Wall clock time and date at job start Tue Mar 31 2020 19:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86801 * 120.00312 * 2 1 4 4 H 1.48501 * 109.46895 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47086 * 119.99674 * 3 2 1 6 6 H 1.48491 * 109.47072 * 240.00027 * 3 2 1 7 7 C 1.40309 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99558 * 159.33536 * 7 2 1 9 9 C 1.40530 * 120.00320 * 339.34545 * 7 2 1 10 10 C 1.44188 * 123.71334 * 335.81209 * 9 7 2 11 11 C 1.32762 * 114.43297 * 179.97438 * 10 9 7 12 12 S 1.75475 * 111.36200 * 359.97438 * 11 10 9 13 13 C 1.39544 * 123.72036 * 155.51826 * 9 7 2 14 14 C 1.46244 * 125.22461 * 359.97438 * 13 9 7 15 15 O 1.21761 * 119.99968 * 359.97438 * 14 13 9 16 16 N 1.34775 * 119.99665 * 180.02562 * 14 13 9 17 17 C 1.46502 * 119.99552 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47127 * 180.02562 * 17 16 14 19 19 H 1.09003 * 109.47405 * 59.99845 * 18 17 16 20 20 O 1.42905 * 109.47137 * 300.00332 * 18 17 16 21 21 C 1.50695 * 109.47445 * 180.02562 * 18 17 16 22 22 C 1.38271 * 119.99008 * 84.72686 * 21 18 17 23 23 C 1.38229 * 120.05360 * 179.73091 * 22 21 18 24 24 C 1.38219 * 120.02025 * 0.54157 * 23 22 21 25 25 C 1.38432 * 119.97645 * 359.73211 * 24 23 22 26 26 F 1.35102 * 120.02672 * 180.02562 * 25 24 23 27 27 C 1.38178 * 119.99007 * 264.99937 * 21 18 17 28 28 H 0.96999 * 120.00259 * 174.00398 * 1 2 3 29 29 H 1.07997 * 122.78433 * 359.92679 * 10 9 7 30 30 H 1.08005 * 124.32243 * 179.97438 * 11 10 9 31 31 H 0.96997 * 120.00268 * 359.97438 * 16 14 13 32 32 H 1.08996 * 109.47568 * 300.00237 * 17 16 14 33 33 H 1.09005 * 109.46945 * 60.00480 * 17 16 14 34 34 H 0.96706 * 113.99870 * 299.99962 * 20 18 17 35 35 H 1.08005 * 119.97190 * 359.97438 * 22 21 18 36 36 H 1.07994 * 119.98738 * 180.27266 * 23 22 21 37 37 H 1.08008 * 120.00625 * 179.70430 * 24 23 22 38 38 H 1.08006 * 120.00682 * 0.02562 * 27 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 1.2755 2.7464 -0.0006 5 1 3.0942 1.6963 1.2125 6 1 3.0942 1.6963 -1.2124 7 6 2.0079 -1.2151 0.0005 8 1 3.0358 -1.2453 -0.3295 9 6 1.3730 -2.3929 0.4303 10 6 0.2445 -2.4120 1.3276 11 6 -0.2109 -3.6264 1.6115 12 16 0.7196 -4.8663 0.7892 13 6 1.7615 -3.6723 0.0312 14 6 2.8669 -3.9730 -0.8779 15 8 3.5301 -3.0677 -1.3503 16 7 3.1507 -5.2522 -1.1936 17 6 4.2577 -5.5534 -2.1047 18 6 4.3643 -7.0678 -2.2947 19 1 3.4334 -7.4475 -2.7159 20 8 4.6043 -7.6906 -1.0311 21 6 5.5033 -7.3777 -3.2314 22 6 6.7929 -7.4762 -2.7425 23 6 7.8380 -7.7659 -3.5996 24 6 7.5963 -7.9464 -4.9485 25 6 6.3063 -7.8424 -5.4401 26 9 6.0689 -8.0191 -6.7582 27 6 5.2594 -7.5577 -4.5795 28 1 -0.4850 -0.8354 -0.0877 29 1 -0.1935 -1.5131 1.7356 30 1 -1.0473 -3.8257 2.2650 31 1 2.6221 -5.9733 -0.8176 32 1 4.0744 -5.0787 -3.0686 33 1 5.1885 -5.1733 -1.6837 34 1 5.4181 -7.3995 -0.5974 35 1 6.9833 -7.3306 -1.6894 36 1 8.8442 -7.8470 -3.2159 37 1 8.4137 -8.1681 -5.6188 38 1 4.2527 -7.4759 -4.9620 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412662017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:53 Heat of formation + Delta-G solvation = -115.781329 kcal Electronic energy + Delta-G solvation = -24993.906905 eV Core-core repulsion = 21033.599236 eV Total energy + Delta-G solvation = -3960.307669 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.96087 -40.91064 -40.02723 -38.41610 -37.83648 -35.08824 -34.87878 -32.92441 -31.46464 -31.00298 -29.47618 -27.44507 -25.07911 -24.02544 -23.83686 -22.35767 -21.88919 -20.89407 -19.64967 -19.01804 -18.16149 -17.70233 -17.31450 -17.18677 -16.65955 -16.50653 -16.39779 -16.26464 -15.68991 -15.45481 -15.38091 -15.02867 -14.86507 -14.64937 -14.15596 -14.05760 -13.77488 -13.54150 -13.44341 -13.15120 -12.82894 -12.75016 -12.71365 -12.51453 -12.08935 -12.02164 -11.87359 -11.53678 -11.33876 -10.97996 -10.49624 -10.06280 -10.01216 -9.74126 -9.66855 -9.23664 -9.12918 -6.54836 0.05596 0.15267 0.18174 1.20681 1.39039 1.47211 1.66371 1.79374 1.89307 2.25531 2.33614 2.48925 2.58619 3.09462 3.14996 3.40840 3.55050 3.72061 3.74794 4.02857 4.06810 4.14692 4.20075 4.36043 4.48503 4.62810 4.70247 4.80217 4.96088 5.00690 5.08060 5.18037 5.27611 5.33799 5.36758 5.38866 5.61027 5.84093 5.86083 5.92613 6.48658 6.58325 6.62708 6.89011 7.65841 7.82668 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.002751 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.175425 B =10174.882599 C =11316.388270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.002 3.998 3 Si 1.119 2.881 4 H -0.258 1.258 5 H -0.257 1.257 6 H -0.269 1.269 7 C -0.467 4.467 8 H 0.082 0.918 9 C 0.090 3.910 10 C -0.173 4.173 11 C -0.169 4.169 12 S 0.031 5.969 13 C -0.472 4.472 14 C 0.589 3.411 15 O -0.604 6.604 16 N -0.730 5.730 17 C 0.104 3.896 18 C 0.156 3.844 19 H 0.119 0.881 20 O -0.554 6.554 21 C -0.093 4.093 22 C -0.122 4.122 23 C -0.083 4.083 24 C -0.153 4.153 25 C 0.078 3.922 26 F -0.149 7.149 27 C -0.154 4.154 28 H 0.290 0.710 29 H 0.128 0.872 30 H 0.184 0.816 31 H 0.402 0.598 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.389 0.611 35 H 0.151 0.849 36 H 0.167 0.833 37 H 0.156 0.844 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.419 -13.783 -3.410 17.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.217 4.217 3 Si 0.935 3.065 4 H -0.182 1.182 5 H -0.181 1.181 6 H -0.194 1.194 7 C -0.498 4.498 8 H 0.100 0.900 9 C 0.079 3.921 10 C -0.207 4.207 11 C -0.303 4.303 12 S 0.288 5.712 13 C -0.590 4.590 14 C 0.386 3.614 15 O -0.490 6.490 16 N -0.383 5.383 17 C -0.021 4.021 18 C 0.096 3.904 19 H 0.137 0.863 20 O -0.361 6.361 21 C -0.094 4.094 22 C -0.140 4.140 23 C -0.101 4.101 24 C -0.171 4.171 25 C 0.059 3.941 26 F -0.128 7.128 27 C -0.173 4.173 28 H 0.103 0.897 29 H 0.146 0.854 30 H 0.201 0.799 31 H 0.237 0.763 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.240 0.760 35 H 0.169 0.831 36 H 0.184 0.816 37 H 0.173 0.827 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.980 -13.446 -3.916 17.197 hybrid contribution 0.115 -0.179 -0.275 0.348 sum 10.095 -13.625 -4.192 17.467 Atomic orbital electron populations 1.70528 1.08589 1.33771 1.28200 1.28750 0.95790 1.07530 0.89672 0.82981 0.74876 0.69529 0.79150 1.18213 1.18139 1.19399 1.20962 1.01464 0.93246 1.34085 0.90033 1.18354 0.90618 0.92839 0.90314 1.21464 0.99399 0.98096 1.01714 1.25507 1.04405 0.95705 1.04728 1.82445 1.28935 1.10119 1.49712 1.22976 1.15577 0.96153 1.24308 1.17016 0.82558 0.82086 0.79749 1.90631 1.53998 1.46823 1.57577 1.45493 1.35511 1.06851 1.50400 1.21887 0.90283 0.96044 0.93862 1.20815 0.96837 0.89356 0.83404 0.86348 1.86626 1.48527 1.68081 1.32913 1.20193 0.95936 0.99769 0.93549 1.21334 0.91410 0.99365 1.01862 1.21367 1.00788 0.96256 0.91693 1.21516 0.95220 1.02570 0.97819 1.17910 0.95138 1.03462 0.77623 1.91482 1.95420 1.93106 1.32780 1.21106 0.99818 1.03050 0.93293 0.89651 0.85389 0.79893 0.76256 0.92454 0.91902 0.76026 0.83148 0.81567 0.82664 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.50 12.48 21.89 0.27 -40.23 16 2 C 0.00 0.10 5.23 85.37 0.45 0.55 16 3 Si 1.12 43.46 29.99 68.60 2.06 45.51 16 4 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 5 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 6 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 7 C -0.47 -26.26 8.44 23.33 0.20 -26.07 16 8 H 0.08 4.93 6.14 -2.91 -0.02 4.91 16 9 C 0.09 4.83 5.41 -20.89 -0.11 4.71 16 10 C -0.17 -8.15 8.19 22.61 0.19 -7.96 16 11 C -0.17 -6.68 11.07 66.64 0.74 -5.95 16 12 S 0.03 1.24 22.25 -56.49 -1.26 -0.02 16 13 C -0.47 -23.80 6.51 24.67 0.16 -23.64 16 14 C 0.59 29.21 7.76 86.32 0.67 29.88 16 15 O -0.60 -34.30 14.46 -4.54 -0.07 -34.36 16 16 N -0.73 -27.39 5.44 -467.47 -2.54 -29.93 16 17 C 0.10 3.13 5.32 86.38 0.46 3.59 16 18 C 0.16 3.43 3.30 29.85 0.10 3.53 16 19 H 0.12 2.55 8.05 -2.39 -0.02 2.53 16 20 O -0.55 -11.70 12.88 -148.98 -1.92 -13.62 16 21 C -0.09 -1.84 5.00 -19.87 -0.10 -1.94 16 22 C -0.12 -1.90 9.33 22.28 0.21 -1.69 16 23 C -0.08 -1.10 10.04 22.26 0.22 -0.88 16 24 C -0.15 -2.40 10.03 22.31 0.22 -2.17 16 25 C 0.08 1.59 7.30 22.37 0.16 1.76 16 26 F -0.15 -3.38 17.27 44.97 0.78 -2.60 16 27 C -0.15 -3.20 9.66 22.31 0.22 -2.99 16 28 H 0.29 15.25 6.22 -92.71 -0.58 14.68 16 29 H 0.13 5.99 6.77 -2.91 -0.02 5.97 16 30 H 0.18 5.61 8.06 -2.91 -0.02 5.59 16 31 H 0.40 13.78 7.43 -92.71 -0.69 13.09 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.39 5.82 7.39 -74.05 -0.55 5.27 16 35 H 0.15 1.63 6.62 -2.91 -0.02 1.62 16 36 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 37 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -69.68 345.81 1.20 -68.48 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: 0.10 Total: 36.04 kcal Atomic # 6 Polarization: -33.04 SS G_CDS: 3.78 Total: -29.26 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -2.27 Total: -70.16 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -1.98 Total: -47.98 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.78 Total: -2.60 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.06 Total: 45.51 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -1.26 Total: -0.02 kcal Total: -69.68 1.20 -68.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412662017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.301 kcal (2) G-P(sol) polarization free energy of solvation -69.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds