Wall clock time and date at job start Tue Mar 31 2020 18:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86804 * 119.99906 * 2 1 4 4 H 1.48501 * 109.46948 * 270.00174 * 3 2 1 5 5 H 1.48497 * 109.47258 * 29.99711 * 3 2 1 6 6 H 1.48492 * 109.47303 * 149.99996 * 3 2 1 7 7 C 1.39938 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00177 * 159.78826 * 7 2 1 9 9 C 1.41402 * 119.99933 * 339.79489 * 7 2 1 10 10 C 1.40731 * 120.24152 * 339.86633 * 9 7 2 11 11 C 1.37597 * 119.74146 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.25042 * 359.97438 * 11 10 9 13 13 C 1.38609 * 120.49858 * 0.27474 * 12 11 10 14 14 S 1.76200 * 119.87290 * 179.70297 * 13 12 11 15 15 O 1.42099 * 106.40220 * 203.54261 * 14 13 12 16 16 O 1.42106 * 106.40498 * 336.46204 * 14 13 12 17 17 N 1.65596 * 107.22009 * 90.00293 * 14 13 12 18 18 C 1.46500 * 120.00033 * 63.14146 * 17 14 13 19 19 C 1.50703 * 115.54841 * 279.43579 * 18 17 14 20 20 N 1.34489 * 126.28702 * 316.99469 * 19 18 17 21 21 C 1.31140 * 105.61422 * 179.97438 * 20 19 18 22 22 O 1.33638 * 106.89668 * 0.02562 * 21 20 19 23 23 N 1.21309 * 109.81300 * 359.73583 * 22 21 20 24 24 C 1.53005 * 117.50316 * 133.72782 * 18 17 14 25 25 C 1.53002 * 59.99951 * 252.51048 * 24 18 17 26 26 C 1.37640 * 120.25022 * 359.45023 * 13 12 11 27 27 H 0.97004 * 120.00218 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.13154 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.87564 * 179.97438 * 11 10 9 30 30 H 1.08005 * 119.74676 * 180.02562 * 12 11 10 31 31 H 0.97004 * 120.00675 * 243.14080 * 17 14 13 32 32 H 1.07995 * 126.54931 * 180.02562 * 21 20 19 33 33 H 1.09006 * 117.49267 * 0.02562 * 24 18 17 34 34 H 1.08994 * 117.50071 * 145.02076 * 24 18 17 35 35 H 1.08999 * 117.49734 * 252.50829 * 25 24 18 36 36 H 1.08997 * 117.50117 * 107.48343 * 25 24 18 37 37 H 1.07996 * 120.12630 * 180.25422 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5397 1.4403 0.7000 7 6 2.0079 -1.2119 0.0005 8 1 3.0381 -1.2408 -0.3226 9 6 1.3662 -2.3986 0.4240 10 6 0.2116 -2.3326 1.2259 11 6 -0.4050 -3.4939 1.6317 12 6 0.1070 -4.7256 1.2531 13 6 1.2465 -4.8026 0.4678 14 16 1.8873 -6.3767 0.0028 15 8 3.2657 -6.1807 -0.2816 16 8 1.4180 -7.3034 0.9725 17 7 1.1692 -6.7947 -1.4295 18 6 1.3929 -5.9799 -2.6263 19 6 0.5591 -4.7286 -2.7260 20 7 -0.7510 -4.6204 -2.4420 21 6 -1.0583 -3.3654 -2.6663 22 8 0.0601 -2.7586 -3.0748 23 7 0.9751 -3.5548 -3.0974 24 6 1.7266 -6.7125 -3.9275 25 6 2.8143 -5.9285 -3.1904 26 6 1.8765 -3.6539 0.0456 27 1 -0.4851 0.8401 0.0004 28 1 -0.1896 -1.3743 1.5208 29 1 -1.2910 -3.4458 2.2474 30 1 -0.3837 -5.6320 1.5759 31 1 0.6003 -7.5790 -1.4763 32 1 -2.0297 -2.9094 -2.5442 33 1 1.7792 -7.8007 -3.8931 34 1 1.3429 -6.2895 -4.8559 35 1 3.1461 -4.9897 -3.6338 36 1 3.5828 -6.5009 -2.6709 37 1 2.7619 -3.7162 -0.5696 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364980979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:25 Heat of formation + Delta-G solvation = 29.365323 kcal Electronic energy + Delta-G solvation = -27908.873059 eV Core-core repulsion = 23974.779382 eV Total energy + Delta-G solvation = -3934.093676 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.38776 -39.62869 -39.40498 -38.24169 -36.98858 -36.16915 -35.67285 -33.49641 -32.76620 -31.89464 -31.55641 -27.32805 -26.00041 -24.92802 -23.67395 -23.48296 -22.77904 -22.13321 -20.62756 -19.63696 -19.15416 -18.77711 -18.49750 -17.72917 -17.34228 -16.99007 -16.60511 -16.39948 -16.33468 -15.76935 -15.26099 -15.06799 -14.49314 -14.30848 -13.70151 -13.63098 -13.39832 -13.29549 -13.20978 -13.10933 -13.05842 -12.84923 -12.77828 -12.61241 -12.43657 -12.34974 -12.20913 -11.95663 -11.62568 -11.58066 -11.37697 -11.08539 -10.86515 -10.65675 -9.82873 -9.55803 -8.72703 -6.39487 -0.59383 0.37986 0.47434 0.86766 1.31942 1.37661 1.43489 1.50960 1.89750 2.17958 2.29992 2.48749 2.58383 2.68331 2.74650 3.30047 3.34288 3.54801 3.67493 3.83220 4.04408 4.30733 4.42016 4.44798 4.65485 4.74504 4.84256 4.92724 4.94751 4.98010 5.07904 5.12470 5.16772 5.22389 5.41347 5.58941 5.91184 5.95592 5.97553 6.12678 6.54664 6.81456 6.87896 7.35705 8.23248 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.005784 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.755875 B = 4839.628864 C = 5550.403902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.051 3.949 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.268 1.268 7 C -0.485 4.485 8 H 0.066 0.934 9 C 0.074 3.926 10 C -0.143 4.143 11 C -0.118 4.118 12 C -0.149 4.149 13 C -0.633 4.633 14 S 2.708 3.292 15 O -0.982 6.982 16 O -0.987 6.987 17 N -1.056 6.056 18 C 0.147 3.853 19 C 0.181 3.819 20 N -0.490 5.490 21 C 0.172 3.828 22 O 0.077 5.923 23 N -0.381 5.381 24 C -0.103 4.103 25 C -0.158 4.158 26 C -0.136 4.136 27 H 0.293 0.707 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.433 0.567 32 H 0.293 0.707 33 H 0.145 0.855 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.122 0.878 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.625 -6.246 -8.488 11.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.167 4.167 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.192 1.192 7 C -0.513 4.513 8 H 0.084 0.916 9 C 0.070 3.930 10 C -0.163 4.163 11 C -0.137 4.137 12 C -0.170 4.170 13 C -0.723 4.723 14 S 2.802 3.198 15 O -0.972 6.972 16 O -0.977 6.977 17 N -0.815 5.815 18 C 0.054 3.946 19 C -0.094 4.094 20 N -0.222 5.222 21 C -0.068 4.068 22 O 0.018 5.982 23 N -0.088 5.088 24 C -0.143 4.143 25 C -0.197 4.197 26 C -0.157 4.157 27 H 0.105 0.895 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.137 0.863 31 H 0.272 0.728 32 H 0.308 0.692 33 H 0.163 0.837 34 H 0.138 0.862 35 H 0.125 0.875 36 H 0.141 0.859 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.369 -6.743 -8.119 10.816 hybrid contribution -0.728 1.522 0.409 1.736 sum -3.097 -5.221 -7.710 9.813 Atomic orbital electron populations 1.69753 1.08361 1.30923 1.33411 1.26493 0.95501 1.03637 0.91096 0.85390 0.79262 0.76730 0.79586 1.18676 1.18423 1.19241 1.19692 0.98962 0.92733 1.39952 0.91598 1.17859 0.92379 0.92290 0.90430 1.21674 0.98113 0.97785 0.98724 1.21047 0.99753 0.92571 1.00374 1.20276 0.96346 0.97798 1.02614 1.30017 1.09360 1.19093 1.13813 1.01143 0.73236 0.73291 0.72081 1.93500 1.32314 1.86765 1.84585 1.93506 1.82331 1.62577 1.59308 1.54488 1.67177 1.37815 1.21998 1.17604 0.98209 0.89119 0.89700 1.24987 0.89495 0.94196 1.00686 1.71703 1.11719 1.18251 1.20514 1.31130 0.95774 0.87103 0.92800 1.85288 1.15364 1.35982 1.61576 1.74535 1.11663 1.00755 1.21835 1.23580 0.97655 1.01467 0.91589 1.23682 0.90229 1.04056 1.01742 1.20542 1.00427 0.92010 1.02705 0.89545 0.86211 0.86025 0.86270 0.72836 0.69175 0.83732 0.86237 0.87516 0.85936 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.95 10.82 21.82 0.24 -36.72 16 2 C 0.05 2.37 5.13 85.26 0.44 2.81 16 3 Si 0.97 36.46 29.60 68.60 2.03 38.49 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 5 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 6 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 7 C -0.48 -25.25 9.06 23.46 0.21 -25.04 16 8 H 0.07 3.48 7.92 -2.91 -0.02 3.46 16 9 C 0.07 3.83 5.62 -21.29 -0.12 3.71 16 10 C -0.14 -7.05 8.74 22.73 0.20 -6.85 16 11 C -0.12 -5.24 10.02 22.22 0.22 -5.01 16 12 C -0.15 -6.54 9.53 22.46 0.21 -6.33 16 13 C -0.63 -28.33 5.28 22.22 0.12 -28.22 16 14 S 2.71 104.35 5.72 -56.49 -0.32 104.02 16 15 O -0.98 -41.33 15.45 -128.00 -1.98 -43.30 16 16 O -0.99 -40.39 17.27 -128.00 -2.21 -42.60 16 17 N -1.06 -31.41 5.89 -155.17 -0.91 -32.33 16 18 C 0.15 4.35 2.62 2.86 0.01 4.36 16 19 C 0.18 6.25 6.22 138.46 0.86 7.11 16 20 N -0.49 -16.31 11.55 -315.36 -3.64 -19.95 16 21 C 0.17 5.16 13.40 130.51 1.75 6.91 16 22 O 0.08 2.78 11.31 74.87 0.85 3.63 16 23 N -0.38 -14.38 11.77 -60.37 -0.71 -15.09 16 24 C -0.10 -2.05 10.16 30.60 0.31 -1.74 16 25 C -0.16 -4.30 9.27 30.60 0.28 -4.01 16 26 C -0.14 -6.70 8.53 22.73 0.19 -6.50 16 27 H 0.29 12.11 8.30 -92.71 -0.77 11.34 16 28 H 0.12 6.00 5.93 -2.91 -0.02 5.98 16 29 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 30 H 0.12 4.76 7.60 -2.91 -0.02 4.74 16 31 H 0.43 10.02 8.96 -96.74 -0.87 9.15 16 32 H 0.29 5.58 8.06 -2.91 -0.02 5.56 16 33 H 0.14 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.11 3.06 7.92 -2.39 -0.02 3.04 16 36 H 0.12 3.36 7.23 -2.39 -0.02 3.34 16 37 H 0.09 4.70 7.61 -2.91 -0.02 4.68 16 Total: -1.00 -68.00 338.15 -1.70 -69.70 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.28 Total: 32.96 kcal Atomic # 6 Polarization: -63.50 SS G_CDS: 4.69 Total: -58.81 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -5.03 Total: -104.08 kcal Atomic # 8 Polarization: -78.94 SS G_CDS: -3.34 Total: -82.28 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Atomic # 16 Polarization: 104.35 SS G_CDS: -0.32 Total: 104.02 kcal Total: -68.00 -1.70 -69.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364980979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.066 kcal (2) G-P(sol) polarization free energy of solvation -68.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds