Wall clock time and date at job start Tue Mar 31 2020 19:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34233 * 126.28267 * 2 1 4 4 H 0.96995 * 125.73594 * 0.04207 * 3 2 1 5 5 N 1.39926 * 108.52373 * 179.97438 * 3 2 1 6 6 C 1.30537 * 108.89466 * 359.75250 * 5 3 2 7 7 Cl 1.73601 * 126.00460 * 180.26224 * 6 5 3 8 8 C 1.38068 * 126.27877 * 180.02562 * 2 1 3 9 9 C 1.47389 * 126.42284 * 359.95711 * 8 2 1 10 10 O 1.21613 * 119.99496 * 90.00623 * 9 8 2 11 11 N 1.34768 * 120.00278 * 270.00333 * 9 8 2 12 12 C 1.46503 * 120.00179 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47448 * 180.02562 * 12 11 9 14 14 C 1.38299 * 119.93217 * 269.73027 * 13 12 11 15 15 C 1.38093 * 120.06953 * 179.72477 * 14 13 12 16 16 C 1.38883 * 119.92808 * 0.56550 * 15 14 13 17 17 O 1.35754 * 120.06438 * 179.68623 * 16 15 14 18 18 C 1.34826 * 116.99724 * 174.49160 * 17 16 15 19 19 H 1.07998 * 120.00100 * 5.04739 * 18 17 16 20 20 C 1.38654 * 119.99970 * 185.05457 * 18 17 16 21 21 N 1.31562 * 120.00282 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00220 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47275 * 89.99838 * 22 20 18 24 24 H 1.48495 * 109.47094 * 210.00170 * 22 20 18 25 25 H 1.48506 * 109.46791 * 330.00186 * 22 20 18 26 26 C 1.38871 * 119.86468 * 359.70509 * 16 15 14 27 27 C 1.38101 * 119.93230 * 0.02562 * 26 16 15 28 28 H 1.08996 * 109.47567 * 270.00021 * 1 2 3 29 29 H 1.09005 * 109.47129 * 29.99589 * 1 2 3 30 30 H 1.09002 * 109.47456 * 149.99370 * 1 2 3 31 31 H 0.97000 * 120.00448 * 0.02562 * 11 9 8 32 32 H 1.09002 * 109.46848 * 59.99850 * 12 11 9 33 33 H 1.09001 * 109.46885 * 300.00464 * 12 11 9 34 34 H 1.08005 * 119.96050 * 359.97425 * 14 13 12 35 35 H 1.07999 * 120.03730 * 180.26989 * 15 14 13 36 36 H 0.96996 * 120.00604 * 179.97438 * 21 20 18 37 37 H 1.08002 * 120.03853 * 179.97438 * 26 16 15 38 38 H 1.07997 * 119.96732 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0046 0.0006 5 7 3.6339 0.6553 0.0006 6 6 3.6598 -0.6498 0.0063 7 17 5.0841 -1.6423 0.0157 8 6 2.3240 -1.1130 -0.0005 9 6 1.8857 -2.5203 -0.0002 10 8 1.7044 -3.1008 -1.0534 11 7 1.6860 -3.1637 1.1670 12 6 1.2509 -4.5626 1.1672 13 6 1.1015 -5.0421 2.5881 14 6 2.1760 -5.6226 3.2370 15 6 2.0439 -6.0578 4.5409 16 6 0.8271 -5.9226 5.1966 17 8 0.6924 -6.3553 6.4763 18 6 -0.4779 -6.0915 7.0916 19 1 -1.2853 -5.6311 6.5417 20 6 -0.6447 -6.4112 8.4304 21 7 -1.7865 -6.1533 9.0310 22 14 0.7517 -7.2080 9.3815 23 1 1.5979 -6.1532 9.9951 24 1 0.1918 -8.0763 10.4482 25 1 1.5755 -8.0280 8.4572 26 6 -0.2515 -5.3444 4.5404 27 6 -0.1116 -4.9060 3.2383 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 1.8302 -2.7006 2.0070 32 1 1.9927 -5.1738 0.6531 33 1 0.2930 -4.6452 0.6536 34 1 3.1205 -5.7321 2.7247 35 1 2.8846 -6.5071 5.0486 36 1 -1.9034 -6.3772 9.9675 37 1 -1.1992 -5.2382 5.0475 38 1 -0.9502 -4.4566 2.7273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412480339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:42 Heat of formation + Delta-G solvation = 26.596619 kcal Electronic energy + Delta-G solvation = -24833.020365 eV Core-core repulsion = 20896.762923 eV Total energy + Delta-G solvation = -3936.257443 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.88117 -39.57208 -38.99098 -37.12584 -37.01434 -34.43160 -33.10199 -32.49887 -31.78857 -30.40056 -29.99918 -27.94512 -26.10036 -24.68364 -22.58612 -22.32227 -22.18125 -20.62469 -19.99525 -18.32236 -17.98122 -17.39755 -16.75846 -16.22382 -15.59820 -15.43548 -15.26284 -14.75104 -14.66086 -14.14521 -13.94694 -13.83311 -13.65894 -13.56052 -13.36931 -12.89610 -12.79760 -12.67307 -12.28621 -12.28062 -12.04975 -11.96970 -11.51101 -11.09806 -10.99597 -10.85562 -10.78145 -10.23678 -10.09875 -9.82886 -9.49863 -9.13772 -9.02169 -8.96311 -8.38810 -7.49112 -6.51389 -4.18339 1.12638 1.13868 1.79226 1.98405 2.01975 2.45896 2.52852 3.15857 3.19941 3.34023 3.42958 4.09358 4.15728 4.38575 4.41917 4.65050 4.74014 4.86467 4.98089 5.00862 5.14892 5.28260 5.33790 5.35807 5.54575 5.56303 5.71829 5.86859 6.02135 6.23673 6.42567 6.46498 6.55508 6.66896 6.87668 6.89242 7.11480 7.17436 7.48538 7.54200 7.69280 7.92976 8.18828 8.83349 9.44239 10.55789 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.002393 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.880926 B =11696.459012 C =11976.267698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.146 3.854 3 N -0.447 5.447 4 H 0.448 0.552 5 N -0.277 5.277 6 C 0.160 3.840 7 Cl 0.022 6.978 8 C -0.270 4.270 9 C 0.594 3.406 10 O -0.534 6.534 11 N -0.710 5.710 12 C 0.177 3.823 13 C -0.206 4.206 14 C -0.055 4.055 15 C -0.195 4.195 16 C 0.167 3.833 17 O -0.213 6.213 18 C -0.391 4.391 19 H 0.108 0.892 20 C 0.065 3.935 21 N -0.876 5.876 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.225 4.225 27 C -0.052 4.052 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.403 0.597 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.281 0.719 37 H 0.134 0.866 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.123 13.002 -16.592 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.013 3.987 3 N -0.157 5.157 4 H 0.295 0.705 5 N -0.102 5.102 6 C -0.032 4.032 7 Cl 0.050 6.950 8 C -0.286 4.286 9 C 0.377 3.623 10 O -0.411 6.411 11 N -0.361 5.361 12 C 0.055 3.945 13 C -0.207 4.207 14 C -0.074 4.074 15 C -0.214 4.214 16 C 0.114 3.886 17 O -0.117 6.117 18 C -0.467 4.467 19 H 0.125 0.875 20 C -0.139 4.139 21 N -0.513 5.513 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.183 1.183 26 C -0.244 4.244 27 C -0.071 4.071 28 H 0.114 0.886 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.238 0.762 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.091 0.909 37 H 0.152 0.848 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.847 13.348 -16.978 22.656 hybrid contribution 0.013 -0.293 1.017 1.058 sum 6.860 13.056 -15.961 21.732 Atomic orbital electron populations 1.20668 0.85524 1.05155 1.04744 1.21446 0.94912 0.85935 0.96387 1.45846 1.03020 1.08697 1.58124 0.70525 1.77164 0.96539 1.10743 1.25789 1.22570 0.88850 0.90497 1.01320 1.98431 1.35166 1.64696 1.96699 1.19835 0.91102 0.94669 1.22944 1.17126 0.76949 0.84180 0.84013 1.90795 1.51195 1.67678 1.31411 1.46319 1.67940 1.13603 1.08205 1.20049 1.00036 0.80416 0.93998 1.19270 0.95350 1.10183 0.95924 1.20552 0.97313 0.96194 0.93330 1.20219 0.96183 1.09411 0.95589 1.19187 0.93178 0.91262 0.85001 1.83578 1.38479 1.67919 1.21738 1.20782 0.89196 1.42116 0.94587 0.87501 1.24485 0.97475 0.96410 0.95545 1.69639 1.23717 1.45406 1.12554 0.86179 0.81513 0.79835 0.79397 1.19805 1.20691 1.18284 1.21271 1.00308 1.06943 0.95846 1.20689 0.95947 0.96659 0.93784 0.88639 0.89897 0.88626 0.76198 0.91211 0.91216 0.86692 0.86374 0.90905 0.84825 0.87085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.53 10.25 36.00 0.37 -0.16 16 2 C 0.15 1.22 7.29 -81.61 -0.60 0.62 16 3 N -0.45 -3.39 7.28 33.86 0.25 -3.14 16 4 H 0.45 1.65 8.96 -182.73 -1.64 0.01 16 5 N -0.28 -3.05 12.64 33.18 0.42 -2.63 16 6 C 0.16 1.91 7.89 -16.90 -0.13 1.77 16 7 Cl 0.02 0.25 29.19 -51.86 -1.51 -1.26 16 8 C -0.27 -3.08 5.88 -105.04 -0.62 -3.70 16 9 C 0.59 7.71 7.17 -12.54 -0.09 7.62 16 10 O -0.53 -8.71 17.11 5.27 0.09 -8.62 16 11 N -0.71 -8.41 5.54 -62.57 -0.35 -8.76 16 12 C 0.18 2.26 5.80 -5.19 -0.03 2.23 16 13 C -0.21 -3.02 5.25 -104.57 -0.55 -3.56 16 14 C -0.06 -0.85 9.69 -39.61 -0.38 -1.23 16 15 C -0.19 -3.56 9.99 -39.40 -0.39 -3.96 16 16 C 0.17 3.59 6.65 -39.11 -0.26 3.33 16 17 O -0.21 -5.35 8.59 0.05 0.00 -5.35 16 18 C -0.39 -10.56 9.95 30.89 0.31 -10.26 16 19 H 0.11 2.93 5.44 -52.49 -0.29 2.64 16 20 C 0.06 1.75 5.49 -17.51 -0.10 1.66 16 21 N -0.88 -24.49 13.96 55.48 0.77 -23.72 16 22 Si 0.91 20.95 28.62 -169.99 -4.86 16.08 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 26 C -0.22 -4.44 9.17 -39.40 -0.36 -4.80 16 27 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.10 0.61 7.96 -51.93 -0.41 0.20 16 31 H 0.40 4.42 8.45 -40.82 -0.34 4.08 16 32 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 33 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 34 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 35 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 38 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -32.03 355.79 -8.12 -40.15 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.07 Total: 3.55 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -3.22 Total: -11.65 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 1.09 Total: -38.25 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.09 Total: -13.98 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.86 Total: 16.08 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.51 Total: -1.26 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.03 -8.12 -40.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412480339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.742 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds