Wall clock time and date at job start Tue Mar 31 2020 19:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39786 * 120.07180 * 158.02627 * 3 2 1 5 5 C 1.37705 * 119.93688 * 179.97438 * 4 3 2 6 6 C 1.39075 * 120.09567 * 359.97438 * 5 4 3 7 7 N 1.39597 * 119.92614 * 180.02562 * 6 5 4 8 8 C 1.34779 * 119.99825 * 325.20682 * 7 6 5 9 9 O 1.21584 * 119.99705 * 4.53221 * 8 7 6 10 10 N 1.34776 * 120.00016 * 184.52593 * 8 7 6 11 11 C 1.47013 * 125.65122 * 359.70113 * 10 8 7 12 12 C 1.54336 * 107.26831 * 178.84616 * 11 10 8 13 13 C 1.55159 * 103.01864 * 338.13538 * 12 11 10 14 14 O 1.42895 * 111.00194 * 277.23484 * 13 12 11 15 15 C 1.50695 * 111.03327 * 153.39592 * 13 12 11 16 16 H 1.07998 * 120.00395 * 6.32968 * 15 13 12 17 17 C 1.37881 * 119.99848 * 186.33116 * 15 13 12 18 18 N 1.31514 * 119.99625 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00159 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46840 * 59.99962 * 19 17 15 21 21 H 1.48493 * 109.47208 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47081 * 299.99961 * 19 17 15 23 23 C 1.47432 * 125.64658 * 179.97438 * 10 8 7 24 24 C 1.39190 * 120.15481 * 359.97438 * 6 5 4 25 25 Cl 1.73598 * 119.96933 * 179.74379 * 24 6 5 26 26 C 1.37807 * 120.05766 * 0.02562 * 24 6 5 27 27 H 1.07996 * 120.03396 * 0.02562 * 4 3 2 28 28 H 1.08003 * 119.95061 * 180.02562 * 5 4 3 29 29 H 0.96999 * 120.00642 * 145.20565 * 7 6 5 30 30 H 1.09007 * 109.88111 * 298.39133 * 11 10 8 31 31 H 1.08997 * 109.88799 * 59.55135 * 11 10 8 32 32 H 1.09001 * 110.84518 * 219.66790 * 12 11 10 33 33 H 1.08997 * 110.51596 * 96.45159 * 12 11 10 34 34 H 0.96705 * 113.99932 * 173.64905 * 14 13 12 35 35 H 0.96998 * 119.99699 * 179.97438 * 18 17 15 36 36 H 1.09004 * 110.36599 * 322.93896 * 23 10 8 37 37 H 1.08999 * 110.35997 * 85.14520 * 23 10 8 38 38 H 1.07992 * 120.05017 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2679 1.1228 -0.4527 5 6 4.6450 1.1206 -0.4509 6 6 5.3400 0.0039 0.0009 7 7 6.7360 0.0057 0.0016 8 6 7.4095 0.6459 -0.9747 9 8 6.8039 1.2905 -1.8090 10 7 8.7542 0.5716 -1.0260 11 6 9.6084 -0.1638 -0.0822 12 6 11.0678 0.0116 -0.5527 13 6 10.9102 0.3733 -2.0533 14 8 10.7438 -0.8020 -2.8487 15 6 12.0802 1.1895 -2.5387 16 1 12.9279 1.3569 -1.8908 17 6 12.0686 1.7227 -3.8102 18 7 11.0362 1.5194 -4.5991 19 14 13.5193 2.7339 -4.4123 20 1 14.7488 1.9015 -4.3835 21 1 13.2621 3.1900 -5.8018 22 1 13.7000 3.9145 -3.5298 23 6 9.6126 1.2190 -2.0348 24 6 4.6470 -1.1151 0.4535 25 17 5.5195 -2.5089 1.0102 26 6 3.2690 -1.1198 0.4546 27 1 2.7293 1.9910 -0.8026 28 1 5.1860 1.9876 -0.8002 29 1 7.2213 -0.4536 0.7046 30 1 9.4889 0.2445 0.9215 31 1 9.3434 -1.2210 -0.0884 32 1 11.6270 -0.9168 -0.4365 33 1 11.5496 0.8239 -0.0087 34 1 10.5448 -0.6232 -3.7780 35 1 11.0279 1.8948 -5.4934 36 1 9.1315 1.1971 -3.0127 37 1 9.8316 2.2462 -1.7435 38 1 2.7314 -1.9883 0.8053 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365769841.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:01 Heat of formation + Delta-G solvation = -36.324362 kcal Electronic energy + Delta-G solvation = -25749.966321 eV Core-core repulsion = 21810.980420 eV Total energy + Delta-G solvation = -3938.985901 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.94918 -40.42914 -39.09902 -37.88169 -37.27792 -36.11492 -35.78928 -34.20147 -32.23031 -31.96405 -30.79697 -29.49399 -27.11158 -25.18497 -24.10666 -23.87622 -21.48402 -21.12252 -20.16481 -19.57672 -18.95968 -18.48124 -17.14934 -17.03465 -16.73431 -16.25104 -16.21543 -16.03245 -15.34703 -15.12732 -14.96046 -14.80663 -14.70026 -14.57395 -14.19137 -14.01675 -13.76067 -13.53371 -13.49509 -13.25655 -12.80700 -12.72843 -12.51795 -12.46351 -12.30277 -12.25291 -12.08821 -12.06415 -11.60580 -11.22984 -11.15682 -10.63317 -10.30175 -9.99154 -9.63058 -9.18144 -8.22057 -6.38534 -0.46016 0.08056 0.92778 1.37674 1.46423 1.48068 1.54587 1.61128 1.66800 2.10224 2.40427 2.72408 2.76534 2.85123 3.04483 3.62165 3.80452 3.91393 3.97650 4.11074 4.20845 4.22307 4.34793 4.56160 4.63640 4.78164 4.82238 4.96186 5.07847 5.09402 5.12100 5.23972 5.27139 5.39608 5.48823 5.63499 5.78805 5.92355 6.11764 6.40199 6.67605 6.84193 7.30447 7.34723 7.38333 8.82644 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.020939 B = 0.002805 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.873224 B = 9979.921558 C =10886.047606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.287 3.713 3 C -0.042 4.042 4 C -0.029 4.029 5 C -0.127 4.127 6 C 0.204 3.796 7 N -0.670 5.670 8 C 0.715 3.285 9 O -0.609 6.609 10 N -0.624 5.624 11 C 0.100 3.900 12 C -0.111 4.111 13 C 0.231 3.769 14 O -0.588 6.588 15 C -0.555 4.555 16 H 0.069 0.931 17 C 0.028 3.972 18 N -0.913 5.913 19 Si 0.960 3.040 20 H -0.272 1.272 21 H -0.288 1.288 22 H -0.269 1.269 23 C 0.128 3.872 24 C -0.076 4.076 25 Cl -0.047 7.047 26 C -0.026 4.026 27 H 0.162 0.838 28 H 0.143 0.857 29 H 0.421 0.579 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.373 0.627 35 H 0.269 0.731 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.891 -4.575 13.639 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.028 4.028 3 C -0.047 4.047 4 C -0.050 4.050 5 C -0.148 4.148 6 C 0.105 3.895 7 N -0.318 5.318 8 C 0.417 3.583 9 O -0.489 6.489 10 N -0.359 5.359 11 C -0.022 4.022 12 C -0.148 4.148 13 C 0.191 3.809 14 O -0.395 6.395 15 C -0.593 4.593 16 H 0.087 0.913 17 C -0.173 4.173 18 N -0.552 5.552 19 Si 0.786 3.214 20 H -0.197 1.197 21 H -0.214 1.214 22 H -0.194 1.194 23 C 0.005 3.995 24 C -0.106 4.106 25 Cl -0.018 7.018 26 C -0.047 4.047 27 H 0.179 0.821 28 H 0.161 0.839 29 H 0.260 0.740 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.221 0.779 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -11.896 -4.498 13.483 18.535 hybrid contribution 1.483 0.620 -1.068 1.930 sum -10.412 -3.878 12.415 16.661 Atomic orbital electron populations 1.81305 1.13005 1.08621 1.10327 1.25452 0.92180 0.92699 0.92427 1.15711 0.83792 0.96757 1.08439 1.21313 0.92710 0.97443 0.93535 1.21241 0.94195 0.97876 1.01519 1.17691 0.82192 0.92694 0.96874 1.42471 1.04390 1.56583 1.28335 1.15535 0.80962 0.80206 0.81572 1.90880 1.67363 1.47575 1.43115 1.47904 1.03094 1.52965 1.31917 1.22235 0.90573 0.96624 0.92730 1.22599 0.94948 1.02985 0.94292 1.19865 0.89877 0.82455 0.88703 1.86105 1.94027 1.34510 1.24865 1.21751 1.04419 1.33160 0.99970 0.91306 1.25780 0.98277 0.96381 0.96873 1.69821 1.30671 1.45753 1.08983 0.85570 0.79645 0.79044 0.77140 1.19688 1.21365 1.19444 1.22752 0.91252 0.95737 0.89768 1.20439 0.92590 0.88582 1.09005 1.98394 1.76116 1.39405 1.87874 1.20980 0.90580 0.98087 0.95082 0.82057 0.83925 0.73975 0.88633 0.90696 0.89684 0.89063 0.77857 0.92207 0.93219 0.93518 0.81224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.67 18.54 19.00 0.35 -10.32 16 2 C 0.29 5.30 15.33 88.33 1.35 6.65 16 3 C -0.04 -0.67 5.74 -21.29 -0.12 -0.79 16 4 C -0.03 -0.49 9.75 22.52 0.22 -0.27 16 5 C -0.13 -2.88 8.67 22.34 0.19 -2.69 16 6 C 0.20 4.65 6.30 38.33 0.24 4.89 16 7 N -0.67 -16.97 4.99 -317.04 -1.58 -18.55 16 8 C 0.71 25.10 8.33 179.05 1.49 26.59 16 9 O -0.61 -25.65 13.99 -3.98 -0.06 -25.71 16 10 N -0.62 -22.69 3.33 -829.78 -2.76 -25.45 16 11 C 0.10 2.85 6.16 86.73 0.53 3.38 16 12 C -0.11 -3.77 6.13 31.79 0.19 -3.58 16 13 C 0.23 10.43 0.87 -10.16 -0.01 10.42 16 14 O -0.59 -28.59 13.16 -148.98 -1.96 -30.55 16 15 C -0.55 -27.36 8.27 25.60 0.21 -27.14 16 16 H 0.07 3.28 7.79 -2.91 -0.02 3.25 16 17 C 0.03 1.41 5.29 84.66 0.45 1.86 16 18 N -0.91 -47.96 10.69 21.45 0.23 -47.73 16 19 Si 0.96 40.30 29.54 68.60 2.03 42.33 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.29 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 23 C 0.13 5.80 5.38 86.85 0.47 6.27 16 24 C -0.08 -1.38 6.33 22.40 0.14 -1.23 16 25 Cl -0.05 -0.79 27.93 -2.72 -0.08 -0.87 16 26 C -0.03 -0.38 9.52 22.54 0.21 -0.16 16 27 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 28 H 0.14 3.92 6.18 -2.91 -0.02 3.90 16 29 H 0.42 8.51 7.05 -92.71 -0.65 7.86 16 30 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.09 2.87 8.03 -2.39 -0.02 2.85 16 34 H 0.37 19.21 7.57 -74.05 -0.56 18.65 16 35 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 36 H 0.05 2.62 7.33 -2.38 -0.02 2.61 16 37 H 0.05 2.20 8.03 -2.39 -0.02 2.18 16 38 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -62.05 346.37 1.69 -60.36 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: -0.07 Total: 32.27 kcal Atomic # 6 Polarization: 18.63 SS G_CDS: 5.58 Total: 24.21 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -3.76 Total: -102.05 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -2.02 Total: -56.25 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -62.05 1.69 -60.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365769841.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.038 kcal (2) G-P(sol) polarization free energy of solvation -62.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds