Wall clock time and date at job start Tue Mar 31 2020 19:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39817 * 120.08954 * 120.58460 * 3 2 1 5 5 C 1.37645 * 119.93121 * 179.68145 * 4 3 2 6 6 C 1.39157 * 120.11414 * 0.56687 * 5 4 3 7 7 N 1.39547 * 119.91230 * 179.72647 * 6 5 4 8 8 C 1.34781 * 119.99453 * 326.32876 * 7 6 5 9 9 O 1.21581 * 119.99890 * 354.68053 * 8 7 6 10 10 N 1.34776 * 119.99610 * 174.67910 * 8 7 6 11 11 C 1.47018 * 125.64938 * 0.04400 * 10 8 7 12 12 C 1.54326 * 107.27201 * 181.02066 * 11 10 8 13 13 C 1.55161 * 102.93982 * 22.19272 * 12 11 10 14 14 O 1.42906 * 111.00559 * 82.56946 * 13 12 11 15 15 C 1.50700 * 111.03362 * 206.41017 * 13 12 11 16 16 H 1.07993 * 120.00018 * 356.78973 * 15 13 12 17 17 C 1.37881 * 119.99883 * 176.79718 * 15 13 12 18 18 N 1.31517 * 119.99634 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 120.00192 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46617 * 60.00078 * 19 17 15 21 21 H 1.48494 * 109.47323 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47202 * 300.00270 * 19 17 15 23 23 C 1.47424 * 125.64487 * 179.97438 * 10 8 7 24 24 C 1.39029 * 120.18011 * 359.45324 * 6 5 4 25 25 C 1.37865 * 120.06767 * 0.24650 * 24 6 5 26 26 Cl 1.73604 * 120.05784 * 180.02562 * 25 24 6 27 27 H 1.08001 * 120.03252 * 359.97058 * 4 3 2 28 28 H 1.08000 * 119.94662 * 180.29401 * 5 4 3 29 29 H 0.96999 * 120.00074 * 146.32746 * 7 6 5 30 30 H 1.09001 * 109.88271 * 300.43610 * 11 10 8 31 31 H 1.08997 * 109.88639 * 61.59973 * 11 10 8 32 32 H 1.08993 * 110.72107 * 263.82963 * 12 11 10 33 33 H 1.09003 * 110.71714 * 140.54783 * 12 11 10 34 34 H 0.96691 * 113.99469 * 186.34901 * 14 13 12 35 35 H 0.97001 * 119.99474 * 179.97438 * 18 17 15 36 36 H 1.08998 * 110.36616 * 37.07554 * 23 10 8 37 37 H 1.09000 * 110.46251 * 274.79499 * 23 10 8 38 38 H 1.07999 * 119.96499 * 180.27516 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 0.6165 -1.0415 5 6 4.6451 0.6209 -1.0348 6 6 5.3403 0.0033 0.0004 7 7 6.7358 0.0053 0.0000 8 6 7.4093 -0.0511 -1.1661 9 8 6.8051 -0.2011 -2.2105 10 7 8.7525 0.0589 -1.1744 11 6 9.6046 0.2418 0.0096 12 6 11.0627 0.3413 -0.4861 13 6 10.8975 0.7758 -1.9664 14 8 10.7101 2.1889 -2.0677 15 6 12.0737 0.3289 -2.7958 16 1 12.9065 -0.1727 -2.3256 17 6 12.0867 0.5608 -4.1549 18 7 11.0724 1.1714 -4.7275 19 14 13.5450 0.0075 -5.1829 20 1 13.7009 -1.4649 -5.0686 21 1 13.3154 0.3716 -6.6041 22 1 14.7776 0.6754 -4.6932 23 6 9.6108 0.0142 -2.3722 24 6 4.6484 -0.6109 1.0382 25 6 3.2697 -0.6144 1.0422 26 17 2.4059 -1.3808 2.3385 27 1 2.7305 1.0923 -1.8479 28 1 5.1866 1.1007 -1.8367 29 1 7.2210 0.0473 0.8388 30 1 9.3262 1.1590 0.5286 31 1 9.4980 -0.6120 0.6786 32 1 11.5589 -0.6270 -0.4215 33 1 11.6112 1.0955 0.0782 34 1 10.5060 2.4954 -2.9617 35 1 11.0817 1.3349 -5.6836 36 1 9.1218 0.5142 -3.2082 37 1 9.8468 -1.0174 -2.6336 38 1 5.1914 -1.0853 1.8422 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414386619.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:02 Heat of formation + Delta-G solvation = -37.072281 kcal Electronic energy + Delta-G solvation = -25512.887113 eV Core-core repulsion = 21573.868780 eV Total energy + Delta-G solvation = -3939.018333 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.92029 -40.43925 -39.12657 -37.66943 -37.61020 -36.10379 -35.70172 -34.16036 -32.17974 -32.04592 -30.82425 -29.49879 -27.10647 -25.10741 -24.19782 -23.81118 -21.46104 -21.10627 -20.18790 -19.53595 -18.96386 -18.52797 -17.23900 -17.02421 -16.62398 -16.25996 -16.17459 -15.85587 -15.47180 -15.24253 -15.10862 -14.71703 -14.67356 -14.58563 -14.06026 -13.94371 -13.75076 -13.51606 -13.42803 -13.32932 -12.95614 -12.79558 -12.58512 -12.48971 -12.29107 -12.23889 -12.12779 -12.04402 -11.50936 -11.26834 -11.16628 -10.61767 -10.29001 -10.01613 -9.61201 -9.17888 -8.22556 -6.38086 -0.50767 0.07483 0.80272 1.42191 1.46753 1.48948 1.53589 1.54552 1.69173 2.11873 2.40551 2.68575 2.72024 2.90468 3.04456 3.64629 3.83004 3.94909 4.03832 4.11952 4.16921 4.24236 4.38654 4.56267 4.66927 4.69158 4.78491 4.99944 5.06649 5.10163 5.13722 5.20281 5.29534 5.41882 5.49700 5.66831 5.79869 5.99422 6.12722 6.35397 6.68018 6.88894 7.32943 7.38676 7.40374 8.82555 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.026421 B = 0.002405 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.520966 B =11639.116103 C =12237.576486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.277 3.723 3 C -0.054 4.054 4 C -0.023 4.023 5 C -0.135 4.135 6 C 0.216 3.784 7 N -0.666 5.666 8 C 0.713 3.287 9 O -0.613 6.613 10 N -0.623 5.623 11 C 0.101 3.899 12 C -0.112 4.112 13 C 0.232 3.768 14 O -0.587 6.587 15 C -0.555 4.555 16 H 0.069 0.931 17 C 0.028 3.972 18 N -0.914 5.914 19 Si 0.959 3.041 20 H -0.270 1.270 21 H -0.288 1.288 22 H -0.271 1.271 23 C 0.125 3.875 24 C -0.130 4.130 25 C 0.031 3.969 26 Cl -0.047 7.047 27 H 0.163 0.837 28 H 0.132 0.868 29 H 0.427 0.573 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.374 0.626 35 H 0.269 0.731 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.127 -2.830 14.428 17.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.038 4.038 3 C -0.060 4.060 4 C -0.044 4.044 5 C -0.156 4.156 6 C 0.118 3.882 7 N -0.315 5.315 8 C 0.415 3.585 9 O -0.493 6.493 10 N -0.358 5.358 11 C -0.021 4.021 12 C -0.150 4.150 13 C 0.191 3.809 14 O -0.396 6.396 15 C -0.593 4.593 16 H 0.087 0.913 17 C -0.173 4.173 18 N -0.554 5.554 19 Si 0.785 3.215 20 H -0.195 1.195 21 H -0.214 1.214 22 H -0.196 1.196 23 C 0.002 3.998 24 C -0.151 4.151 25 C 0.001 3.999 26 Cl -0.018 7.018 27 H 0.180 0.820 28 H 0.150 0.850 29 H 0.267 0.733 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.224 0.776 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -11.288 -2.970 14.270 18.436 hybrid contribution 1.227 -0.184 -1.340 1.826 sum -10.061 -3.154 12.931 16.685 Atomic orbital electron populations 1.81242 1.12769 1.09621 1.08555 1.25484 0.92404 0.92913 0.92989 1.15784 0.83995 1.07811 0.98398 1.21117 0.92862 0.94532 0.95853 1.21242 0.94092 1.00391 0.99847 1.17661 0.82112 0.93355 0.95108 1.42413 1.04194 1.76119 1.08754 1.15581 0.80922 0.78188 0.83795 1.90914 1.67639 1.58357 1.32403 1.47885 1.03335 1.73604 1.11010 1.22254 0.90290 1.02470 0.87059 1.22607 0.95294 1.02243 0.94851 1.19864 0.89694 0.78530 0.92789 1.86085 1.93729 1.24616 1.35127 1.21787 1.05039 1.39363 0.93125 0.91318 1.25768 0.98320 0.94122 0.99101 1.69752 1.31485 1.42047 1.12075 0.85583 0.79740 0.78883 0.77276 1.19549 1.21369 1.19629 1.22770 0.91409 0.99463 0.86193 1.20719 0.91160 1.01908 1.01362 1.20562 0.92069 0.97277 0.90038 1.98416 1.76424 1.79454 1.47525 0.81979 0.84981 0.73267 0.90183 0.88289 0.89220 0.89688 0.77634 0.92166 0.93479 0.93660 0.80624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -11.53 18.54 19.00 0.35 -11.18 16 2 C 0.28 6.02 14.38 88.33 1.27 7.29 16 3 C -0.05 -1.01 5.74 -21.25 -0.12 -1.13 16 4 C -0.02 -0.41 9.75 22.51 0.22 -0.19 16 5 C -0.13 -3.06 8.62 22.35 0.19 -2.86 16 6 C 0.22 4.39 6.27 38.32 0.24 4.63 16 7 N -0.67 -14.47 5.28 -317.14 -1.67 -16.14 16 8 C 0.71 23.52 8.22 179.05 1.47 24.99 16 9 O -0.61 -25.27 14.29 -3.97 -0.06 -25.32 16 10 N -0.62 -21.41 3.33 -829.73 -2.76 -24.17 16 11 C 0.10 2.60 6.16 86.73 0.53 3.14 16 12 C -0.11 -3.66 6.13 31.78 0.19 -3.47 16 13 C 0.23 10.21 0.87 -10.14 -0.01 10.20 16 14 O -0.59 -27.98 13.15 -148.98 -1.96 -29.94 16 15 C -0.55 -27.04 8.26 25.60 0.21 -26.83 16 16 H 0.07 3.23 7.78 -2.91 -0.02 3.21 16 17 C 0.03 1.39 5.30 84.66 0.45 1.84 16 18 N -0.91 -47.53 10.72 21.45 0.23 -47.30 16 19 Si 0.96 40.03 29.54 68.60 2.03 42.06 16 20 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 21 H -0.29 -12.05 7.11 99.48 0.71 -11.35 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 C 0.13 5.52 5.50 86.86 0.48 6.00 16 24 C -0.13 -1.95 9.72 22.37 0.22 -1.73 16 25 C 0.03 0.52 6.34 22.58 0.14 0.66 16 26 Cl -0.05 -0.78 28.02 -2.72 -0.08 -0.86 16 27 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 28 H 0.13 3.73 6.42 -2.91 -0.02 3.71 16 29 H 0.43 6.08 7.81 -92.71 -0.72 5.35 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.09 2.72 8.03 -2.39 -0.02 2.70 16 33 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.37 19.02 7.32 -74.06 -0.54 18.48 16 35 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 36 H 0.05 2.43 7.47 -2.39 -0.02 2.41 16 37 H 0.05 2.10 8.03 -2.39 -0.02 2.08 16 38 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -63.08 347.14 1.45 -61.63 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: -0.12 Total: 28.67 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 5.49 Total: 22.54 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -3.85 Total: -98.78 kcal Atomic # 8 Polarization: -53.25 SS G_CDS: -2.02 Total: -55.26 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal Total: -63.08 1.45 -61.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414386619.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.555 kcal (2) G-P(sol) polarization free energy of solvation -63.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds