Wall clock time and date at job start Tue Mar 31 2020 19:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86799 * 119.99867 * 2 1 4 4 H 1.48498 * 109.47230 * 240.00296 * 3 2 1 5 5 H 1.48497 * 109.47155 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46961 * 119.99835 * 3 2 1 7 7 C 1.40305 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00175 * 189.78586 * 7 2 1 9 9 C 1.40545 * 120.00024 * 9.78679 * 7 2 1 10 10 C 1.44192 * 123.71386 * 23.63795 * 9 7 2 11 11 C 1.32760 * 114.42460 * 180.29131 * 10 9 7 12 12 S 1.75465 * 111.36845 * 359.73988 * 11 10 9 13 13 C 1.39539 * 123.71592 * 203.43361 * 9 7 2 14 14 C 1.46246 * 125.22710 * 359.97438 * 13 9 7 15 15 O 1.21758 * 119.99783 * 359.71390 * 14 13 9 16 16 N 1.34774 * 119.99839 * 179.72559 * 14 13 9 17 17 C 1.46501 * 119.99783 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47289 * 179.97438 * 17 16 14 19 19 H 1.09004 * 109.47069 * 304.99670 * 18 17 16 20 20 O 1.42902 * 109.47232 * 64.99110 * 18 17 16 21 21 C 1.50698 * 109.47463 * 184.99777 * 18 17 16 22 22 C 1.38243 * 119.97219 * 279.72385 * 21 18 17 23 23 C 1.38201 * 120.02354 * 179.76950 * 22 21 18 24 24 C 1.38453 * 119.97370 * 0.50112 * 23 22 21 25 25 F 1.35106 * 120.02649 * 179.77142 * 24 23 22 26 26 C 1.38456 * 119.95099 * 359.75437 * 24 23 22 27 27 C 1.38198 * 119.97348 * 359.97438 * 26 24 23 28 28 H 0.96993 * 120.00391 * 0.02562 * 1 2 3 29 29 H 1.07998 * 122.78413 * 0.03096 * 10 9 7 30 30 H 1.08010 * 124.31465 * 179.77486 * 11 10 9 31 31 H 0.96996 * 120.00572 * 359.97438 * 16 14 13 32 32 H 1.09002 * 109.47722 * 59.99310 * 17 16 14 33 33 H 1.09006 * 109.46983 * 299.99361 * 17 16 14 34 34 H 0.96701 * 113.99735 * 60.00571 * 20 18 17 35 35 H 1.07999 * 119.99284 * 0.02562 * 22 21 18 36 36 H 1.08002 * 120.01489 * 180.25765 * 23 22 21 37 37 H 1.08004 * 120.01436 * 179.97438 * 26 24 23 38 38 H 1.07998 * 119.98885 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0940 1.6965 -1.2125 5 1 1.2754 2.7464 0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0080 -1.2151 -0.0005 8 1 3.0762 -1.2219 0.1584 9 6 1.3206 -2.4233 -0.2080 10 6 0.0553 -2.5168 -0.8931 11 6 -0.4322 -3.7486 -0.9799 12 16 0.6388 -4.9148 -0.2238 13 6 1.7895 -3.6649 0.2228 14 6 3.0434 -3.8903 0.9409 15 8 3.7726 -2.9509 1.2023 16 7 3.3919 -5.1379 1.3131 17 6 4.6478 -5.3636 2.0329 18 6 4.8015 -6.8556 2.3349 19 1 3.9224 -7.2098 2.8732 20 8 4.9329 -7.5786 1.1093 21 6 6.0297 -7.0730 3.1806 22 6 7.2788 -7.1046 2.5891 23 6 8.4063 -7.2992 3.3643 24 6 8.2835 -7.4730 4.7324 25 9 9.3847 -7.6679 5.4906 26 6 7.0315 -7.4465 5.3230 27 6 5.9060 -7.2461 4.5466 28 1 -0.4850 0.8400 -0.0004 29 1 -0.4554 -1.6558 -1.2982 30 1 -1.3685 -4.0008 -1.4557 31 1 2.8110 -5.8863 1.1051 32 1 4.6366 -4.8033 2.9678 33 1 5.4838 -5.0288 1.4187 34 1 5.6961 -7.3151 0.5771 35 1 7.3741 -6.9730 1.5214 36 1 9.3824 -7.3196 2.9026 37 1 6.9346 -7.5823 6.3901 38 1 4.9293 -7.2250 5.0070 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412899033.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:18 Heat of formation + Delta-G solvation = -91.220885 kcal Electronic energy + Delta-G solvation = -24873.787956 eV Core-core repulsion = 20914.545308 eV Total energy + Delta-G solvation = -3959.242648 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.14882 -39.94484 -38.33472 -36.98934 -35.94858 -33.48749 -33.06969 -31.62834 -31.32208 -29.15520 -27.98787 -25.94370 -23.74407 -23.28859 -22.01613 -21.37806 -20.02072 -18.78569 -18.16614 -17.74264 -17.14958 -16.81810 -15.84851 -15.82782 -15.51258 -15.25165 -15.19904 -14.55537 -14.55082 -13.88777 -13.84445 -13.76344 -13.59485 -13.21309 -13.03246 -12.54604 -12.46345 -12.15836 -12.00152 -11.78483 -11.43925 -11.41316 -11.22548 -11.12760 -10.95088 -10.47749 -10.33154 -10.15797 -9.63482 -9.41790 -9.25645 -8.88487 -8.47155 -8.29688 -7.49960 -7.14301 -7.05594 -4.54064 0.79467 0.92498 2.15436 2.97468 2.98935 3.02835 3.13050 3.22434 3.63313 3.79267 3.84293 3.89765 3.99142 4.25908 4.38900 4.42684 4.55533 4.63916 4.85473 4.90696 5.03253 5.20177 5.27419 5.56473 5.64249 5.80116 5.86406 5.88689 5.92476 6.04670 6.22673 6.55964 6.64481 6.82937 7.15639 7.19273 7.24403 7.43427 7.46771 7.69367 8.34272 8.43285 8.58849 8.76551 9.55930 9.85400 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.002681 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.769293 B =10440.286763 C =11830.564485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.067 3.933 3 Si 0.926 3.074 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.378 4.378 8 H 0.111 0.889 9 C 0.141 3.859 10 C -0.100 4.100 11 C -0.206 4.206 12 S -0.048 6.048 13 C -0.430 4.430 14 C 0.600 3.400 15 O -0.566 6.566 16 N -0.746 5.746 17 C 0.104 3.896 18 C 0.138 3.862 19 H 0.115 0.885 20 O -0.548 6.548 21 C -0.120 4.120 22 C -0.080 4.080 23 C -0.150 4.150 24 C 0.096 3.904 25 F -0.141 7.141 26 C -0.151 4.151 27 C -0.077 4.077 28 H 0.289 0.711 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.394 0.606 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.375 0.625 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.726 -10.914 4.786 14.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.154 4.154 3 Si 0.749 3.251 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.408 4.408 8 H 0.129 0.871 9 C 0.130 3.870 10 C -0.132 4.132 11 C -0.340 4.340 12 S 0.207 5.793 13 C -0.549 4.549 14 C 0.397 3.603 15 O -0.449 6.449 16 N -0.401 5.401 17 C -0.021 4.021 18 C 0.079 3.921 19 H 0.133 0.867 20 O -0.354 6.354 21 C -0.121 4.121 22 C -0.098 4.098 23 C -0.169 4.169 24 C 0.077 3.923 25 F -0.120 7.120 26 C -0.170 4.170 27 C -0.095 4.095 28 H 0.100 0.900 29 H 0.163 0.837 30 H 0.155 0.845 31 H 0.228 0.772 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.223 0.777 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.485 -11.928 5.422 15.610 hybrid contribution 0.621 2.067 -0.217 2.169 sum 9.106 -9.861 5.205 14.396 Atomic orbital electron populations 1.69661 1.08072 1.30481 1.32032 1.26379 0.94945 1.02578 0.91542 0.86047 0.79952 0.78356 0.80741 1.18344 1.20119 1.18264 1.20007 0.97725 0.88815 1.34296 0.87129 1.17928 0.89532 0.91784 0.87774 1.21724 0.96392 0.96071 0.99058 1.24958 1.03349 0.97029 1.08630 1.82749 1.17743 1.13950 1.64899 1.22557 1.05056 0.95642 1.31659 1.16855 0.84658 0.81072 0.77678 1.90654 1.53910 1.41698 1.58648 1.45727 1.22574 1.09703 1.62065 1.21721 0.88726 0.93879 0.97802 1.21082 0.95028 0.91480 0.84554 0.86728 1.86647 1.52437 1.63737 1.32564 1.20543 0.95675 1.00963 0.94884 1.20777 0.91079 0.97711 1.00219 1.21109 1.00333 1.03392 0.92041 1.17754 0.82913 1.02413 0.89268 1.91503 1.52040 1.92582 1.75865 1.21150 0.91071 1.03586 1.01198 1.20912 0.98746 0.97140 0.92710 0.90027 0.83749 0.84490 0.77156 0.91274 0.91895 0.77672 0.84930 0.84551 0.84535 0.84547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.70 10.82 55.57 0.60 -18.10 16 2 C 0.07 1.63 5.39 -17.28 -0.09 1.54 16 3 Si 0.93 18.41 29.57 -169.99 -5.03 13.39 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.38 -10.12 8.52 -37.94 -0.32 -10.44 16 8 H 0.11 3.10 6.03 -52.49 -0.32 2.79 16 9 C 0.14 3.74 5.67 -106.21 -0.60 3.14 16 10 C -0.10 -2.42 9.04 -39.12 -0.35 -2.78 16 11 C -0.21 -4.45 11.07 28.86 0.32 -4.13 16 12 S -0.05 -1.03 22.25 -107.50 -2.39 -3.42 16 13 C -0.43 -10.80 6.51 -35.88 -0.23 -11.04 16 14 C 0.60 14.47 7.76 -13.04 -0.10 14.37 16 15 O -0.57 -15.24 14.45 5.14 0.07 -15.16 16 16 N -0.75 -13.98 5.50 -61.75 -0.34 -14.32 16 17 C 0.10 1.55 5.29 -4.04 -0.02 1.53 16 18 C 0.14 1.56 3.24 -27.89 -0.09 1.47 16 19 H 0.12 1.25 8.00 -51.93 -0.42 0.83 16 20 O -0.55 -6.33 13.13 -35.23 -0.46 -6.79 16 21 C -0.12 -1.21 4.97 -104.62 -0.52 -1.73 16 22 C -0.08 -0.73 9.32 -39.59 -0.37 -1.10 16 23 C -0.15 -1.39 10.03 -39.52 -0.40 -1.78 16 24 C 0.10 0.97 7.30 -39.42 -0.29 0.68 16 25 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 26 C -0.15 -1.40 10.03 -39.52 -0.40 -1.80 16 27 C -0.08 -0.72 9.67 -39.59 -0.38 -1.10 16 28 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 29 H 0.15 3.46 6.41 -52.49 -0.34 3.13 16 30 H 0.14 2.50 8.06 -52.48 -0.42 2.08 16 31 H 0.39 6.96 7.55 -40.82 -0.31 6.65 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.38 3.22 7.49 45.56 0.34 3.57 16 35 H 0.13 0.94 6.77 -52.49 -0.36 0.59 16 36 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.14 1.04 8.04 -52.49 -0.42 0.62 16 LS Contribution 347.16 15.07 5.23 5.23 Total: -1.00 -30.49 347.16 -9.19 -39.67 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -3.06 Total: 14.16 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -3.85 Total: -13.17 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.26 Total: -32.42 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.39 Total: -21.96 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.39 kcal Atomic # 16 Polarization: -1.03 SS G_CDS: -2.39 Total: -3.42 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.49 -9.19 -39.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412899033.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.547 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds