Wall clock time and date at job start Tue Mar 31 2020 18:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46495 * 120.00135 * 2 1 4 4 C 1.50700 * 109.47141 * 270.00183 * 3 2 1 5 5 N 1.30106 * 126.23256 * 90.02193 * 4 3 2 6 6 N 1.28650 * 109.50390 * 179.97438 * 5 4 3 7 7 C 1.30865 * 109.34103 * 0.02562 * 6 5 4 8 8 O 1.35417 * 126.34925 * 180.02562 * 7 6 5 9 9 O 1.34505 * 107.29946 * 359.77110 * 7 6 5 10 10 C 1.34775 * 119.99642 * 180.02562 * 2 1 3 11 11 O 1.21557 * 119.99754 * 183.87831 * 10 2 1 12 12 C 1.47869 * 120.00408 * 3.87563 * 10 2 1 13 13 C 1.39676 * 120.09525 * 328.61605 * 12 10 2 14 14 C 1.38041 * 120.03275 * 179.97438 * 13 12 10 15 15 C 1.38175 * 120.24723 * 0.02562 * 14 13 12 16 16 C 1.39183 * 120.19940 * 0.02562 * 15 14 13 17 17 S 1.76204 * 120.02006 * 180.02562 * 16 15 14 18 18 C 1.76203 * 99.99780 * 267.25438 * 17 16 15 19 19 H 1.08000 * 120.00149 * 5.38238 * 18 17 16 20 20 C 1.38729 * 119.99633 * 185.37599 * 18 17 16 21 21 N 1.31624 * 120.00317 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99847 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47116 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46609 * 120.00241 * 22 20 18 25 25 H 1.48497 * 109.47485 * 240.00302 * 22 20 18 26 26 C 1.38874 * 119.95860 * 359.97438 * 16 15 14 27 27 H 1.09004 * 109.46510 * 274.37005 * 1 2 3 28 28 H 1.08998 * 109.47125 * 34.36609 * 1 2 3 29 29 H 1.09002 * 109.47138 * 154.37103 * 1 2 3 30 30 H 1.08997 * 109.47409 * 30.00084 * 3 2 1 31 31 H 1.09004 * 109.47052 * 150.00325 * 3 2 1 32 32 H 0.96701 * 114.00043 * 89.98501 * 8 7 6 33 33 H 1.07994 * 119.98355 * 359.97438 * 13 12 10 34 34 H 1.07999 * 119.87518 * 180.02562 * 14 13 12 35 35 H 1.07995 * 119.90390 * 179.97438 * 15 14 13 36 36 H 0.96998 * 120.00201 * 179.97438 * 21 20 18 37 37 H 1.08008 * 120.11700 * 180.29379 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 7 1.6682 2.4508 -2.1457 6 7 2.1944 2.6217 -3.3071 7 6 3.3362 1.9846 -3.3636 8 8 4.1754 1.9342 -4.4252 9 8 3.5241 1.3940 -2.1699 10 6 2.1389 -1.1672 -0.0005 11 8 3.3524 -1.1685 0.0707 12 6 1.4021 -2.4463 -0.0876 13 6 0.1238 -2.5573 0.4643 14 6 -0.5631 -3.7518 0.3818 15 6 0.0092 -4.8419 -0.2455 16 6 1.2828 -4.7427 -0.7980 17 16 2.0078 -6.1356 -1.5975 18 6 2.8947 -6.8367 -0.2459 19 1 2.7900 -6.4179 0.7441 20 6 3.7273 -7.9267 -0.4535 21 7 3.8553 -8.4369 -1.6601 22 14 4.6681 -8.6696 0.9792 23 1 4.3537 -7.9181 2.2207 24 1 4.2720 -10.0909 1.1477 25 1 6.1260 -8.5909 0.7082 26 6 1.9814 -3.5450 -0.7198 27 1 -0.3632 0.0783 1.0247 28 1 -0.3633 0.8483 -0.5801 29 1 -0.3633 -0.9266 -0.4445 30 1 1.6086 2.0283 0.5138 31 1 3.1501 1.1383 0.5138 32 1 4.8358 2.6405 -4.4384 33 1 -0.3273 -1.7081 0.9559 34 1 -1.5514 -3.8347 0.8091 35 1 -0.5329 -5.7739 -0.3065 36 1 4.4377 -9.1988 -1.8053 37 1 2.9680 -3.4639 -1.1519 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364511901.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:17 Heat of formation + Delta-G solvation = -9.673129 kcal Electronic energy + Delta-G solvation = -25356.191944 eV Core-core repulsion = 21420.405434 eV Total energy + Delta-G solvation = -3935.786510 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.44144 -41.61725 -39.34841 -39.13494 -37.51421 -37.13455 -34.67602 -33.43941 -32.05544 -31.69177 -28.95365 -27.77509 -27.69987 -24.88688 -24.78867 -23.81041 -23.44036 -21.16628 -20.82642 -19.90653 -19.00884 -18.52046 -18.05822 -17.85449 -17.29708 -17.18027 -16.95544 -16.40247 -16.19378 -15.81723 -15.44658 -15.10886 -14.79510 -14.56894 -14.16555 -13.94126 -13.87215 -13.76177 -13.59364 -13.39199 -13.24591 -13.24403 -12.99956 -12.71695 -12.55408 -12.25378 -12.15830 -11.74943 -11.37025 -11.23662 -10.84396 -10.63748 -10.20679 -9.93439 -9.66594 -8.83644 -8.41494 -6.22056 -0.26906 -0.17444 0.21885 0.52826 0.96051 1.27511 1.34846 1.43349 1.51605 1.70853 1.84154 2.21707 2.36936 2.69753 2.91521 3.05910 3.35664 3.39814 3.78215 3.91844 3.95193 4.02423 4.09694 4.20481 4.22230 4.35861 4.44738 4.47702 4.65522 4.68973 4.88044 4.94457 5.15662 5.19641 5.30968 5.36331 5.48671 5.84732 5.99613 6.01957 6.13816 6.83078 6.93415 6.98925 8.65752 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013939 B = 0.002981 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.301376 B = 9391.647335 C =10273.488293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.602 5.602 3 C 0.210 3.790 4 C 0.159 3.841 5 N -0.268 5.268 6 N -0.295 5.295 7 C 0.343 3.657 8 O -0.404 6.404 9 O -0.245 6.245 10 C 0.563 3.437 11 O -0.567 6.567 12 C -0.158 4.158 13 C -0.074 4.074 14 C -0.120 4.120 15 C -0.064 4.064 16 C -0.129 4.129 17 S -0.099 6.099 18 C -0.535 4.535 19 H 0.067 0.933 20 C 0.019 3.981 21 N -0.906 5.906 22 Si 0.993 3.007 23 H -0.266 1.266 24 H -0.264 1.264 25 H -0.272 1.272 26 C -0.049 4.049 27 H 0.113 0.887 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.185 0.815 31 H 0.119 0.881 32 H 0.446 0.554 33 H 0.194 0.806 34 H 0.179 0.821 35 H 0.134 0.866 36 H 0.274 0.726 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.711 23.997 5.904 26.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.334 5.334 3 C 0.086 3.914 4 C -0.054 4.054 5 N -0.118 5.118 6 N -0.156 5.156 7 C 0.094 3.906 8 O -0.215 6.215 9 O -0.127 6.127 10 C 0.353 3.647 11 O -0.446 6.446 12 C -0.163 4.163 13 C -0.092 4.092 14 C -0.140 4.140 15 C -0.085 4.085 16 C -0.240 4.240 17 S 0.136 5.864 18 C -0.682 4.682 19 H 0.085 0.915 20 C -0.186 4.186 21 N -0.543 5.543 22 Si 0.815 3.185 23 H -0.190 1.190 24 H -0.189 1.189 25 H -0.198 1.198 26 C -0.071 4.071 27 H 0.131 0.869 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.202 0.798 31 H 0.137 0.863 32 H 0.312 0.688 33 H 0.211 0.789 34 H 0.197 0.803 35 H 0.152 0.848 36 H 0.083 0.917 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.234 23.685 4.116 25.753 hybrid contribution 2.787 -0.835 1.299 3.187 sum -6.446 22.850 5.415 24.352 Atomic orbital electron populations 1.22984 0.75786 1.05544 1.05293 1.47793 1.09227 1.03608 1.72798 1.20362 1.02047 0.87092 0.81925 1.29028 0.81997 0.95932 0.98433 1.74352 1.24254 1.15597 0.97555 1.74872 1.06781 1.20249 1.13740 1.24672 0.92225 0.92220 0.81493 1.85004 1.47812 1.57584 1.31104 1.85011 1.43559 1.60250 1.23887 1.18652 0.86509 0.84593 0.74941 1.90790 1.15561 1.87774 1.50478 1.19830 0.97571 0.92931 1.05949 1.22406 0.90961 0.99801 0.96014 1.21635 1.02033 0.91256 0.99037 1.22102 0.92942 1.00230 0.93190 1.22462 0.98743 0.97987 1.04804 1.83492 1.60877 1.23506 1.18568 1.23089 1.31859 1.18503 0.94770 0.91506 1.26019 0.96549 0.96266 0.99755 1.70114 1.37669 1.23874 1.22610 0.84989 0.77752 0.78281 0.77520 1.18994 1.18916 1.19764 1.21540 0.97859 0.91847 0.95867 0.86922 0.88992 0.89159 0.79814 0.86327 0.68777 0.78948 0.80320 0.84818 0.91686 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 8.79 127.77 1.12 1.55 16 2 N -0.60 -11.18 2.86 -854.52 -2.44 -13.62 16 3 C 0.21 3.10 6.08 85.63 0.52 3.62 16 4 C 0.16 3.43 8.06 88.36 0.71 4.14 16 5 N -0.27 -6.21 12.21 -165.32 -2.02 -8.22 16 6 N -0.29 -7.49 12.25 -289.31 -3.54 -11.03 16 7 C 0.34 8.08 9.79 130.39 1.28 9.35 16 8 O -0.40 -6.89 13.63 -65.03 -0.89 -7.78 16 9 O -0.25 -6.46 10.89 13.99 0.15 -6.31 16 10 C 0.56 16.86 7.45 86.79 0.65 17.51 16 11 O -0.57 -22.02 16.30 -3.90 -0.06 -22.09 16 12 C -0.16 -5.01 5.47 -20.11 -0.11 -5.12 16 13 C -0.07 -1.59 7.44 22.57 0.17 -1.42 16 14 C -0.12 -2.75 10.02 22.21 0.22 -2.52 16 15 C -0.06 -2.18 9.79 22.48 0.22 -1.96 16 16 C -0.13 -5.70 5.45 22.65 0.12 -5.57 16 17 S -0.10 -5.47 21.41 -56.49 -1.21 -6.68 16 18 C -0.54 -31.79 9.46 67.94 0.64 -31.14 16 19 H 0.07 3.94 7.79 -2.91 -0.02 3.92 16 20 C 0.02 1.12 5.49 84.84 0.47 1.58 16 21 N -0.91 -55.14 13.22 21.64 0.29 -54.86 16 22 Si 0.99 45.08 29.55 68.60 2.03 47.11 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 26 C -0.05 -2.09 9.35 22.70 0.21 -1.88 16 27 H 0.11 0.23 7.41 -2.39 -0.02 0.22 16 28 H 0.09 0.73 8.10 -2.39 -0.02 0.71 16 29 H 0.09 1.09 4.74 -2.39 -0.01 1.08 16 30 H 0.18 0.81 8.07 -2.39 -0.02 0.79 16 31 H 0.12 1.90 7.37 -2.38 -0.02 1.88 16 32 H 0.45 1.43 9.06 -74.06 -0.67 0.76 16 33 H 0.19 2.02 4.75 -2.91 -0.01 2.00 16 34 H 0.18 2.32 8.06 -2.91 -0.02 2.29 16 35 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 36 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 37 H 0.10 4.66 7.95 -2.91 -0.02 4.64 16 Total: -1.00 -89.98 345.96 -0.99 -90.97 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 0.49 Total: 4.38 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: 6.22 Total: -11.87 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -7.72 Total: -87.74 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.80 Total: -36.17 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: -5.47 SS G_CDS: -1.21 Total: -6.68 kcal Total: -89.98 -0.99 -90.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364511901.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.298 kcal (2) G-P(sol) polarization free energy of solvation -89.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds