590 1.21757 0.93200 0.98426 0.98882 1.21110 1.00376 0.93042 1.01573 1.21998 0.94427 0.98271 0.92808 1.22841 0.96902 1.00042 1.01761 1.83628 1.59955 1.20038 1.16558 1.22880 1.31179 1.17921 0.94662 0.90513 1.25009 0.95759 0.95995 0.96823 1.69995 1.36839 1.23241 1.20469 0.86060 0.79280 0.78744 0.81194 1.19453 1.20460 1.20418 1.21876 0.98753 0.90192 0.93392 0.91300 0.90585 0.88208 0.84854 0.86041 0.71992 0.84496 0.85655 0.85002 0.92090 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.43 8.79 59.85 0.53 0.95 16 2 N -0.61 -6.70 2.86 -184.06 -0.53 -7.22 16 3 C 0.21 1.88 6.08 -5.20 -0.03 1.84 16 4 C 0.16 1.85 8.06 -13.01 -0.10 1.74 16 5 N -0.26 -3.26 12.21 32.58 0.40 -2.86 16 6 N -0.27 -3.56 12.25 29.24 0.36 -3.20 16 7 C 0.34 4.04 9.79 52.35 0.51 4.55 16 8 O -0.40 -3.50 13.63 -41.04 -0.56 -4.06 16 9 O -0.22 -2.94 10.89 -18.95 -0.21 -3.15 16 10 C 0.57 8.76 7.45 -12.32 -0.09 8.67 16 11 O -0.52 -9.80 16.30 5.32 0.09 -9.72 16 12 C -0.15 -2.52 5.47 -105.00 -0.57 -3.10 16 13 C -0.10 -1.35 7.44 -39.12 -0.29 -1.64 16 14 C -0.14 -1.92 10.02 -39.68 -0.40 -2.32 16 15 C -0.05 -0.95 9.79 -39.25 -0.38 -1.33 16 16 C -0.10 -2.22 5.45 -39.00 -0.21 -2.43 16 17 S -0.04 -0.93 21.41 -107.50 -2.30 -3.23 16 18 C -0.52 -14.66 9.46 30.91 0.29 -14.37 16 19 H 0.08 2.16 7.79 -52.49 -0.41 1.75 16 20 C 0.07 2.05 5.49 -17.46 -0.10 1.96 16 21 N -0.87 -25.46 13.22 55.49 0.73 -24.72 16 22 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C -0.02 -0.41 9.35 -38.92 -0.36 -0.78 16 27 H 0.07 0.35 7.41 -51.93 -0.38 -0.04 16 28 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 29 H 0.10 0.87 4.74 -51.93 -0.25 0.63 16 30 H 0.13 0.63 8.07 -51.93 -0.42 0.21 16 31 H 0.12 1.08 7.37 -51.93 -0.38 0.69 16 32 H 0.42 0.86 9.06 45.56 0.41 1.28 16 33 H 0.14 1.23 4.75 -52.49 -0.25 0.98 16 34 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 35 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.13 2.92 7.95 -52.48 -0.42 2.51 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -37.24 345.96 -5.54 -42.78 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -2.50 Total: -0.05 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -1.22 Total: -6.24 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.96 Total: -38.01 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.68 Total: -16.93 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -2.30 Total: -3.23 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.24 -5.54 -42.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364511901.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.500 kcal (2) G-P(sol) polarization free energy of solvation -37.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds