Wall clock time and date at job start Tue Mar 31 2020 19:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39786 * 120.07180 * 158.02627 * 3 2 1 5 5 C 1.37705 * 119.93688 * 179.97438 * 4 3 2 6 6 C 1.39075 * 120.09567 * 359.97438 * 5 4 3 7 7 N 1.39597 * 119.92614 * 180.02562 * 6 5 4 8 8 C 1.34779 * 119.99825 * 325.20682 * 7 6 5 9 9 O 1.21584 * 119.99705 * 4.53221 * 8 7 6 10 10 N 1.34776 * 120.00016 * 184.52593 * 8 7 6 11 11 C 1.47013 * 125.65122 * 359.70113 * 10 8 7 12 12 C 1.54336 * 107.26831 * 178.84616 * 11 10 8 13 13 C 1.55159 * 103.01864 * 338.13538 * 12 11 10 14 14 O 1.42895 * 111.00194 * 277.23484 * 13 12 11 15 15 C 1.50695 * 111.03327 * 153.39592 * 13 12 11 16 16 H 1.07998 * 120.00395 * 6.32968 * 15 13 12 17 17 C 1.37881 * 119.99848 * 186.33116 * 15 13 12 18 18 N 1.31514 * 119.99625 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00159 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46840 * 59.99962 * 19 17 15 21 21 H 1.48493 * 109.47208 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47081 * 299.99961 * 19 17 15 23 23 C 1.47432 * 125.64658 * 179.97438 * 10 8 7 24 24 C 1.39190 * 120.15481 * 359.97438 * 6 5 4 25 25 Cl 1.73598 * 119.96933 * 179.74379 * 24 6 5 26 26 C 1.37807 * 120.05766 * 0.02562 * 24 6 5 27 27 H 1.07996 * 120.03396 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.95061 * 180.02562 * 5 4 3 29 29 H 0.96999 * 120.00642 * 145.20565 * 7 6 5 30 30 H 1.09007 * 109.88111 * 298.39133 * 11 10 8 31 31 H 1.08997 * 109.88799 * 59.55135 * 11 10 8 32 32 H 1.09001 * 110.84518 * 219.66790 * 12 11 10 33 33 H 1.08997 * 110.51596 * 96.45159 * 12 11 10 34 34 H 0.96705 * 113.99932 * 173.64905 * 14 13 12 35 35 H 0.96998 * 119.99699 * 179.97438 * 18 17 15 36 36 H 1.09004 * 110.36599 * 322.93896 * 23 10 8 37 37 H 1.08999 * 110.35997 * 85.14520 * 23 10 8 38 38 H 1.07992 * 120.05017 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2679 1.1228 -0.4527 5 6 4.6450 1.1206 -0.4509 6 6 5.3400 0.0039 0.0009 7 7 6.7360 0.0057 0.0016 8 6 7.4095 0.6459 -0.9747 9 8 6.8039 1.2905 -1.8090 10 7 8.7542 0.5716 -1.0260 11 6 9.6084 -0.1638 -0.0822 12 6 11.0678 0.0116 -0.5527 13 6 10.9102 0.3733 -2.0533 14 8 10.7438 -0.8020 -2.8487 15 6 12.0802 1.1895 -2.5387 16 1 12.9279 1.3569 -1.8908 17 6 12.0686 1.7227 -3.8102 18 7 11.0362 1.5194 -4.5991 19 14 13.5193 2.7339 -4.4123 20 1 14.7488 1.9015 -4.3835 21 1 13.2621 3.1900 -5.8018 22 1 13.7000 3.9145 -3.5298 23 6 9.6126 1.2190 -2.0348 24 6 4.6470 -1.1151 0.4535 25 17 5.5195 -2.5089 1.0102 26 6 3.2690 -1.1198 0.4546 27 1 2.7293 1.9910 -0.8026 28 1 5.1860 1.9876 -0.8002 29 1 7.2213 -0.4536 0.7046 30 1 9.4889 0.2445 0.9215 31 1 9.3434 -1.2210 -0.0884 32 1 11.6270 -0.9168 -0.4365 33 1 11.5496 0.8239 -0.0087 34 1 10.5448 -0.6232 -3.7780 35 1 11.0279 1.8948 -5.4934 36 1 9.1315 1.1971 -3.0127 37 1 9.8316 2.2462 -1.7435 38 1 2.7314 -1.9883 0.8053 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365769841.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:02 Heat of formation + Delta-G solvation = -18.851152 kcal Electronic energy + Delta-G solvation = -25749.208626 eV Core-core repulsion = 21810.980420 eV Total energy + Delta-G solvation = -3938.228206 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.79433 -39.29565 -37.66528 -37.00271 -36.37278 -34.73560 -34.37915 -32.30358 -31.25911 -30.79889 -29.62890 -27.89161 -25.46320 -23.98482 -23.24856 -22.59675 -19.91437 -19.78444 -19.31461 -18.33285 -17.32631 -17.15836 -16.04203 -15.52894 -15.28701 -15.24341 -14.81532 -14.51396 -14.41063 -14.09555 -13.97162 -13.66997 -13.20581 -13.16798 -13.08913 -12.92385 -12.63843 -12.28956 -11.89267 -11.74376 -11.67909 -11.57494 -11.28854 -11.08639 -10.94506 -10.72757 -10.55886 -10.52488 -10.28107 -9.86485 -9.47226 -9.18318 -8.77202 -8.54331 -8.37629 -7.90628 -6.34647 -4.44736 0.39705 0.86928 1.73868 2.45907 2.52913 2.67593 3.18000 3.24506 3.25796 3.32630 3.59073 3.63680 4.03737 4.21995 4.42047 4.65939 4.88774 4.92811 5.04119 5.24659 5.36951 5.48832 5.60085 5.61750 5.80326 5.88022 5.89584 5.97339 6.16096 6.38182 6.56770 6.59512 6.70847 6.74002 7.01709 7.18129 7.23655 7.33501 7.67003 7.93856 8.14014 8.58586 8.69536 9.22066 9.30731 10.72350 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.020939 B = 0.002805 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.873224 B = 9979.921558 C =10886.047606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.263 3.737 3 C -0.051 4.051 4 C -0.041 4.041 5 C -0.115 4.115 6 C 0.226 3.774 7 N -0.685 5.685 8 C 0.715 3.285 9 O -0.574 6.574 10 N -0.617 5.617 11 C 0.098 3.902 12 C -0.115 4.115 13 C 0.249 3.751 14 O -0.582 6.582 15 C -0.539 4.539 16 H 0.067 0.933 17 C 0.072 3.928 18 N -0.892 5.892 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.111 3.889 24 C -0.080 4.080 25 Cl -0.054 7.054 26 C -0.039 4.039 27 H 0.142 0.858 28 H 0.164 0.836 29 H 0.410 0.590 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.382 0.618 35 H 0.271 0.729 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.474 -3.753 11.711 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.052 4.052 3 C -0.056 4.056 4 C -0.062 4.062 5 C -0.136 4.136 6 C 0.125 3.875 7 N -0.332 5.332 8 C 0.418 3.582 9 O -0.451 6.451 10 N -0.352 5.352 11 C -0.025 4.025 12 C -0.153 4.153 13 C 0.209 3.791 14 O -0.391 6.391 15 C -0.578 4.578 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.530 5.530 19 Si 0.731 3.269 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.010 4.010 24 C -0.110 4.110 25 Cl -0.026 7.026 26 C -0.061 4.061 27 H 0.160 0.840 28 H 0.182 0.818 29 H 0.247 0.753 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.232 0.768 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.463 -3.642 11.489 16.633 hybrid contribution 1.419 0.389 -0.495 1.552 sum -10.044 -3.253 10.994 15.242 Atomic orbital electron populations 1.81264 1.11960 1.07462 1.09104 1.25508 0.92373 0.93793 0.93516 1.15760 0.84457 0.96665 1.08677 1.21189 0.93636 0.96712 0.94701 1.21386 0.93322 0.98296 1.00597 1.17511 0.82913 0.91676 0.95384 1.42813 1.03837 1.57359 1.29210 1.15447 0.81286 0.80276 0.81204 1.90901 1.66675 1.46047 1.41471 1.48026 1.02598 1.52607 1.31981 1.22068 0.92870 0.95761 0.91800 1.22599 0.92846 1.02174 0.97691 1.19618 0.90418 0.82789 0.86312 1.86113 1.94020 1.33617 1.25317 1.21393 1.03639 1.32998 0.99729 0.91502 1.25080 0.96256 0.95350 0.96493 1.69696 1.29333 1.44967 1.08986 0.86452 0.82286 0.80250 0.77874 1.19985 1.21070 1.20008 1.23303 0.90874 0.96194 0.90649 1.20474 0.92207 0.88950 1.09343 1.98387 1.76146 1.40006 1.88023 1.20740 0.91164 0.97623 0.96560 0.84029 0.81835 0.75292 0.92698 0.92169 0.90528 0.90228 0.76819 0.91848 0.89264 0.91941 0.83742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.30 18.54 41.84 0.78 -4.52 16 2 C 0.26 2.73 15.33 -22.47 -0.34 2.39 16 3 C -0.05 -0.46 5.74 -106.82 -0.61 -1.08 16 4 C -0.04 -0.38 9.75 -39.20 -0.38 -0.76 16 5 C -0.12 -1.34 8.67 -39.47 -0.34 -1.68 16 6 C 0.23 2.71 6.30 -83.66 -0.53 2.19 16 7 N -0.69 -9.11 4.99 -14.18 -0.07 -9.18 16 8 C 0.72 12.59 8.33 -86.92 -0.72 11.86 16 9 O -0.57 -11.72 13.99 5.29 0.07 -11.65 16 10 N -0.62 -11.32 3.33 -176.24 -0.59 -11.91 16 11 C 0.10 1.51 6.16 -3.06 -0.02 1.49 16 12 C -0.12 -2.06 6.13 -24.89 -0.15 -2.21 16 13 C 0.25 5.58 0.87 -89.64 -0.08 5.51 16 14 O -0.58 -13.94 13.16 -35.23 -0.46 -14.40 16 15 C -0.54 -13.20 8.27 -34.44 -0.28 -13.49 16 16 H 0.07 1.60 7.79 -52.49 -0.41 1.19 16 17 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 18 N -0.89 -22.68 10.69 55.43 0.59 -22.09 16 19 Si 0.90 19.51 29.54 -169.99 -5.02 14.49 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 23 C 0.11 2.44 5.38 -2.54 -0.01 2.43 16 24 C -0.08 -0.81 6.33 -39.39 -0.25 -1.06 16 25 Cl -0.05 -0.53 27.93 -51.86 -1.45 -1.98 16 26 C -0.04 -0.34 9.52 -39.17 -0.37 -0.71 16 27 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 28 H 0.16 2.19 6.18 -52.48 -0.32 1.86 16 29 H 0.41 4.61 7.05 -40.82 -0.29 4.32 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.08 1.33 8.03 -51.93 -0.42 0.92 16 34 H 0.38 9.47 7.57 45.56 0.34 9.81 16 35 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 36 H 0.09 2.24 7.33 -51.93 -0.38 1.86 16 37 H 0.06 1.42 8.03 -51.93 -0.42 1.00 16 38 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -27.92 346.37 -8.27 -36.18 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -3.14 Total: 13.29 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -4.20 Total: 6.55 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.71 Total: -47.70 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.39 Total: -26.05 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.45 Total: -1.98 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.92 -8.27 -36.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365769841.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.330 kcal (2) G-P(sol) polarization free energy of solvation -27.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds