Wall clock time and date at job start Tue Mar 31 2020 19:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86801 * 120.00312 * 2 1 4 4 H 1.48501 * 109.46895 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47086 * 119.99674 * 3 2 1 6 6 H 1.48491 * 109.47072 * 240.00027 * 3 2 1 7 7 C 1.40309 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99558 * 159.33536 * 7 2 1 9 9 C 1.40530 * 120.00320 * 339.34545 * 7 2 1 10 10 C 1.44188 * 123.71334 * 335.81209 * 9 7 2 11 11 C 1.32762 * 114.43297 * 179.97438 * 10 9 7 12 12 S 1.75475 * 111.36200 * 359.97438 * 11 10 9 13 13 C 1.39544 * 123.72036 * 155.51826 * 9 7 2 14 14 C 1.46244 * 125.22461 * 359.97438 * 13 9 7 15 15 O 1.21761 * 119.99968 * 359.97438 * 14 13 9 16 16 N 1.34775 * 119.99665 * 180.02562 * 14 13 9 17 17 C 1.46502 * 119.99552 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47127 * 180.02562 * 17 16 14 19 19 H 1.09003 * 109.47405 * 59.99845 * 18 17 16 20 20 O 1.42905 * 109.47137 * 300.00332 * 18 17 16 21 21 C 1.50695 * 109.47445 * 180.02562 * 18 17 16 22 22 C 1.38271 * 119.99008 * 84.72686 * 21 18 17 23 23 C 1.38229 * 120.05360 * 179.73091 * 22 21 18 24 24 C 1.38219 * 120.02025 * 0.54157 * 23 22 21 25 25 C 1.38432 * 119.97645 * 359.73211 * 24 23 22 26 26 F 1.35102 * 120.02672 * 180.02562 * 25 24 23 27 27 C 1.38178 * 119.99007 * 264.99937 * 21 18 17 28 28 H 0.96999 * 120.00259 * 174.00398 * 1 2 3 29 29 H 1.07997 * 122.78433 * 359.92679 * 10 9 7 30 30 H 1.08005 * 124.32243 * 179.97438 * 11 10 9 31 31 H 0.96997 * 120.00268 * 359.97438 * 16 14 13 32 32 H 1.08996 * 109.47568 * 300.00237 * 17 16 14 33 33 H 1.09005 * 109.46945 * 60.00480 * 17 16 14 34 34 H 0.96706 * 113.99870 * 299.99962 * 20 18 17 35 35 H 1.08005 * 119.97190 * 359.97438 * 22 21 18 36 36 H 1.07994 * 119.98738 * 180.27266 * 23 22 21 37 37 H 1.08008 * 120.00625 * 179.70430 * 24 23 22 38 38 H 1.08006 * 120.00682 * 0.02562 * 27 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 1.2755 2.7464 -0.0006 5 1 3.0942 1.6963 1.2125 6 1 3.0942 1.6963 -1.2124 7 6 2.0079 -1.2151 0.0005 8 1 3.0358 -1.2453 -0.3295 9 6 1.3730 -2.3929 0.4303 10 6 0.2445 -2.4120 1.3276 11 6 -0.2109 -3.6264 1.6115 12 16 0.7196 -4.8663 0.7892 13 6 1.7615 -3.6723 0.0312 14 6 2.8669 -3.9730 -0.8779 15 8 3.5301 -3.0677 -1.3503 16 7 3.1507 -5.2522 -1.1936 17 6 4.2577 -5.5534 -2.1047 18 6 4.3643 -7.0678 -2.2947 19 1 3.4334 -7.4475 -2.7159 20 8 4.6043 -7.6906 -1.0311 21 6 5.5033 -7.3777 -3.2314 22 6 6.7929 -7.4762 -2.7425 23 6 7.8380 -7.7659 -3.5996 24 6 7.5963 -7.9464 -4.9485 25 6 6.3063 -7.8424 -5.4401 26 9 6.0689 -8.0191 -6.7582 27 6 5.2594 -7.5577 -4.5795 28 1 -0.4850 -0.8354 -0.0877 29 1 -0.1935 -1.5131 1.7356 30 1 -1.0473 -3.8257 2.2650 31 1 2.6221 -5.9733 -0.8176 32 1 4.0744 -5.0787 -3.0686 33 1 5.1885 -5.1733 -1.6837 34 1 5.4181 -7.3995 -0.5974 35 1 6.9833 -7.3306 -1.6894 36 1 8.8442 -7.8470 -3.2159 37 1 8.4137 -8.1681 -5.6188 38 1 4.2527 -7.4759 -4.9620 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412662017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:53 Heat of formation + Delta-G solvation = -95.476879 kcal Electronic energy + Delta-G solvation = -24993.026438 eV Core-core repulsion = 21033.599236 eV Total energy + Delta-G solvation = -3959.427202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.13935 -39.97109 -38.39763 -37.10667 -36.29916 -33.52788 -33.03854 -32.03311 -30.71376 -29.27731 -28.12328 -25.76391 -23.80411 -23.11279 -22.37217 -21.43747 -20.15362 -19.06267 -18.15898 -17.94684 -16.85266 -16.49437 -16.34045 -16.24434 -15.83589 -15.31024 -14.79065 -14.77987 -14.23723 -14.09379 -13.83976 -13.81105 -13.61221 -13.25524 -13.05100 -12.74972 -12.28273 -12.15749 -12.06661 -11.90334 -11.84531 -11.39646 -11.22143 -11.07177 -10.73022 -10.45538 -10.38621 -10.09964 -9.75766 -9.30075 -9.16820 -8.99166 -8.55301 -8.34380 -7.79156 -7.36452 -7.33460 -4.60875 0.80505 0.87889 2.01403 2.93407 3.04572 3.09666 3.21020 3.31057 3.53560 3.65961 3.77461 3.89821 3.97274 4.24610 4.38163 4.44044 4.49615 4.72226 4.76658 4.87599 5.04048 5.07432 5.12128 5.45895 5.68548 5.76431 5.80904 5.82022 5.86849 5.97538 6.17507 6.38583 6.55067 6.75134 6.96368 7.14644 7.24076 7.26106 7.39459 7.75059 7.91548 8.39165 8.47189 8.71943 9.51285 9.75196 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.002751 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.175425 B =10174.882599 C =11316.388270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.029 3.971 3 Si 1.074 2.926 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.425 4.425 8 H 0.109 0.891 9 C 0.113 3.887 10 C -0.144 4.144 11 C -0.187 4.187 12 S -0.032 6.032 13 C -0.437 4.437 14 C 0.599 3.401 15 O -0.565 6.565 16 N -0.747 5.747 17 C 0.104 3.896 18 C 0.137 3.863 19 H 0.116 0.884 20 O -0.547 6.547 21 C -0.080 4.080 22 C -0.120 4.120 23 C -0.087 4.087 24 C -0.155 4.155 25 C 0.100 3.900 26 F -0.139 7.139 27 C -0.142 4.142 28 H 0.301 0.699 29 H 0.131 0.869 30 H 0.141 0.859 31 H 0.394 0.606 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.376 0.624 35 H 0.130 0.870 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.720 -12.219 -4.271 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.195 4.195 3 Si 0.896 3.104 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.455 4.455 8 H 0.127 0.873 9 C 0.102 3.898 10 C -0.177 4.177 11 C -0.321 4.321 12 S 0.223 5.777 13 C -0.556 4.556 14 C 0.397 3.603 15 O -0.449 6.449 16 N -0.401 5.401 17 C -0.021 4.021 18 C 0.077 3.923 19 H 0.134 0.866 20 O -0.353 6.353 21 C -0.081 4.081 22 C -0.138 4.138 23 C -0.105 4.105 24 C -0.174 4.174 25 C 0.081 3.919 26 F -0.118 7.118 27 C -0.161 4.161 28 H 0.115 0.885 29 H 0.149 0.851 30 H 0.159 0.841 31 H 0.228 0.772 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.225 0.775 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.284 -11.805 -4.783 15.762 hybrid contribution 0.288 -0.418 0.004 0.507 sum 9.572 -12.223 -4.779 16.244 Atomic orbital electron populations 1.70438 1.08390 1.34552 1.26626 1.27555 0.95664 1.05251 0.91057 0.83504 0.75576 0.72696 0.78673 1.19633 1.19595 1.19433 1.20977 1.02106 0.91352 1.31100 0.87294 1.17892 0.89515 0.92365 0.90026 1.21586 0.98733 0.96940 1.00444 1.24965 1.04485 0.96670 1.05986 1.82811 1.31017 1.12399 1.51433 1.22411 1.14681 0.94511 1.24009 1.16804 0.82781 0.80879 0.79879 1.90662 1.52729 1.45229 1.56233 1.45700 1.35034 1.08506 1.50853 1.21692 0.91854 0.93082 0.95467 1.21098 0.95867 0.92424 0.82898 0.86626 1.86647 1.47429 1.68250 1.32940 1.20312 0.95651 0.98222 0.93956 1.20985 0.91886 1.00426 1.00495 1.20983 0.99549 0.97655 0.92279 1.21180 0.95455 1.03843 0.96930 1.17662 0.94211 1.02109 0.77899 1.91511 1.95277 1.92865 1.32147 1.20999 0.99439 1.02683 0.92951 0.88499 0.85144 0.84117 0.77156 0.91236 0.91816 0.77548 0.85226 0.84735 0.84695 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.52 12.48 55.57 0.69 -18.82 16 2 C 0.03 0.71 5.23 -17.28 -0.09 0.62 16 3 Si 1.07 21.18 29.99 -169.99 -5.10 16.08 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.43 -11.43 8.44 -37.94 -0.32 -11.75 16 8 H 0.11 3.10 6.14 -52.49 -0.32 2.77 16 9 C 0.11 2.96 5.41 -106.21 -0.57 2.38 16 10 C -0.14 -3.37 8.19 -39.12 -0.32 -3.69 16 11 C -0.19 -3.90 11.07 28.86 0.32 -3.58 16 12 S -0.03 -0.68 22.25 -107.50 -2.39 -3.07 16 13 C -0.44 -10.94 6.51 -35.88 -0.23 -11.17 16 14 C 0.60 14.54 7.76 -13.05 -0.10 14.44 16 15 O -0.57 -15.40 14.46 5.13 0.07 -15.32 16 16 N -0.75 -14.09 5.44 -61.75 -0.34 -14.42 16 17 C 0.10 1.59 5.32 -4.04 -0.02 1.56 16 18 C 0.14 1.59 3.30 -27.89 -0.09 1.49 16 19 H 0.12 1.31 8.05 -51.93 -0.42 0.89 16 20 O -0.55 -6.35 12.88 -35.23 -0.45 -6.80 16 21 C -0.08 -0.84 5.00 -104.63 -0.52 -1.36 16 22 C -0.12 -1.08 9.33 -39.57 -0.37 -1.44 16 23 C -0.09 -0.70 10.04 -39.59 -0.40 -1.10 16 24 C -0.16 -1.38 10.03 -39.52 -0.40 -1.77 16 25 C 0.10 1.07 7.30 -39.42 -0.29 0.78 16 26 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 27 C -0.14 -1.51 9.66 -39.52 -0.38 -1.89 16 28 H 0.30 7.67 6.22 -40.82 -0.25 7.42 16 29 H 0.13 3.01 6.77 -52.49 -0.36 2.66 16 30 H 0.14 2.45 8.06 -52.48 -0.42 2.03 16 31 H 0.39 7.00 7.43 -40.82 -0.30 6.69 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.38 3.27 7.39 45.56 0.34 3.60 16 35 H 0.13 0.90 6.62 -52.48 -0.35 0.55 16 36 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -30.88 345.81 -9.05 -39.92 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -3.00 Total: 15.25 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -3.79 Total: -16.48 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.36 Total: -33.25 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.38 Total: -22.12 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.10 Total: 16.08 kcal Atomic # 16 Polarization: -0.68 SS G_CDS: -2.39 Total: -3.07 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.88 -9.05 -39.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412662017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.554 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds