Wall clock time and date at job start Tue Mar 31 2020 18:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00018 * 2 1 4 4 H 1.48502 * 109.46957 * 269.99810 * 3 2 1 5 5 H 1.48494 * 109.47055 * 29.99708 * 3 2 1 6 6 H 1.48499 * 109.47324 * 149.99884 * 3 2 1 7 7 C 1.37879 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99746 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99772 * 0.02562 * 7 2 1 10 10 O 1.42904 * 110.64485 * 59.29742 * 9 7 2 11 11 C 1.55157 * 110.71980 * 182.43657 * 9 7 2 12 12 C 1.55392 * 101.36498 * 153.94726 * 11 9 7 13 13 N 1.47421 * 104.87493 * 323.01752 * 12 11 9 14 14 C 1.34777 * 125.64818 * 204.16891 * 13 12 11 15 15 O 1.21689 * 120.00072 * 356.67357 * 14 13 12 16 16 C 1.46753 * 119.99931 * 176.67281 * 14 13 12 17 17 C 1.39972 * 120.85946 * 312.70466 * 16 14 13 18 18 N 1.31623 * 119.28776 * 179.97438 * 17 16 14 19 19 C 1.33669 * 122.37623 * 359.97438 * 18 17 16 20 20 S 1.71462 * 128.66183 * 179.97438 * 19 18 17 21 21 C 1.75589 * 91.30752 * 180.02562 * 20 19 18 22 22 C 1.31031 * 109.49510 * 359.97438 * 21 20 19 23 23 N 1.35129 * 121.39705 * 359.97438 * 19 18 17 24 24 C 1.36382 * 119.26243 * 359.73732 * 23 19 18 25 25 O 1.21879 * 120.30234 * 180.25032 * 24 23 19 26 26 C 1.47020 * 108.70503 * 24.13169 * 13 12 11 27 27 H 0.97003 * 120.00253 * 0.02562 * 1 2 3 28 28 H 0.96697 * 113.99919 * 300.70212 * 10 9 7 29 29 H 1.08998 * 111.00978 * 272.11840 * 11 9 7 30 30 H 1.09003 * 111.00277 * 35.97540 * 11 9 7 31 31 H 1.09006 * 110.34480 * 204.16904 * 12 11 9 32 32 H 1.08996 * 110.44358 * 81.92431 * 12 11 9 33 33 H 1.07997 * 120.35973 * 359.97438 * 17 16 14 34 34 H 1.07994 * 125.25351 * 180.02562 * 21 20 19 35 35 H 1.08007 * 122.31306 * 180.02562 * 22 21 20 36 36 H 1.09000 * 109.88498 * 239.52601 * 26 13 12 37 37 H 1.09004 * 109.88185 * 118.35461 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4083 -2.5943 -1.1496 11 6 2.2322 -3.6994 0.0629 12 6 1.3419 -4.7887 0.7229 13 7 0.5225 -4.0612 1.7092 14 6 -0.0441 -4.5976 2.8081 15 8 0.0522 -5.7919 3.0211 16 6 -0.7771 -3.7414 3.7479 17 6 -0.2303 -2.5328 4.1945 18 7 -0.9149 -1.7886 5.0371 19 6 -2.1225 -2.1434 5.4873 20 16 -3.1476 -1.3064 6.5775 21 6 -4.3625 -2.5695 6.4679 22 6 -3.9461 -3.5071 5.6528 23 7 -2.7090 -3.2962 5.0961 24 6 -2.0566 -4.1119 4.2191 25 8 -2.5699 -5.1539 3.8501 26 6 0.4265 -2.6536 1.2959 27 1 -0.4851 0.8400 -0.0004 28 1 -0.2486 -1.8877 -1.2154 29 1 2.5462 -3.9998 -0.9367 30 1 3.0942 -3.4673 0.6883 31 1 1.9618 -5.5343 1.2208 32 1 0.7048 -5.2633 -0.0234 33 1 0.7429 -2.2142 3.8514 34 1 -5.3074 -2.5726 6.9907 35 1 -4.5354 -4.3854 5.4339 36 1 0.8356 -2.0099 2.0746 37 1 -0.6148 -2.3932 1.1058 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001418178977.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:30 Heat of formation + Delta-G solvation = -26.363059 kcal Electronic energy + Delta-G solvation = -26940.654567 eV Core-core repulsion = 23004.144327 eV Total energy + Delta-G solvation = -3936.510240 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.54501 -39.46220 -37.96228 -37.32442 -36.81394 -34.15799 -32.27091 -31.77166 -31.43563 -29.74783 -27.83254 -26.76671 -25.09998 -24.43980 -23.22327 -22.03435 -19.74976 -19.32413 -19.29792 -18.85223 -17.50499 -17.10322 -16.92576 -16.23470 -15.85242 -15.56632 -14.96381 -14.79194 -14.49405 -14.34459 -14.11737 -13.68520 -13.59354 -13.00012 -12.90993 -12.85068 -12.52365 -12.15528 -11.94014 -11.64457 -11.50868 -11.09793 -10.80009 -10.63224 -10.58442 -10.54297 -10.51493 -10.27457 -10.18213 -9.71290 -9.41103 -9.35105 -8.73516 -8.34862 -7.96548 -7.76121 -6.35779 -4.44554 -0.19757 0.29669 1.00712 1.03445 1.76527 1.90638 2.99640 3.16590 3.24789 3.27237 3.44405 3.78781 3.95987 4.13030 4.22179 4.64939 4.70422 4.88308 4.91796 5.07136 5.32403 5.49884 5.64006 5.77305 5.87272 5.99330 6.02786 6.12513 6.27513 6.48359 6.67755 6.77516 6.98877 7.09211 7.28023 7.32809 7.59591 7.66616 7.93398 8.22309 8.58784 8.74441 9.24895 9.36241 10.71568 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.004506 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.849930 B = 6211.859585 C = 7867.748634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.068 0.932 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.118 4.118 12 C 0.112 3.888 13 N -0.607 5.607 14 C 0.597 3.403 15 O -0.543 6.543 16 C -0.312 4.312 17 C 0.237 3.763 18 N -0.513 5.513 19 C 0.275 3.725 20 S 0.266 5.734 21 C -0.249 4.249 22 C 0.071 3.929 23 N -0.457 5.457 24 C 0.547 3.453 25 O -0.497 6.497 26 C 0.091 3.909 27 H 0.270 0.730 28 H 0.383 0.617 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.189 0.811 34 H 0.204 0.796 35 H 0.197 0.803 36 H 0.067 0.933 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.072 0.659 14.147 16.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.156 4.156 12 C -0.010 4.010 13 N -0.340 5.340 14 C 0.384 3.616 15 O -0.422 6.422 16 C -0.327 4.327 17 C 0.085 3.915 18 N -0.241 5.241 19 C -0.089 4.089 20 S 0.518 5.482 21 C -0.386 4.386 22 C -0.056 4.056 23 N -0.167 5.167 24 C 0.348 3.652 25 O -0.371 6.371 26 C -0.031 4.031 27 H 0.080 0.920 28 H 0.234 0.766 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.206 0.794 34 H 0.221 0.779 35 H 0.214 0.786 36 H 0.085 0.915 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.712 0.747 14.844 16.744 hybrid contribution -0.484 -0.354 -0.936 1.112 sum -8.196 0.393 13.908 16.148 Atomic orbital electron populations 1.69646 1.06018 1.27927 1.50038 1.25059 0.95017 0.99707 0.93350 0.86420 0.79859 0.82384 0.78402 1.20388 1.20993 1.19599 1.21558 0.93818 0.90013 1.52066 0.91370 1.19475 0.86183 0.92268 0.81261 1.86129 1.51679 1.54867 1.46549 1.22868 0.97400 0.94924 1.00386 1.22280 0.93072 0.95119 0.90534 1.48601 1.50429 1.12658 1.22350 1.16621 0.78681 0.86287 0.79986 1.90761 1.60880 1.14963 1.75558 1.21233 0.97830 1.01684 1.11997 1.23441 0.97813 0.85657 0.84615 1.68233 1.03349 1.33029 1.19454 1.25890 0.96327 0.87941 0.98698 1.84313 1.04557 1.19276 1.40030 1.25338 1.06954 0.98596 1.07689 1.21093 0.86320 1.02588 0.95609 1.45442 1.15923 1.19108 1.36224 1.17003 0.86043 0.83628 0.78549 1.90958 1.67480 1.22219 1.56416 1.23223 1.01767 0.78208 0.99944 0.91997 0.76622 0.90369 0.90401 0.91556 0.91796 0.79396 0.77877 0.78612 0.91507 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.41 10.96 55.43 0.61 -21.81 16 2 C 0.07 1.76 5.28 -17.82 -0.09 1.66 16 3 Si 0.90 19.41 29.54 -169.99 -5.02 14.39 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.54 -13.28 8.11 -34.44 -0.28 -13.56 16 8 H 0.07 1.67 7.77 -52.49 -0.41 1.26 16 9 C 0.25 5.82 0.85 -89.94 -0.08 5.74 16 10 O -0.58 -14.55 13.07 -35.23 -0.46 -15.01 16 11 C -0.12 -2.38 6.26 -24.32 -0.15 -2.54 16 12 C 0.11 2.26 6.90 -2.27 -0.02 2.25 16 13 N -0.61 -13.06 3.33 -171.72 -0.57 -13.63 16 14 C 0.60 13.26 7.13 -12.82 -0.09 13.17 16 15 O -0.54 -13.53 16.86 -4.56 -0.08 -13.61 16 16 C -0.31 -6.11 5.36 -104.65 -0.56 -6.67 16 17 C 0.24 4.02 9.70 -16.99 -0.16 3.86 16 18 N -0.51 -7.94 10.39 -13.57 -0.14 -8.08 16 19 C 0.28 3.64 8.07 -87.58 -0.71 2.93 16 20 S 0.27 2.08 23.14 -107.50 -2.49 -0.41 16 21 C -0.25 -1.48 11.13 29.01 0.32 -1.16 16 22 C 0.07 0.68 10.52 -16.83 -0.18 0.50 16 23 N -0.46 -6.50 2.82 -67.14 -0.19 -6.68 16 24 C 0.55 10.36 7.53 -14.37 -0.11 10.25 16 25 O -0.50 -10.83 16.56 -4.73 -0.08 -10.91 16 26 C 0.09 2.02 4.50 -3.06 -0.01 2.00 16 27 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 28 H 0.38 9.71 7.23 45.56 0.33 10.04 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.08 1.48 8.04 -51.93 -0.42 1.06 16 31 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.19 3.01 6.36 -52.49 -0.33 2.68 16 34 H 0.20 0.36 8.06 -52.49 -0.42 -0.07 16 35 H 0.20 1.56 8.00 -52.48 -0.42 1.14 16 36 H 0.07 1.46 5.47 -51.93 -0.28 1.17 16 37 H 0.06 1.55 8.00 -51.93 -0.42 1.14 16 LS Contribution 330.91 15.07 4.99 4.99 Total: -1.00 -33.33 330.91 -8.32 -41.65 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -2.77 Total: 10.66 kcal Atomic # 6 Polarization: 20.57 SS G_CDS: -2.12 Total: 18.45 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.29 Total: -50.20 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -0.62 Total: -39.53 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.49 Total: -0.41 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.33 -8.32 -41.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418178977.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.290 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds