Wall clock time and date at job start Tue Mar 31 2020 19:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39804 * 120.08836 * 18.50213 * 3 2 1 5 5 C 1.37653 * 119.92829 * 179.73997 * 4 3 2 6 6 C 1.39156 * 120.11294 * 0.49454 * 5 4 3 7 7 N 1.39550 * 119.91329 * 179.76118 * 6 5 4 8 8 C 1.34776 * 119.99653 * 326.31344 * 7 6 5 9 9 O 1.21283 * 119.99946 * 354.71261 * 8 7 6 10 10 C 1.50696 * 120.00083 * 174.72093 * 8 7 6 11 11 N 1.46898 * 109.47291 * 179.97438 * 10 8 7 12 12 C 1.47483 * 111.00291 * 189.99907 * 11 10 8 13 13 C 1.53513 * 87.99694 * 138.67481 * 12 11 10 14 14 O 1.42908 * 114.16691 * 87.65405 * 13 12 11 15 15 C 1.50702 * 114.17159 * 220.35981 * 13 12 11 16 16 H 1.07996 * 120.00127 * 0.02562 * 15 13 12 17 17 C 1.37875 * 119.99769 * 180.02562 * 15 13 12 18 18 N 1.31512 * 120.00161 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00004 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46774 * 89.99874 * 19 17 15 21 21 H 1.48496 * 109.47037 * 210.00324 * 19 17 15 22 22 H 1.48507 * 109.46698 * 330.00219 * 19 17 15 23 23 C 1.47479 * 111.00607 * 285.97422 * 11 10 8 24 24 C 1.39024 * 120.18069 * 359.48437 * 6 5 4 25 25 C 1.37872 * 120.06835 * 0.27777 * 24 6 5 26 26 Cl 1.73601 * 120.06037 * 179.97438 * 25 24 6 27 27 H 1.07998 * 120.03692 * 0.02562 * 4 3 2 28 28 H 1.07994 * 119.94582 * 180.23704 * 5 4 3 29 29 H 0.97000 * 120.00403 * 146.30101 * 7 6 5 30 30 H 1.09003 * 109.47084 * 59.99822 * 10 8 7 31 31 H 1.08997 * 109.47208 * 300.00022 * 10 8 7 32 32 H 1.08999 * 113.47781 * 253.47983 * 12 11 10 33 33 H 1.08999 * 113.47060 * 23.88036 * 12 11 10 34 34 H 0.96698 * 113.99276 * 179.97438 * 14 13 12 35 35 H 0.97005 * 120.00047 * 180.02562 * 18 17 15 36 36 H 1.09000 * 113.47296 * 336.06061 * 23 11 10 37 37 H 1.08998 * 113.47543 * 106.46443 * 23 11 10 38 38 H 1.08005 * 119.96972 * 180.25828 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2695 -1.1462 -0.3839 5 6 4.6460 -1.1402 -0.3878 6 6 5.3403 0.0019 -0.0005 7 7 6.7358 0.0017 -0.0013 8 6 7.4096 -1.1261 0.2993 9 8 6.8071 -2.1138 0.6633 10 6 8.9117 -1.1601 0.1832 11 7 9.4024 -2.4912 0.5642 12 6 10.8716 -2.4960 0.6933 13 6 10.7046 -3.3640 1.9484 14 8 10.6490 -4.7677 1.6859 15 6 11.6361 -3.0030 3.0768 16 1 12.3405 -2.1932 2.9574 17 6 11.5889 -3.7066 4.2615 18 7 10.7314 -4.6931 4.4068 19 14 12.7439 -3.2596 5.6599 20 1 12.0999 -2.2407 6.5273 21 1 13.0443 -4.4734 6.4610 22 1 14.0058 -2.7093 5.1029 23 6 9.3294 -2.6834 2.0246 24 6 4.6475 1.1450 0.3817 25 6 3.2688 1.1489 0.3837 26 17 2.4039 2.5762 0.8616 27 1 2.7319 -2.0344 -0.6814 28 1 5.1881 -2.0247 -0.6879 29 1 7.2208 0.8132 -0.2183 30 1 9.3444 -0.4103 0.8457 31 1 9.2016 -0.9464 -0.8456 32 1 11.3777 -3.0083 -0.1249 33 1 11.2925 -1.5118 0.8989 34 1 10.5442 -5.3120 2.4782 35 1 10.6979 -5.1879 5.2405 36 1 9.3388 -1.7495 2.5865 37 1 8.5278 -3.3538 2.3348 38 1 5.1899 2.0309 0.6776 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412968570.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:16 Heat of formation + Delta-G solvation = -6.837787 kcal Electronic energy + Delta-G solvation = -25077.448863 eV Core-core repulsion = 21139.741596 eV Total energy + Delta-G solvation = -3937.707267 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.91249 -40.85491 -39.72736 -37.71603 -37.64862 -36.17374 -35.79860 -34.06315 -32.16615 -32.00562 -30.60751 -28.05451 -26.62408 -25.53479 -24.24315 -23.85286 -21.54499 -20.48188 -20.24029 -19.39711 -18.84314 -18.27859 -17.08530 -17.04189 -16.61104 -16.46025 -16.12319 -15.74635 -15.50109 -15.38298 -15.29959 -15.15801 -14.74292 -14.21922 -14.01308 -13.90674 -13.84918 -13.67738 -13.50451 -13.32088 -12.99797 -12.84564 -12.61572 -12.57263 -12.51870 -12.21262 -12.16065 -11.93218 -11.45669 -11.13408 -10.89805 -10.61964 -10.04060 -10.03815 -9.62807 -9.34882 -8.21903 -6.39937 -0.56128 0.03720 0.79630 1.36900 1.44561 1.47252 1.50083 1.57101 1.79884 1.93322 2.39597 2.63637 2.71214 2.99142 3.28033 3.55001 3.64961 3.94390 4.06170 4.08806 4.13588 4.15321 4.38144 4.43316 4.49992 4.55216 4.63564 4.66646 4.96728 4.99266 5.07764 5.15924 5.25291 5.40507 5.43713 5.62708 5.78929 5.98613 6.19459 6.31966 6.42511 6.67658 7.08588 7.33691 7.58724 8.83149 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.018868 B = 0.002286 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.650677 B =12244.402185 C =12527.544240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.275 3.725 3 C -0.054 4.054 4 C -0.026 4.026 5 C -0.134 4.134 6 C 0.198 3.802 7 N -0.658 5.658 8 C 0.518 3.482 9 O -0.534 6.534 10 C -0.003 4.003 11 N -0.466 5.466 12 C 0.019 3.981 13 C 0.212 3.788 14 O -0.586 6.586 15 C -0.552 4.552 16 H 0.074 0.926 17 C 0.021 3.979 18 N -0.923 5.923 19 Si 0.969 3.031 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.264 1.264 23 C 0.001 3.999 24 C -0.130 4.130 25 C 0.026 3.974 26 Cl -0.050 7.050 27 H 0.162 0.838 28 H 0.138 0.862 29 H 0.436 0.564 30 H 0.096 0.904 31 H 0.141 0.859 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.382 0.618 35 H 0.272 0.728 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.403 16.338 -10.052 20.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.040 4.040 3 C -0.059 4.059 4 C -0.047 4.047 5 C -0.154 4.154 6 C 0.101 3.899 7 N -0.306 5.306 8 C 0.307 3.693 9 O -0.408 6.408 10 C -0.135 4.135 11 N -0.189 5.189 12 C -0.109 4.109 13 C 0.170 3.830 14 O -0.398 6.398 15 C -0.590 4.590 16 H 0.093 0.907 17 C -0.178 4.178 18 N -0.565 5.565 19 Si 0.794 3.206 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.188 1.188 23 C -0.129 4.129 24 C -0.151 4.151 25 C -0.004 4.004 26 Cl -0.021 7.021 27 H 0.179 0.821 28 H 0.156 0.844 29 H 0.277 0.723 30 H 0.114 0.886 31 H 0.159 0.841 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.237 0.763 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.920 15.362 -10.734 21.690 hybrid contribution 1.030 0.662 1.956 2.308 sum -9.890 16.024 -8.778 20.775 Atomic orbital electron populations 1.81249 1.12835 1.08174 1.09894 1.25542 0.92492 0.93049 0.92935 1.15829 0.83968 0.95503 1.10595 1.21157 0.93214 0.96344 0.93990 1.21250 0.94001 0.99191 1.00968 1.17866 0.83715 0.94260 0.94085 1.43412 1.03757 1.14850 1.68585 1.21095 0.90807 0.82171 0.75236 1.90770 1.70437 1.35557 1.43996 1.22805 0.90361 0.94097 1.06187 1.68825 1.09307 1.24630 1.16152 1.24039 0.88919 0.99833 0.98138 1.19865 0.91178 0.79739 0.92174 1.86010 1.96006 1.18735 1.39014 1.21881 1.20791 1.17847 0.98453 0.90743 1.25887 0.96412 0.94378 1.01122 1.69402 1.37059 1.22219 1.27776 0.85387 0.79149 0.77661 0.78403 1.19940 1.21131 1.18803 1.24368 1.00735 0.99615 0.88197 1.20813 0.91095 1.00162 1.03011 1.20639 0.92325 0.87638 0.99770 1.98420 1.76486 1.37244 1.89905 0.82069 0.84435 0.72327 0.88631 0.84101 0.90530 0.88737 0.76328 0.91782 0.92124 0.94670 0.80605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -11.37 18.54 19.01 0.35 -11.02 16 2 C 0.27 5.82 14.38 88.33 1.27 7.09 16 3 C -0.05 -0.94 5.74 -21.25 -0.12 -1.06 16 4 C -0.03 -0.43 9.75 22.51 0.22 -0.21 16 5 C -0.13 -2.55 8.63 22.35 0.19 -2.35 16 6 C 0.20 3.22 6.27 38.32 0.24 3.46 16 7 N -0.66 -9.67 5.32 -303.47 -1.61 -11.29 16 8 C 0.52 12.78 7.40 87.66 0.65 13.43 16 9 O -0.53 -18.76 13.45 -3.04 -0.04 -18.80 16 10 C 0.00 -0.08 5.32 85.56 0.45 0.38 16 11 N -0.47 -17.33 6.06 -932.18 -5.65 -22.98 16 12 C 0.02 0.72 7.12 83.58 0.60 1.32 16 13 C 0.21 10.32 1.57 -11.16 -0.02 10.30 16 14 O -0.59 -32.18 13.54 -148.98 -2.02 -34.20 16 15 C -0.55 -27.90 8.69 25.60 0.22 -27.68 16 16 H 0.07 3.54 7.81 -2.91 -0.02 3.52 16 17 C 0.02 1.09 5.40 84.65 0.46 1.55 16 18 N -0.92 -49.87 11.02 21.45 0.24 -49.63 16 19 Si 0.97 40.18 29.54 68.60 2.03 42.21 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.29 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 23 C 0.00 0.02 6.14 83.62 0.51 0.54 16 24 C -0.13 -1.65 9.72 22.37 0.22 -1.43 16 25 C 0.03 0.41 6.34 22.58 0.14 0.55 16 26 Cl -0.05 -0.80 28.02 -2.72 -0.08 -0.87 16 27 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 28 H 0.14 3.18 6.42 -2.91 -0.02 3.16 16 29 H 0.44 2.55 8.81 -92.71 -0.82 1.73 16 30 H 0.10 1.86 7.56 -2.39 -0.02 1.84 16 31 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.09 2.99 7.72 -2.39 -0.02 2.97 16 34 H 0.38 21.83 6.33 -74.06 -0.47 21.36 16 35 H 0.27 13.96 8.31 -92.70 -0.77 13.19 16 36 H 0.06 2.58 7.66 -2.39 -0.02 2.56 16 37 H 0.03 1.83 8.13 -2.39 -0.02 1.81 16 38 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -69.62 350.42 -1.89 -71.51 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -0.14 Total: 29.19 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 5.03 Total: 5.88 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -6.68 Total: -94.91 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -2.06 Total: -53.01 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.87 kcal Total: -69.62 -1.89 -71.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412968570.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.671 kcal (2) G-P(sol) polarization free energy of solvation -69.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds