Wall clock time and date at job start Tue Mar 31 2020 19:11:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13603 * 1
3 3 C 1.43194 * 179.97438 * 2 1
4 4 C 1.39785 * 120.07898 * 264.68520 * 3 2 1
5 5 C 1.37692 * 119.94513 * 180.02562 * 4 3 2
6 6 C 1.39081 * 120.09580 * 359.97438 * 5 4 3
7 7 N 1.39588 * 119.92702 * 179.97438 * 6 5 4
8 8 C 1.34776 * 120.00153 * 335.13043 * 7 6 5
9 9 O 1.21585 * 119.99948 * 354.37809 * 8 7 6
10 10 N 1.34775 * 120.00606 * 174.37691 * 8 7 6
11 11 C 1.47430 * 125.64609 * 0.02853 * 10 8 7
12 12 C 1.54908 * 104.83272 * 155.83490 * 11 10 8
13 13 C 1.55158 * 101.58476 * 37.00715 * 12 11 10
14 14 O 1.42895 * 110.71960 * 83.03568 * 13 12 11
15 15 C 1.50697 * 110.72361 * 206.13482 * 13 12 11
16 16 H 1.08000 * 119.99717 * 357.56176 * 15 13 12
17 17 C 1.37873 * 120.00055 * 177.28026 * 15 13 12
18 18 N 1.31513 * 120.00132 * 0.27939 * 17 15 13
19 19 Si 1.86806 * 119.99893 * 180.27443 * 17 15 13
20 20 H 1.48506 * 109.46780 * 90.00471 * 19 17 15
21 21 H 1.48501 * 109.46844 * 210.00115 * 19 17 15
22 22 H 1.48499 * 109.47112 * 330.00395 * 19 17 15
23 23 C 1.47318 * 125.61817 * 180.16190 * 10 8 7
24 24 C 1.39182 * 120.14959 * 0.25947 * 6 5 4
25 25 Cl 1.73603 * 119.97217 * 179.74482 * 24 6 5
26 26 C 1.37810 * 120.06272 * 359.48902 * 24 6 5
27 27 H 1.08001 * 120.02924 * 0.04121 * 4 3 2
28 28 H 1.08000 * 119.95429 * 179.97438 * 5 4 3
29 29 H 0.97001 * 120.00585 * 155.13163 * 7 6 5
30 30 H 1.09002 * 110.36498 * 36.99342 * 11 10 8
31 31 H 1.08998 * 110.36323 * 274.67561 * 11 10 8
32 32 H 1.09001 * 110.99959 * 278.93523 * 12 11 10
33 33 H 1.08996 * 111.00318 * 155.08166 * 12 11 10
34 34 H 0.96704 * 114.00083 * 182.44370 * 14 13 12
35 35 H 0.96995 * 120.00317 * 179.97438 * 18 17 15
36 36 H 1.09000 * 110.06007 * 61.75766 * 23 10 8
37 37 H 1.08994 * 109.85280 * 300.49581 * 23 10 8
38 38 H 1.07993 * 120.05166 * 180.25731 * 26 24 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2685 0.1130 1.2044
5 6 4.6454 0.1138 1.2012
6 6 5.3401 0.0025 0.0014
7 7 6.7360 0.0043 0.0021
8 6 7.4086 0.5925 1.0112
9 8 6.8038 1.2094 1.8667
10 7 8.7516 0.4968 1.0719
11 6 9.6067 -0.2165 0.1058
12 6 10.9953 0.4587 0.2312
13 6 11.0676 0.7418 1.7550
14 8 11.5042 -0.4191 2.4647
15 6 11.9763 1.9103 2.0378
16 1 12.4994 2.3960 1.2273
17 6 12.1353 2.3629 3.3304
18 7 11.4983 1.7714 4.3173
19 14 13.2557 3.8162 3.6799
20 1 12.4726 5.0755 3.5993
21 1 13.8341 3.6792 5.0407
22 1 14.3508 3.8493 2.6775
23 6 9.6072 1.0857 2.1166
24 6 4.6466 -0.1046 -1.2006
25 17 5.5183 -0.2367 -2.6960
26 6 3.2685 -0.1114 -1.2042
27 1 2.7302 0.1988 2.1368
28 1 5.1868 0.2011 2.1316
29 1 7.2220 -0.4177 -0.7235
30 1 9.2171 -0.0980 -0.9053
31 1 9.6736 -1.2728 0.3661
32 1 11.0318 1.3860 -0.3406
33 1 11.7894 -0.2208 -0.0781
34 1 11.5306 -0.3065 3.4248
35 1 11.6104 2.0896 5.2266
36 1 9.3562 0.6612 3.0887
37 1 9.4753 2.1674 2.1369
38 1 2.7306 -0.1987 -2.1366
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001365769840.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:11:57
Heat of formation + Delta-G solvation = -34.528999 kcal
Electronic energy + Delta-G solvation = -25682.044482 eV
Core-core repulsion = 21743.136433 eV
Total energy + Delta-G solvation = -3938.908048 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 335.082 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-42.02733 -40.43608 -39.14810 -37.89207 -37.28071 -36.18328 -35.84226 -34.18138
-32.21066 -31.95229 -30.80511 -29.54999 -27.12889 -25.20393 -24.15193 -23.95152
-21.48138 -21.14498 -20.16903 -19.61117 -19.01325 -18.53492 -17.28873 -17.06634
-16.59303 -16.25756 -16.22402 -16.01182 -15.37606 -15.09897 -14.94969 -14.79487
-14.76348 -14.61468 -14.23728 -14.00858 -13.87067 -13.55026 -13.47475 -13.32818
-12.85689 -12.74459 -12.52882 -12.47885 -12.30894 -12.27617 -12.11264 -12.07046
-11.71493 -11.22664 -11.15348 -10.63455 -10.28416 -9.99344 -9.73436 -9.15272
-8.25512 -6.40213 -0.44190 0.08287 0.91509 1.32530 1.43332 1.46227
1.54501 1.61177 1.64491 2.08003 2.38959 2.73376 2.74002 2.82038
3.01800 3.59525 3.78777 3.89292 3.95693 4.09607 4.16587 4.22385
4.36053 4.55119 4.59342 4.71318 4.84393 4.92161 5.04072 5.08314
5.13214 5.19303 5.23828 5.37594 5.49168 5.63294 5.76677 5.86800
6.08396 6.41412 6.65226 6.78876 7.27893 7.30845 7.38896 8.80489
Molecular weight = 335.08amu
Principal moments of inertia in cm(-1)
A = 0.019729 B = 0.002768 C = 0.002561
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1418.865525 B =10114.448618 C =10931.165555
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.458 5.458
2 C 0.287 3.713
3 C -0.048 4.048
4 C -0.025 4.025
5 C -0.141 4.141
6 C 0.211 3.789
7 N -0.666 5.666
8 C 0.714 3.286
9 O -0.605 6.605
10 N -0.625 5.625
11 C 0.101 3.899
12 C -0.111 4.111
13 C 0.233 3.767
14 O -0.588 6.588
15 C -0.556 4.556
16 H 0.067 0.933
17 C 0.028 3.972
18 N -0.914 5.914
19 Si 0.959 3.041
20 H -0.280 1.280
21 H -0.283 1.283
22 H -0.266 1.266
23 C 0.139 3.861
24 C -0.081 4.081
25 Cl -0.045 7.045
26 C -0.020 4.020
27 H 0.160 0.840
28 H 0.145 0.855
29 H 0.421 0.579
30 H 0.102 0.898
31 H 0.078 0.922
32 H 0.085 0.915
33 H 0.091 0.909
34 H 0.377 0.623
35 H 0.270 0.730
36 H 0.037 0.963
37 H 0.037 0.963
38 H 0.172 0.828
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.851 -6.132 -12.592 17.718
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.134 5.134
2 C -0.027 4.027
3 C -0.053 4.053
4 C -0.046 4.046
5 C -0.162 4.162
6 C 0.111 3.889
7 N -0.313 5.313
8 C 0.416 3.584
9 O -0.485 6.485
10 N -0.360 5.360
11 C -0.020 4.020
12 C -0.149 4.149
13 C 0.192 3.808
14 O -0.396 6.396
15 C -0.594 4.594
16 H 0.085 0.915
17 C -0.173 4.173
18 N -0.553 5.553
19 Si 0.785 3.215
20 H -0.206 1.206
21 H -0.209 1.209
22 H -0.191 1.191
23 C 0.015 3.985
24 C -0.111 4.111
25 Cl -0.016 7.016
26 C -0.042 4.042
27 H 0.177 0.823
28 H 0.163 0.837
29 H 0.261 0.739
30 H 0.120 0.880
31 H 0.096 0.904
32 H 0.103 0.897
33 H 0.110 0.890
34 H 0.227 0.773
35 H 0.080 0.920
36 H 0.055 0.945
37 H 0.056 0.944
38 H 0.189 0.811
Dipole moment (debyes) X Y Z Total
from point charges -12.869 -5.949 -12.510 18.908
hybrid contribution 1.435 0.964 0.946 1.971
sum -11.434 -4.986 -11.564 17.009
Atomic orbital electron populations
1.81304 1.13029 1.10760 1.08341 1.25459 0.92186 0.92334 0.92722
1.15696 0.83775 1.11309 0.94513 1.21292 0.92654 0.92736 0.97961
1.21326 0.94321 1.02840 0.97748 1.17712 0.82046 0.96003 0.93137
1.42562 1.04536 1.58439 1.25768 1.15541 0.80956 0.79842 0.82039
1.90860 1.67272 1.48125 1.42230 1.48030 1.03374 1.55247 1.29362
1.22524 0.90447 0.96515 0.92561 1.22730 0.96088 1.01258 0.94802
1.19707 0.87481 0.83990 0.89588 1.86086 1.89918 1.39355 1.24234
1.21832 1.28148 1.15643 0.93760 0.91484 1.25753 0.96366 0.99040
0.96155 1.69724 1.42773 1.42324 1.00521 0.85532 0.79103 0.79309
0.77555 1.20560 1.20870 1.19081 1.22543 0.91533 0.95857 0.88542
1.20286 0.92542 1.12521 0.85797 1.98389 1.76061 1.96642 1.30529
1.20973 0.90549 0.94040 0.98602 0.82272 0.83738 0.73901 0.88012
0.90397 0.89685 0.89037 0.77279 0.92021 0.94499 0.94450 0.81101
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.46 -10.67 18.54 19.00 0.35 -10.32 16
2 C 0.29 5.27 15.33 88.33 1.35 6.63 16
3 C -0.05 -0.75 5.74 -21.29 -0.12 -0.87 16
4 C -0.03 -0.43 9.75 22.52 0.22 -0.21 16
5 C -0.14 -3.26 8.69 22.34 0.19 -3.07 16
6 C 0.21 4.70 6.43 38.34 0.25 4.95 16
7 N -0.67 -16.52 5.13 -317.05 -1.63 -18.14 16
8 C 0.71 24.61 8.29 179.06 1.48 26.09 16
9 O -0.60 -24.98 13.81 -3.99 -0.06 -25.03 16
10 N -0.62 -22.55 3.33 -828.99 -2.76 -25.31 16
11 C 0.10 2.86 6.62 86.85 0.57 3.44 16
12 C -0.11 -3.80 6.23 31.99 0.20 -3.60 16
13 C 0.23 10.46 0.85 -10.35 -0.01 10.45 16
14 O -0.59 -27.87 13.08 -148.98 -1.95 -29.81 16
15 C -0.56 -27.58 8.11 25.60 0.21 -27.38 16
16 H 0.07 3.25 7.77 -2.91 -0.02 3.23 16
17 C 0.03 1.40 5.27 84.65 0.45 1.85 16
18 N -0.91 -47.48 10.96 21.45 0.24 -47.25 16
19 Si 0.96 40.55 29.54 68.60 2.03 42.58 16
20 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16
21 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16
22 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16
23 C 0.14 6.32 5.39 86.67 0.47 6.78 16
24 C -0.08 -1.39 6.33 22.40 0.14 -1.24 16
25 Cl -0.05 -0.68 27.76 -2.72 -0.08 -0.76 16
26 C -0.02 -0.28 9.52 22.54 0.21 -0.06 16
27 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16
28 H 0.15 4.19 5.77 -2.91 -0.02 4.17 16
29 H 0.42 8.29 6.19 -92.71 -0.57 7.71 16
30 H 0.10 2.02 7.22 -2.39 -0.02 2.00 16
31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16
32 H 0.08 2.78 8.03 -2.39 -0.02 2.76 16
33 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16
34 H 0.38 18.90 7.24 -74.05 -0.54 18.36 16
35 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16
36 H 0.04 1.88 8.00 -2.39 -0.02 1.86 16
37 H 0.04 1.90 7.81 -2.39 -0.02 1.88 16
38 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16
Total: -1.00 -61.32 344.75 1.81 -59.51
By element:
Atomic # 1 Polarization: 30.74 SS G_CDS: 0.04 Total: 30.78 kcal
Atomic # 6 Polarization: 18.14 SS G_CDS: 5.62 Total: 23.76 kcal
Atomic # 7 Polarization: -97.22 SS G_CDS: -3.80 Total: -101.02 kcal
Atomic # 8 Polarization: -52.84 SS G_CDS: -2.00 Total: -54.85 kcal
Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal
Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal
Total: -61.32 1.81 -59.51 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001365769840.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.981 kcal
(2) G-P(sol) polarization free energy of solvation -61.316 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.335 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.510 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.529 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds