Wall clock time and date at job start Tue Mar 31 2020 19:11:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13603 * 1
3 3 C 1.43194 * 179.97438 * 2 1
4 4 C 1.39785 * 120.07898 * 264.68520 * 3 2 1
5 5 C 1.37692 * 119.94513 * 180.02562 * 4 3 2
6 6 C 1.39081 * 120.09580 * 359.97438 * 5 4 3
7 7 N 1.39588 * 119.92702 * 179.97438 * 6 5 4
8 8 C 1.34776 * 120.00153 * 335.13043 * 7 6 5
9 9 O 1.21585 * 119.99948 * 354.37809 * 8 7 6
10 10 N 1.34775 * 120.00606 * 174.37691 * 8 7 6
11 11 C 1.47430 * 125.64609 * 0.02853 * 10 8 7
12 12 C 1.54908 * 104.83272 * 155.83490 * 11 10 8
13 13 C 1.55158 * 101.58476 * 37.00715 * 12 11 10
14 14 O 1.42895 * 110.71960 * 83.03568 * 13 12 11
15 15 C 1.50697 * 110.72361 * 206.13482 * 13 12 11
16 16 H 1.08000 * 119.99717 * 357.56176 * 15 13 12
17 17 C 1.37873 * 120.00055 * 177.28026 * 15 13 12
18 18 N 1.31513 * 120.00132 * 0.27939 * 17 15 13
19 19 Si 1.86806 * 119.99893 * 180.27443 * 17 15 13
20 20 H 1.48506 * 109.46780 * 90.00471 * 19 17 15
21 21 H 1.48501 * 109.46844 * 210.00115 * 19 17 15
22 22 H 1.48499 * 109.47112 * 330.00395 * 19 17 15
23 23 C 1.47318 * 125.61817 * 180.16190 * 10 8 7
24 24 C 1.39182 * 120.14959 * 0.25947 * 6 5 4
25 25 Cl 1.73603 * 119.97217 * 179.74482 * 24 6 5
26 26 C 1.37810 * 120.06272 * 359.48902 * 24 6 5
27 27 H 1.08001 * 120.02924 * 0.04121 * 4 3 2
28 28 H 1.08000 * 119.95429 * 179.97438 * 5 4 3
29 29 H 0.97001 * 120.00585 * 155.13163 * 7 6 5
30 30 H 1.09002 * 110.36498 * 36.99342 * 11 10 8
31 31 H 1.08998 * 110.36323 * 274.67561 * 11 10 8
32 32 H 1.09001 * 110.99959 * 278.93523 * 12 11 10
33 33 H 1.08996 * 111.00318 * 155.08166 * 12 11 10
34 34 H 0.96704 * 114.00083 * 182.44370 * 14 13 12
35 35 H 0.96995 * 120.00317 * 179.97438 * 18 17 15
36 36 H 1.09000 * 110.06007 * 61.75766 * 23 10 8
37 37 H 1.08994 * 109.85280 * 300.49581 * 23 10 8
38 38 H 1.07993 * 120.05166 * 180.25731 * 26 24 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2685 0.1130 1.2044
5 6 4.6454 0.1138 1.2012
6 6 5.3401 0.0025 0.0014
7 7 6.7360 0.0043 0.0021
8 6 7.4086 0.5925 1.0112
9 8 6.8038 1.2094 1.8667
10 7 8.7516 0.4968 1.0719
11 6 9.6067 -0.2165 0.1058
12 6 10.9953 0.4587 0.2312
13 6 11.0676 0.7418 1.7550
14 8 11.5042 -0.4191 2.4647
15 6 11.9763 1.9103 2.0378
16 1 12.4994 2.3960 1.2273
17 6 12.1353 2.3629 3.3304
18 7 11.4983 1.7714 4.3173
19 14 13.2557 3.8162 3.6799
20 1 12.4726 5.0755 3.5993
21 1 13.8341 3.6792 5.0407
22 1 14.3508 3.8493 2.6775
23 6 9.6072 1.0857 2.1166
24 6 4.6466 -0.1046 -1.2006
25 17 5.5183 -0.2367 -2.6960
26 6 3.2685 -0.1114 -1.2042
27 1 2.7302 0.1988 2.1368
28 1 5.1868 0.2011 2.1316
29 1 7.2220 -0.4177 -0.7235
30 1 9.2171 -0.0980 -0.9053
31 1 9.6736 -1.2728 0.3661
32 1 11.0318 1.3860 -0.3406
33 1 11.7894 -0.2208 -0.0781
34 1 11.5306 -0.3065 3.4248
35 1 11.6104 2.0896 5.2266
36 1 9.3562 0.6612 3.0887
37 1 9.4753 2.1674 2.1369
38 1 2.7306 -0.1987 -2.1366
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001365769840.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:11:58
Heat of formation + Delta-G solvation = -17.517111 kcal
Electronic energy + Delta-G solvation = -25681.306791 eV
Core-core repulsion = 21743.136433 eV
Total energy + Delta-G solvation = -3938.170357 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 335.082 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-40.87525 -39.31209 -37.71662 -37.04068 -36.38736 -34.80440 -34.46393 -32.29294
-31.25509 -30.79525 -29.62527 -27.94557 -25.48597 -24.00287 -23.28978 -22.67725
-20.01099 -19.72322 -19.32103 -18.39794 -17.34999 -17.22884 -16.08753 -15.57933
-15.35145 -15.13019 -14.88796 -14.61261 -14.34160 -14.11497 -13.95732 -13.65137
-13.25487 -13.10018 -13.06177 -12.98183 -12.64732 -12.44158 -11.93580 -11.82236
-11.70303 -11.57116 -11.34359 -11.14069 -10.94116 -10.80127 -10.65786 -10.57278
-10.28124 -9.87674 -9.45415 -9.19728 -8.76620 -8.46190 -8.43073 -7.99779
-6.38004 -4.46619 0.41267 0.86443 1.70229 2.46413 2.49983 2.63001
3.16163 3.24230 3.26432 3.27917 3.60061 3.64581 3.96052 4.20519
4.38875 4.65105 4.85875 4.90663 5.03642 5.17541 5.34752 5.49198
5.61705 5.62473 5.77214 5.84589 5.89263 5.95157 6.14428 6.34842
6.54307 6.58169 6.70432 6.72475 6.95852 7.15289 7.24560 7.30180
7.64335 7.90283 8.07449 8.55879 8.62477 9.20641 9.30182 10.69879
Molecular weight = 335.08amu
Principal moments of inertia in cm(-1)
A = 0.019729 B = 0.002768 C = 0.002561
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1418.865525 B =10114.448618 C =10931.165555
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.424 5.424
2 C 0.264 3.736
3 C -0.057 4.057
4 C -0.037 4.037
5 C -0.127 4.127
6 C 0.231 3.769
7 N -0.681 5.681
8 C 0.713 3.287
9 O -0.571 6.571
10 N -0.618 5.618
11 C 0.097 3.903
12 C -0.116 4.116
13 C 0.249 3.751
14 O -0.585 6.585
15 C -0.538 4.538
16 H 0.068 0.932
17 C 0.071 3.929
18 N -0.894 5.894
19 Si 0.904 3.096
20 H -0.278 1.278
21 H -0.284 1.284
22 H -0.272 1.272
23 C 0.119 3.881
24 C -0.087 4.087
25 Cl -0.057 7.057
26 C -0.034 4.034
27 H 0.142 0.858
28 H 0.171 0.829
29 H 0.410 0.590
30 H 0.058 0.942
31 H 0.069 0.931
32 H 0.078 0.922
33 H 0.079 0.921
34 H 0.385 0.615
35 H 0.272 0.728
36 H 0.068 0.932
37 H 0.069 0.931
38 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.116 -5.670 -10.222 15.458
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.099 5.099
2 C -0.051 4.051
3 C -0.062 4.062
4 C -0.058 4.058
5 C -0.148 4.148
6 C 0.129 3.871
7 N -0.327 5.327
8 C 0.415 3.585
9 O -0.448 6.448
10 N -0.354 5.354
11 C -0.026 4.026
12 C -0.154 4.154
13 C 0.208 3.792
14 O -0.394 6.394
15 C -0.577 4.577
16 H 0.086 0.914
17 C -0.132 4.132
18 N -0.533 5.533
19 Si 0.731 3.269
20 H -0.204 1.204
21 H -0.209 1.209
22 H -0.197 1.197
23 C -0.003 4.003
24 C -0.118 4.118
25 Cl -0.028 7.028
26 C -0.056 4.056
27 H 0.160 0.840
28 H 0.188 0.812
29 H 0.248 0.752
30 H 0.076 0.924
31 H 0.087 0.913
32 H 0.097 0.903
33 H 0.098 0.902
34 H 0.236 0.764
35 H 0.082 0.918
36 H 0.087 0.913
37 H 0.088 0.912
38 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges -12.111 -5.454 -10.078 16.673
hybrid contribution 1.286 0.837 0.240 1.553
sum -10.825 -4.617 -9.837 15.339
Atomic orbital electron populations
1.81263 1.11972 1.09520 1.07187 1.25508 0.92371 0.93425 0.93824
1.15749 0.84456 1.11624 0.94359 1.21195 0.93607 0.94098 0.96891
1.21527 0.93430 1.01322 0.98514 1.17555 0.82775 0.94498 0.92224
1.42906 1.04008 1.58984 1.26779 1.15463 0.81339 0.80014 0.81635
1.90874 1.66623 1.46674 1.40674 1.48165 1.02872 1.54811 1.29524
1.22385 0.92325 0.96812 0.91106 1.22740 0.93996 1.00280 0.98337
1.19493 0.88132 0.84721 0.86845 1.86096 1.89781 1.38795 1.24749
1.21488 1.27757 1.14780 0.93644 0.91428 1.25070 0.95146 0.96941
0.96066 1.69624 1.41890 1.41363 1.00446 0.86387 0.80617 0.82069
0.77781 1.20370 1.20938 1.19667 1.23133 0.90494 0.97989 0.88653
1.20326 0.92196 1.13166 0.86078 1.98379 1.76192 1.96733 1.31542
1.20716 0.91094 0.95997 0.97813 0.84032 0.81210 0.75194 0.92375
0.91303 0.90315 0.90241 0.76369 0.91846 0.91318 0.91232 0.83762
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.42 -5.31 18.54 41.84 0.78 -4.53 16
2 C 0.26 2.73 15.33 -22.48 -0.34 2.39 16
3 C -0.06 -0.52 5.74 -106.82 -0.61 -1.13 16
4 C -0.04 -0.34 9.75 -39.20 -0.38 -0.72 16
5 C -0.13 -1.50 8.69 -39.47 -0.34 -1.84 16
6 C 0.23 2.74 6.43 -83.66 -0.54 2.20 16
7 N -0.68 -8.92 5.13 -14.18 -0.07 -8.99 16
8 C 0.71 12.30 8.29 -86.92 -0.72 11.58 16
9 O -0.57 -11.42 13.81 5.29 0.07 -11.34 16
10 N -0.62 -11.20 3.33 -175.99 -0.59 -11.78 16
11 C 0.10 1.47 6.62 -2.53 -0.02 1.45 16
12 C -0.12 -2.06 6.23 -24.58 -0.15 -2.21 16
13 C 0.25 5.52 0.85 -89.93 -0.08 5.45 16
14 O -0.58 -13.64 13.08 -35.23 -0.46 -14.10 16
15 C -0.54 -13.20 8.11 -34.44 -0.28 -13.48 16
16 H 0.07 1.64 7.77 -52.49 -0.41 1.23 16
17 C 0.07 1.76 5.27 -17.82 -0.09 1.67 16
18 N -0.89 -22.51 10.96 55.43 0.61 -21.90 16
19 Si 0.90 19.57 29.54 -169.99 -5.02 14.55 16
20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16
21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16
22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16
23 C 0.12 2.61 5.39 -2.90 -0.02 2.59 16
24 C -0.09 -0.86 6.33 -39.39 -0.25 -1.11 16
25 Cl -0.06 -0.52 27.76 -51.86 -1.44 -1.96 16
26 C -0.03 -0.29 9.52 -39.17 -0.37 -0.67 16
27 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16
28 H 0.17 2.37 5.77 -52.49 -0.30 2.06 16
29 H 0.41 4.56 6.19 -40.82 -0.25 4.30 16
30 H 0.06 0.69 7.22 -51.93 -0.37 0.31 16
31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16
32 H 0.08 1.35 8.03 -51.93 -0.42 0.94 16
33 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16
34 H 0.39 9.30 7.24 45.56 0.33 9.63 16
35 H 0.27 6.59 8.31 -40.82 -0.34 6.26 16
36 H 0.07 1.65 8.00 -51.93 -0.42 1.24 16
37 H 0.07 1.68 7.81 -51.93 -0.41 1.28 16
38 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16
LS Contribution 344.75 15.07 5.20 5.20
Total: -1.00 -27.44 344.75 -8.20 -35.64
By element:
Atomic # 1 Polarization: 16.14 SS G_CDS: -3.07 Total: 13.06 kcal
Atomic # 6 Polarization: 10.37 SS G_CDS: -4.20 Total: 6.17 kcal
Atomic # 7 Polarization: -47.93 SS G_CDS: 0.72 Total: -47.21 kcal
Atomic # 8 Polarization: -25.06 SS G_CDS: -0.39 Total: -25.45 kcal
Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal
Atomic # 17 Polarization: -0.52 SS G_CDS: -1.44 Total: -1.96 kcal
Total LS contribution 5.20 Total: 5.20 kcal
Total: -27.44 -8.20 -35.64 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001365769840.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.123 kcal
(2) G-P(sol) polarization free energy of solvation -27.440 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.317 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.640 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.517 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds