Wall clock time and date at job start Tue Mar 31 2020 19:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34233 * 126.28267 * 2 1 4 4 H 0.96995 * 125.73594 * 0.04207 * 3 2 1 5 5 N 1.39926 * 108.52373 * 179.97438 * 3 2 1 6 6 C 1.30537 * 108.89466 * 359.75250 * 5 3 2 7 7 Cl 1.73601 * 126.00460 * 180.26224 * 6 5 3 8 8 C 1.38068 * 126.27877 * 180.02562 * 2 1 3 9 9 C 1.47389 * 126.42284 * 359.95711 * 8 2 1 10 10 O 1.21613 * 119.99496 * 90.00623 * 9 8 2 11 11 N 1.34768 * 120.00278 * 270.00333 * 9 8 2 12 12 C 1.46503 * 120.00179 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47448 * 180.02562 * 12 11 9 14 14 C 1.38299 * 119.93217 * 269.73027 * 13 12 11 15 15 C 1.38093 * 120.06953 * 179.72477 * 14 13 12 16 16 C 1.38883 * 119.92808 * 0.56550 * 15 14 13 17 17 O 1.35754 * 120.06438 * 179.68623 * 16 15 14 18 18 C 1.34826 * 116.99724 * 174.49160 * 17 16 15 19 19 H 1.07998 * 120.00100 * 5.04739 * 18 17 16 20 20 C 1.38654 * 119.99970 * 185.05457 * 18 17 16 21 21 N 1.31562 * 120.00282 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00220 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47275 * 89.99838 * 22 20 18 24 24 H 1.48495 * 109.47094 * 210.00170 * 22 20 18 25 25 H 1.48506 * 109.46791 * 330.00186 * 22 20 18 26 26 C 1.38871 * 119.86468 * 359.70509 * 16 15 14 27 27 C 1.38101 * 119.93230 * 0.02562 * 26 16 15 28 28 H 1.08996 * 109.47567 * 270.00021 * 1 2 3 29 29 H 1.09005 * 109.47129 * 29.99589 * 1 2 3 30 30 H 1.09002 * 109.47456 * 149.99370 * 1 2 3 31 31 H 0.97000 * 120.00448 * 0.02562 * 11 9 8 32 32 H 1.09002 * 109.46848 * 59.99850 * 12 11 9 33 33 H 1.09001 * 109.46885 * 300.00464 * 12 11 9 34 34 H 1.08005 * 119.96050 * 359.97425 * 14 13 12 35 35 H 1.07999 * 120.03730 * 180.26989 * 15 14 13 36 36 H 0.96996 * 120.00604 * 179.97438 * 21 20 18 37 37 H 1.08002 * 120.03853 * 179.97438 * 26 16 15 38 38 H 1.07997 * 119.96732 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0046 0.0006 5 7 3.6339 0.6553 0.0006 6 6 3.6598 -0.6498 0.0063 7 17 5.0841 -1.6423 0.0157 8 6 2.3240 -1.1130 -0.0005 9 6 1.8857 -2.5203 -0.0002 10 8 1.7044 -3.1008 -1.0534 11 7 1.6860 -3.1637 1.1670 12 6 1.2509 -4.5626 1.1672 13 6 1.1015 -5.0421 2.5881 14 6 2.1760 -5.6226 3.2370 15 6 2.0439 -6.0578 4.5409 16 6 0.8271 -5.9226 5.1966 17 8 0.6924 -6.3553 6.4763 18 6 -0.4779 -6.0915 7.0916 19 1 -1.2853 -5.6311 6.5417 20 6 -0.6447 -6.4112 8.4304 21 7 -1.7865 -6.1533 9.0310 22 14 0.7517 -7.2080 9.3815 23 1 1.5979 -6.1532 9.9951 24 1 0.1918 -8.0763 10.4482 25 1 1.5755 -8.0280 8.4572 26 6 -0.2515 -5.3444 4.5404 27 6 -0.1116 -4.9060 3.2383 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 1.8302 -2.7006 2.0070 32 1 1.9927 -5.1738 0.6531 33 1 0.2930 -4.6452 0.6536 34 1 3.1205 -5.7321 2.7247 35 1 2.8846 -6.5071 5.0486 36 1 -1.9034 -6.3772 9.9675 37 1 -1.1992 -5.2382 5.0475 38 1 -0.9502 -4.4566 2.7273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412480339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:41 Heat of formation + Delta-G solvation = 4.409094 kcal Electronic energy + Delta-G solvation = -24833.982489 eV Core-core repulsion = 20896.762923 eV Total energy + Delta-G solvation = -3937.219566 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.63215 -40.99625 -40.21388 -38.54148 -37.95554 -35.61811 -34.42932 -33.75006 -32.65915 -31.83847 -31.25807 -28.65356 -27.66899 -26.14053 -23.70785 -23.50369 -23.08347 -22.02137 -20.92558 -19.83017 -19.19999 -18.97391 -17.65342 -17.23946 -16.73674 -16.37591 -16.23124 -16.17415 -15.90830 -15.68590 -15.52693 -15.19518 -14.62834 -14.57294 -14.29431 -14.14152 -14.06083 -14.03743 -13.35230 -13.25173 -13.09998 -13.00358 -12.81719 -12.59126 -12.45506 -12.30465 -11.93154 -11.91488 -11.27881 -11.18186 -10.88721 -10.57496 -10.07068 -9.91177 -9.80337 -9.07090 -8.49873 -6.22372 0.34704 0.43575 0.52226 0.57895 1.00920 1.33190 1.36031 1.48847 1.52736 1.85684 2.28266 2.39142 2.82149 3.07801 3.17326 3.48920 3.74894 3.85020 3.97979 4.04285 4.10004 4.17316 4.47806 4.57596 4.64149 4.66180 4.75469 4.79405 4.86471 4.99012 5.07412 5.25585 5.35706 5.41251 5.56601 5.73652 5.81189 5.90240 5.96893 6.21602 6.22425 6.54915 6.84778 7.19927 7.58644 8.61386 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.002393 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.880926 B =11696.459012 C =11976.267698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.166 3.834 3 N -0.429 5.429 4 H 0.466 0.534 5 N -0.298 5.298 6 C 0.148 3.852 7 Cl 0.016 6.984 8 C -0.302 4.302 9 C 0.603 3.397 10 O -0.570 6.570 11 N -0.702 5.702 12 C 0.181 3.819 13 C -0.173 4.173 14 C -0.047 4.047 15 C -0.194 4.194 16 C 0.129 3.871 17 O -0.244 6.244 18 C -0.398 4.398 19 H 0.085 0.915 20 C 0.012 3.988 21 N -0.922 5.922 22 Si 0.968 3.032 23 H -0.266 1.266 24 H -0.269 1.269 25 H -0.262 1.262 26 C -0.238 4.238 27 C -0.046 4.046 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.410 0.590 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.151 0.849 35 H 0.128 0.872 36 H 0.285 0.715 37 H 0.111 0.889 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.149 14.242 -18.572 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.032 3.968 3 N -0.140 5.140 4 H 0.316 0.684 5 N -0.124 5.124 6 C -0.045 4.045 7 Cl 0.044 6.956 8 C -0.318 4.318 9 C 0.388 3.612 10 O -0.449 6.449 11 N -0.352 5.352 12 C 0.059 3.941 13 C -0.174 4.174 14 C -0.065 4.065 15 C -0.213 4.213 16 C 0.079 3.921 17 O -0.151 6.151 18 C -0.474 4.474 19 H 0.102 0.898 20 C -0.187 4.187 21 N -0.563 5.563 22 Si 0.790 3.210 23 H -0.191 1.191 24 H -0.194 1.194 25 H -0.187 1.187 26 C -0.257 4.257 27 C -0.065 4.065 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.104 0.896 31 H 0.246 0.754 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.168 0.832 35 H 0.146 0.854 36 H 0.094 0.906 37 H 0.129 0.871 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.894 14.635 -18.987 25.239 hybrid contribution -0.268 -0.503 1.235 1.360 sum 7.626 14.132 -17.752 23.938 Atomic orbital electron populations 1.20839 0.83006 1.06208 1.05994 1.21857 0.96118 0.85079 0.93719 1.45870 1.01898 1.09616 1.56664 0.68383 1.77097 0.98396 1.10460 1.26431 1.22668 0.88919 0.90849 1.02022 1.98419 1.35533 1.64903 1.96757 1.19798 0.91502 0.94568 1.25896 1.17215 0.75954 0.84608 0.83392 1.90779 1.52854 1.68631 1.32609 1.46151 1.67512 1.13127 1.08423 1.20006 1.00962 0.80995 0.92158 1.19536 0.94271 1.07139 0.96460 1.20952 0.98926 0.94525 0.92108 1.20498 0.95213 1.08977 0.96593 1.19741 0.95062 0.92915 0.84366 1.83527 1.37480 1.70525 1.23548 1.20720 0.89669 1.42066 0.94977 0.89756 1.25249 0.99774 0.97267 0.96410 1.69721 1.25524 1.47875 1.13133 0.85255 0.78606 0.79061 0.78066 1.19100 1.19431 1.18676 1.21278 0.99164 1.07817 0.97419 1.20944 0.97587 0.95716 0.92234 0.87095 0.86841 0.89592 0.75427 0.90492 0.90328 0.83171 0.85408 0.90578 0.87141 0.84226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.25 71.24 0.73 0.04 16 2 C 0.17 2.29 7.29 42.15 0.31 2.60 16 3 N -0.43 -5.29 7.28 -46.80 -0.34 -5.63 16 4 H 0.47 1.90 8.96 -213.44 -1.91 -0.01 16 5 N -0.30 -6.02 12.64 -48.95 -0.62 -6.64 16 6 C 0.15 3.28 7.89 85.66 0.68 3.95 16 7 Cl 0.02 0.35 29.19 -2.72 -0.08 0.27 16 8 C -0.30 -6.25 5.88 -20.13 -0.12 -6.37 16 9 C 0.60 14.27 7.17 86.65 0.62 14.89 16 10 O -0.57 -17.48 17.11 -4.07 -0.07 -17.55 16 11 N -0.70 -14.44 5.54 -470.14 -2.61 -17.05 16 12 C 0.18 3.94 5.80 85.63 0.50 4.43 16 13 C -0.17 -4.48 5.25 -19.83 -0.10 -4.59 16 14 C -0.05 -1.28 9.69 22.25 0.22 -1.06 16 15 C -0.19 -6.79 9.99 22.39 0.22 -6.56 16 16 C 0.13 5.61 6.65 22.58 0.15 5.76 16 17 O -0.24 -12.66 8.59 -22.74 -0.20 -12.86 16 18 C -0.40 -22.57 9.95 67.92 0.68 -21.90 16 19 H 0.08 4.97 5.44 -2.91 -0.02 4.96 16 20 C 0.01 0.66 5.49 84.83 0.47 1.12 16 21 N -0.92 -53.71 13.96 21.61 0.30 -53.41 16 22 Si 0.97 44.23 28.62 68.60 1.96 46.19 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 26 C -0.24 -9.49 9.17 22.39 0.21 -9.29 16 27 C -0.05 -1.39 9.69 22.25 0.22 -1.17 16 28 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.11 0.11 8.14 -2.38 -0.02 0.09 16 30 H 0.09 0.84 7.96 -2.39 -0.02 0.82 16 31 H 0.41 7.66 8.45 -92.71 -0.78 6.88 16 32 H 0.08 1.67 8.08 -2.39 -0.02 1.65 16 33 H 0.08 1.67 8.08 -2.39 -0.02 1.65 16 34 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 35 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 36 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.11 4.92 5.64 -2.91 -0.02 4.90 16 38 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -72.99 355.79 1.57 -71.42 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -1.55 Total: 13.40 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 4.76 Total: -18.14 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -3.26 Total: -82.73 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.26 Total: -30.41 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.96 Total: 46.19 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -0.08 Total: 0.27 kcal Total: -72.99 1.57 -71.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412480339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.832 kcal (2) G-P(sol) polarization free energy of solvation -72.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds