Wall clock time and date at job start Tue Mar 31 2020 19:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39817 * 120.08954 * 120.58460 * 3 2 1 5 5 C 1.37645 * 119.93121 * 179.68145 * 4 3 2 6 6 C 1.39157 * 120.11414 * 0.56687 * 5 4 3 7 7 N 1.39547 * 119.91230 * 179.72647 * 6 5 4 8 8 C 1.34781 * 119.99453 * 326.32876 * 7 6 5 9 9 O 1.21581 * 119.99890 * 354.68053 * 8 7 6 10 10 N 1.34776 * 119.99610 * 174.67910 * 8 7 6 11 11 C 1.47018 * 125.64938 * 0.04400 * 10 8 7 12 12 C 1.54326 * 107.27201 * 181.02066 * 11 10 8 13 13 C 1.55161 * 102.93982 * 22.19272 * 12 11 10 14 14 O 1.42906 * 111.00559 * 82.56946 * 13 12 11 15 15 C 1.50700 * 111.03362 * 206.41017 * 13 12 11 16 16 H 1.07993 * 120.00018 * 356.78973 * 15 13 12 17 17 C 1.37881 * 119.99883 * 176.79718 * 15 13 12 18 18 N 1.31517 * 119.99634 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 120.00192 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46617 * 60.00078 * 19 17 15 21 21 H 1.48494 * 109.47323 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47202 * 300.00270 * 19 17 15 23 23 C 1.47424 * 125.64487 * 179.97438 * 10 8 7 24 24 C 1.39029 * 120.18011 * 359.45324 * 6 5 4 25 25 C 1.37865 * 120.06767 * 0.24650 * 24 6 5 26 26 Cl 1.73604 * 120.05784 * 180.02562 * 25 24 6 27 27 H 1.08001 * 120.03252 * 359.97058 * 4 3 2 28 28 H 1.08000 * 119.94662 * 180.29401 * 5 4 3 29 29 H 0.96999 * 120.00074 * 146.32746 * 7 6 5 30 30 H 1.09001 * 109.88271 * 300.43610 * 11 10 8 31 31 H 1.08997 * 109.88639 * 61.59973 * 11 10 8 32 32 H 1.08993 * 110.72107 * 263.82963 * 12 11 10 33 33 H 1.09003 * 110.71714 * 140.54783 * 12 11 10 34 34 H 0.96691 * 113.99469 * 186.34901 * 14 13 12 35 35 H 0.97001 * 119.99474 * 179.97438 * 18 17 15 36 36 H 1.08998 * 110.36616 * 37.07554 * 23 10 8 37 37 H 1.09000 * 110.46251 * 274.79499 * 23 10 8 38 38 H 1.07999 * 119.96499 * 180.27516 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 0.6165 -1.0415 5 6 4.6451 0.6209 -1.0348 6 6 5.3403 0.0033 0.0004 7 7 6.7358 0.0053 0.0000 8 6 7.4093 -0.0511 -1.1661 9 8 6.8051 -0.2011 -2.2105 10 7 8.7525 0.0589 -1.1744 11 6 9.6046 0.2418 0.0096 12 6 11.0627 0.3413 -0.4861 13 6 10.8975 0.7758 -1.9664 14 8 10.7101 2.1889 -2.0677 15 6 12.0737 0.3289 -2.7958 16 1 12.9065 -0.1727 -2.3256 17 6 12.0867 0.5608 -4.1549 18 7 11.0724 1.1714 -4.7275 19 14 13.5450 0.0075 -5.1829 20 1 13.7009 -1.4649 -5.0686 21 1 13.3154 0.3716 -6.6041 22 1 14.7776 0.6754 -4.6932 23 6 9.6108 0.0142 -2.3722 24 6 4.6484 -0.6109 1.0382 25 6 3.2697 -0.6144 1.0422 26 17 2.4059 -1.3808 2.3385 27 1 2.7305 1.0923 -1.8479 28 1 5.1866 1.1007 -1.8367 29 1 7.2210 0.0473 0.8388 30 1 9.3262 1.1590 0.5286 31 1 9.4980 -0.6120 0.6786 32 1 11.5589 -0.6270 -0.4215 33 1 11.6112 1.0955 0.0782 34 1 10.5060 2.4954 -2.9617 35 1 11.0817 1.3349 -5.6836 36 1 9.1218 0.5142 -3.2082 37 1 9.8468 -1.0174 -2.6336 38 1 5.1914 -1.0853 1.8422 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414386619.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:03 Heat of formation + Delta-G solvation = -19.124265 kcal Electronic energy + Delta-G solvation = -25512.108828 eV Core-core repulsion = 21573.868780 eV Total energy + Delta-G solvation = -3938.240049 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.80210 -39.33679 -37.74536 -36.83149 -36.57850 -34.72207 -34.38042 -32.28946 -31.26931 -30.84871 -29.68136 -27.94565 -25.47543 -23.90033 -23.35947 -22.58021 -19.94550 -19.80690 -19.32039 -18.33869 -17.41126 -17.19728 -16.17425 -15.48463 -15.26931 -14.95536 -14.86700 -14.63481 -14.47893 -14.34639 -13.91333 -13.64072 -13.20393 -13.06828 -12.98421 -12.94301 -12.57171 -12.32774 -12.14665 -11.78249 -11.73133 -11.58450 -11.36079 -11.10732 -10.96105 -10.76656 -10.57229 -10.44799 -10.29658 -9.94484 -9.52151 -9.21600 -8.78095 -8.55212 -8.41248 -7.93936 -6.37323 -4.46726 0.37041 0.86629 1.60873 2.45974 2.55549 2.70613 3.16825 3.23343 3.24603 3.29906 3.59744 3.63215 4.01586 4.20364 4.39843 4.78575 4.89087 4.95144 4.99556 5.20842 5.30592 5.45391 5.48718 5.59955 5.81498 5.84538 5.86764 6.01240 6.11296 6.34528 6.53998 6.61272 6.67901 6.70325 6.98548 7.15321 7.27203 7.29373 7.65140 7.91215 8.10693 8.56151 8.66687 9.21248 9.30535 10.70168 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.026421 B = 0.002405 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.520966 B =11639.116103 C =12237.576486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.259 3.741 3 C -0.054 4.054 4 C -0.033 4.033 5 C -0.121 4.121 6 C 0.230 3.770 7 N -0.687 5.687 8 C 0.713 3.287 9 O -0.573 6.573 10 N -0.618 5.618 11 C 0.099 3.901 12 C -0.116 4.116 13 C 0.250 3.750 14 O -0.582 6.582 15 C -0.539 4.539 16 H 0.067 0.933 17 C 0.072 3.928 18 N -0.893 5.893 19 Si 0.905 3.095 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.109 3.891 24 C -0.151 4.151 25 C 0.031 3.969 26 Cl -0.054 7.054 27 H 0.146 0.854 28 H 0.157 0.843 29 H 0.410 0.590 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.384 0.616 35 H 0.272 0.728 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.225 -2.004 11.992 15.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.056 4.056 3 C -0.060 4.060 4 C -0.054 4.054 5 C -0.142 4.142 6 C 0.130 3.870 7 N -0.333 5.333 8 C 0.416 3.584 9 O -0.450 6.450 10 N -0.353 5.353 11 C -0.024 4.024 12 C -0.154 4.154 13 C 0.209 3.791 14 O -0.392 6.392 15 C -0.577 4.577 16 H 0.085 0.915 17 C -0.131 4.131 18 N -0.531 5.531 19 Si 0.732 3.268 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.200 1.200 23 C -0.012 4.012 24 C -0.173 4.173 25 C 0.001 3.999 26 Cl -0.025 7.025 27 H 0.163 0.837 28 H 0.174 0.826 29 H 0.246 0.754 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.234 0.766 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.376 -2.143 11.751 16.496 hybrid contribution 1.306 -0.441 -0.613 1.509 sum -10.070 -2.584 11.139 15.237 Atomic orbital electron populations 1.81220 1.11802 1.08432 1.07449 1.25379 0.92346 0.93887 0.93970 1.15759 0.84712 1.07511 0.97994 1.21047 0.93586 0.95174 0.95620 1.21361 0.93383 0.99501 0.99920 1.17545 0.82630 0.92426 0.94376 1.42807 1.03929 1.76941 1.09671 1.15486 0.81270 0.78607 0.83068 1.90937 1.66879 1.56760 1.30394 1.48028 1.02855 1.73089 1.11306 1.22061 0.92918 0.99503 0.87942 1.22606 0.92878 1.01717 0.98199 1.19616 0.90304 0.79440 0.89709 1.86094 1.93728 1.23447 1.35892 1.21408 1.04185 1.39601 0.92556 0.91486 1.25073 0.96306 0.93829 0.97924 1.69633 1.30193 1.41094 1.12223 0.86444 0.82288 0.79209 0.78880 1.19996 1.21047 1.19968 1.23333 0.90996 1.01228 0.85690 1.20585 0.91561 1.03412 1.01768 1.20496 0.91759 0.97567 0.90123 1.98404 1.76516 1.79629 1.47916 0.83665 0.82582 0.75374 0.92115 0.92700 0.90240 0.90503 0.76552 0.91803 0.89490 0.91949 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.55 18.54 41.84 0.78 -4.77 16 2 C 0.26 3.01 14.38 -22.47 -0.32 2.68 16 3 C -0.05 -0.55 5.74 -106.76 -0.61 -1.17 16 4 C -0.03 -0.32 9.75 -39.21 -0.38 -0.70 16 5 C -0.12 -1.41 8.62 -39.46 -0.34 -1.75 16 6 C 0.23 2.57 6.27 -83.71 -0.52 2.04 16 7 N -0.69 -8.25 5.28 -14.21 -0.08 -8.33 16 8 C 0.71 12.03 8.22 -86.91 -0.71 11.32 16 9 O -0.57 -11.54 14.29 5.29 0.08 -11.47 16 10 N -0.62 -10.89 3.33 -176.23 -0.59 -11.48 16 11 C 0.10 1.43 6.16 -3.07 -0.02 1.41 16 12 C -0.12 -2.01 6.13 -24.89 -0.15 -2.17 16 13 C 0.25 5.49 0.87 -89.61 -0.08 5.41 16 14 O -0.58 -13.67 13.15 -35.23 -0.46 -14.13 16 15 C -0.54 -13.06 8.26 -34.44 -0.28 -13.34 16 16 H 0.07 1.59 7.78 -52.49 -0.41 1.18 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 18 N -0.89 -22.45 10.72 55.43 0.59 -21.86 16 19 Si 0.90 19.37 29.54 -169.99 -5.02 14.35 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 C 0.11 2.35 5.50 -2.52 -0.01 2.34 16 24 C -0.15 -1.38 9.72 -39.42 -0.38 -1.76 16 25 C 0.03 0.30 6.34 -39.10 -0.25 0.05 16 26 Cl -0.05 -0.51 28.02 -51.86 -1.45 -1.96 16 27 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.16 2.13 6.42 -52.49 -0.34 1.79 16 29 H 0.41 3.70 7.81 -40.82 -0.32 3.38 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.38 9.37 7.32 45.56 0.33 9.70 16 35 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 36 H 0.09 2.13 7.47 -51.93 -0.39 1.74 16 37 H 0.06 1.40 8.03 -51.93 -0.42 0.98 16 38 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 347.14 15.07 5.23 5.23 Total: -1.00 -28.06 347.14 -8.29 -36.35 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -3.20 Total: 12.02 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -4.17 Total: 6.05 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.71 Total: -46.44 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.39 Total: -25.60 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.45 Total: -1.96 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.06 -8.29 -36.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414386619.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.227 kcal (2) G-P(sol) polarization free energy of solvation -28.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds