Wall clock time and date at job start Tue Mar 31 2020 19:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86799 * 119.99867 * 2 1 4 4 H 1.48498 * 109.47230 * 240.00296 * 3 2 1 5 5 H 1.48497 * 109.47155 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46961 * 119.99835 * 3 2 1 7 7 C 1.40305 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00175 * 189.78586 * 7 2 1 9 9 C 1.40545 * 120.00024 * 9.78679 * 7 2 1 10 10 C 1.44192 * 123.71386 * 23.63795 * 9 7 2 11 11 C 1.32760 * 114.42460 * 180.29131 * 10 9 7 12 12 S 1.75465 * 111.36845 * 359.73988 * 11 10 9 13 13 C 1.39539 * 123.71592 * 203.43361 * 9 7 2 14 14 C 1.46246 * 125.22710 * 359.97438 * 13 9 7 15 15 O 1.21758 * 119.99783 * 359.71390 * 14 13 9 16 16 N 1.34774 * 119.99839 * 179.72559 * 14 13 9 17 17 C 1.46501 * 119.99783 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47289 * 179.97438 * 17 16 14 19 19 H 1.09004 * 109.47069 * 304.99670 * 18 17 16 20 20 O 1.42902 * 109.47232 * 64.99110 * 18 17 16 21 21 C 1.50698 * 109.47463 * 184.99777 * 18 17 16 22 22 C 1.38243 * 119.97219 * 279.72385 * 21 18 17 23 23 C 1.38201 * 120.02354 * 179.76950 * 22 21 18 24 24 C 1.38453 * 119.97370 * 0.50112 * 23 22 21 25 25 F 1.35106 * 120.02649 * 179.77142 * 24 23 22 26 26 C 1.38456 * 119.95099 * 359.75437 * 24 23 22 27 27 C 1.38198 * 119.97348 * 359.97438 * 26 24 23 28 28 H 0.96993 * 120.00391 * 0.02562 * 1 2 3 29 29 H 1.07998 * 122.78413 * 0.03096 * 10 9 7 30 30 H 1.08010 * 124.31465 * 179.77486 * 11 10 9 31 31 H 0.96996 * 120.00572 * 359.97438 * 16 14 13 32 32 H 1.09002 * 109.47722 * 59.99310 * 17 16 14 33 33 H 1.09006 * 109.46983 * 299.99361 * 17 16 14 34 34 H 0.96701 * 113.99735 * 60.00571 * 20 18 17 35 35 H 1.07999 * 119.99284 * 0.02562 * 22 21 18 36 36 H 1.08002 * 120.01489 * 180.25765 * 23 22 21 37 37 H 1.08004 * 120.01436 * 179.97438 * 26 24 23 38 38 H 1.07998 * 119.98885 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0940 1.6965 -1.2125 5 1 1.2754 2.7464 0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0080 -1.2151 -0.0005 8 1 3.0762 -1.2219 0.1584 9 6 1.3206 -2.4233 -0.2080 10 6 0.0553 -2.5168 -0.8931 11 6 -0.4322 -3.7486 -0.9799 12 16 0.6388 -4.9148 -0.2238 13 6 1.7895 -3.6649 0.2228 14 6 3.0434 -3.8903 0.9409 15 8 3.7726 -2.9509 1.2023 16 7 3.3919 -5.1379 1.3131 17 6 4.6478 -5.3636 2.0329 18 6 4.8015 -6.8556 2.3349 19 1 3.9224 -7.2098 2.8732 20 8 4.9329 -7.5786 1.1093 21 6 6.0297 -7.0730 3.1806 22 6 7.2788 -7.1046 2.5891 23 6 8.4063 -7.2992 3.3643 24 6 8.2835 -7.4730 4.7324 25 9 9.3847 -7.6679 5.4906 26 6 7.0315 -7.4465 5.3230 27 6 5.9060 -7.2461 4.5466 28 1 -0.4850 0.8400 -0.0004 29 1 -0.4554 -1.6558 -1.2982 30 1 -1.3685 -4.0008 -1.4557 31 1 2.8110 -5.8863 1.1051 32 1 4.6366 -4.8033 2.9678 33 1 5.4838 -5.0288 1.4187 34 1 5.6961 -7.3151 0.5771 35 1 7.3741 -6.9730 1.5214 36 1 9.3824 -7.3196 2.9026 37 1 6.9346 -7.5823 6.3901 38 1 4.9293 -7.2250 5.0070 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412899033.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:17 Heat of formation + Delta-G solvation = -111.124388 kcal Electronic energy + Delta-G solvation = -24874.651037 eV Core-core repulsion = 20914.545308 eV Total energy + Delta-G solvation = -3960.105729 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.94215 -40.85691 -39.94185 -38.14388 -37.62273 -35.02632 -34.90009 -32.51950 -32.07557 -30.90986 -29.36163 -27.55963 -24.89175 -24.09008 -23.63544 -22.28854 -21.74038 -20.61764 -19.42304 -18.94035 -18.11027 -17.68162 -17.59227 -17.17062 -16.64057 -16.36261 -16.34390 -16.12269 -15.68094 -15.33233 -15.21861 -14.96226 -14.50840 -14.20493 -14.15329 -13.97764 -13.81386 -13.72668 -13.38022 -13.30174 -13.07717 -12.91088 -12.71049 -12.27886 -12.06369 -12.03623 -11.96289 -11.42538 -11.29702 -11.04467 -10.39064 -10.12195 -9.95089 -9.65006 -9.33665 -8.92533 -8.84839 -6.44395 0.02624 0.22600 0.32170 1.34185 1.36909 1.38694 1.46240 1.79934 1.98964 2.17313 2.38744 2.55387 2.63106 3.23336 3.32123 3.40934 3.62031 3.69027 3.82099 3.95086 4.07953 4.27635 4.37036 4.38271 4.59613 4.79371 4.90317 4.91506 4.95848 5.02438 5.10363 5.18719 5.29157 5.40178 5.44514 5.58614 5.71176 5.84466 5.84888 6.40367 6.58748 6.65110 6.72731 6.97446 7.74110 8.08347 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.002681 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.769293 B =10440.286763 C =11830.564485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.036 3.964 3 Si 0.989 3.011 4 H -0.256 1.256 5 H -0.251 1.251 6 H -0.270 1.270 7 C -0.418 4.418 8 H 0.085 0.915 9 C 0.112 3.888 10 C -0.130 4.130 11 C -0.192 4.192 12 S 0.011 5.989 13 C -0.467 4.467 14 C 0.591 3.409 15 O -0.604 6.604 16 N -0.730 5.730 17 C 0.102 3.898 18 C 0.157 3.843 19 H 0.123 0.877 20 O -0.557 6.557 21 C -0.130 4.130 22 C -0.083 4.083 23 C -0.154 4.154 24 C 0.080 3.920 25 F -0.148 7.148 26 C -0.155 4.155 27 C -0.081 4.081 28 H 0.301 0.699 29 H 0.141 0.859 30 H 0.176 0.824 31 H 0.402 0.598 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.388 0.612 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.317 -11.932 4.716 15.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.180 1.180 5 H -0.175 1.175 6 H -0.195 1.195 7 C -0.449 4.449 8 H 0.103 0.897 9 C 0.101 3.899 10 C -0.163 4.163 11 C -0.326 4.326 12 S 0.266 5.734 13 C -0.586 4.586 14 C 0.388 3.612 15 O -0.491 6.491 16 N -0.383 5.383 17 C -0.022 4.022 18 C 0.097 3.903 19 H 0.140 0.860 20 O -0.365 6.365 21 C -0.131 4.131 22 C -0.101 4.101 23 C -0.173 4.173 24 C 0.061 3.939 25 F -0.127 7.127 26 C -0.174 4.174 27 C -0.099 4.099 28 H 0.112 0.888 29 H 0.158 0.842 30 H 0.193 0.807 31 H 0.237 0.763 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.238 0.762 35 H 0.169 0.831 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.068 -13.011 5.349 16.217 hybrid contribution 0.752 2.228 -0.174 2.358 sum 8.820 -10.783 5.175 14.860 Atomic orbital electron populations 1.69644 1.08791 1.31973 1.31442 1.27046 0.95794 1.04846 0.90766 0.85140 0.78926 0.74982 0.80074 1.18041 1.17463 1.19467 1.19999 0.96920 0.90716 1.37250 0.89721 1.18382 0.90877 0.92429 0.88233 1.21623 0.96484 0.97178 1.00986 1.25458 1.04189 0.96239 1.06755 1.82362 1.15685 1.11628 1.63682 1.23063 1.06496 0.97151 1.31847 1.17017 0.84399 0.82176 0.77656 1.90620 1.55000 1.43302 1.60131 1.45524 1.23696 1.08080 1.61013 1.21931 0.86699 0.96809 0.96736 1.20845 0.96123 0.88503 0.84826 0.85978 1.86624 1.53427 1.63595 1.32816 1.20488 0.95390 1.02108 0.95131 1.21032 0.90718 0.97066 1.01303 1.21334 1.01204 1.02907 0.91831 1.18033 0.83089 1.03018 0.89785 1.91484 1.52404 1.92718 1.76078 1.21366 0.90708 1.03123 1.02170 1.21145 0.99622 0.96606 0.92521 0.88786 0.84194 0.80657 0.76309 0.92189 0.92172 0.76211 0.83068 0.82935 0.82901 0.82915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.47 10.82 21.89 0.24 -38.23 16 2 C 0.04 1.75 5.39 85.37 0.46 2.21 16 3 Si 0.99 38.22 29.57 68.60 2.03 40.24 16 4 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 5 H -0.25 -8.60 7.11 99.48 0.71 -7.90 16 6 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.42 -23.38 8.52 23.34 0.20 -23.19 16 8 H 0.08 5.05 6.03 -2.91 -0.02 5.04 16 9 C 0.11 6.11 5.67 -20.89 -0.12 5.99 16 10 C -0.13 -6.32 9.04 22.61 0.20 -6.12 16 11 C -0.19 -7.97 11.07 66.64 0.74 -7.23 16 12 S 0.01 0.44 22.25 -56.49 -1.26 -0.82 16 13 C -0.47 -23.74 6.51 24.67 0.16 -23.58 16 14 C 0.59 29.12 7.76 86.32 0.67 29.79 16 15 O -0.60 -33.92 14.45 -4.53 -0.07 -33.98 16 16 N -0.73 -27.16 5.50 -467.46 -2.57 -29.73 16 17 C 0.10 3.02 5.29 86.38 0.46 3.48 16 18 C 0.16 3.30 3.24 29.85 0.10 3.40 16 19 H 0.12 2.41 8.00 -2.39 -0.02 2.39 16 20 O -0.56 -11.75 13.13 -148.98 -1.96 -13.71 16 21 C -0.13 -2.43 4.97 -19.86 -0.10 -2.53 16 22 C -0.08 -1.40 9.32 22.26 0.21 -1.19 16 23 C -0.15 -2.63 10.03 22.31 0.22 -2.41 16 24 C 0.08 1.53 7.30 22.37 0.16 1.69 16 25 F -0.15 -3.08 17.27 44.97 0.78 -2.31 16 26 C -0.16 -2.66 10.03 22.31 0.22 -2.44 16 27 C -0.08 -1.39 9.67 22.26 0.22 -1.17 16 28 H 0.30 12.83 8.29 -92.71 -0.77 12.06 16 29 H 0.14 6.80 6.41 -2.91 -0.02 6.78 16 30 H 0.18 5.79 8.06 -2.91 -0.02 5.77 16 31 H 0.40 13.68 7.55 -92.71 -0.70 12.98 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 33 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.39 5.90 7.49 -74.06 -0.56 5.34 16 35 H 0.15 1.85 6.77 -2.91 -0.02 1.83 16 36 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.15 2.02 8.04 -2.91 -0.02 2.00 16 Total: -1.00 -67.84 347.16 0.88 -66.96 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: -0.11 Total: 34.86 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 3.80 Total: -23.28 kcal Atomic # 7 Polarization: -65.63 SS G_CDS: -2.33 Total: -67.96 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -2.02 Total: -47.69 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.24 kcal Atomic # 16 Polarization: 0.44 SS G_CDS: -1.26 Total: -0.82 kcal Total: -67.84 0.88 -66.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412899033.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.164 kcal (2) G-P(sol) polarization free energy of solvation -67.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds