Wall clock time and date at job start Tue Mar 31 2020 18:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00018 * 2 1 4 4 H 1.48502 * 109.46957 * 269.99810 * 3 2 1 5 5 H 1.48494 * 109.47055 * 29.99708 * 3 2 1 6 6 H 1.48499 * 109.47324 * 149.99884 * 3 2 1 7 7 C 1.37879 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99746 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99772 * 0.02562 * 7 2 1 10 10 O 1.42904 * 110.64485 * 59.29742 * 9 7 2 11 11 C 1.55157 * 110.71980 * 182.43657 * 9 7 2 12 12 C 1.55392 * 101.36498 * 153.94726 * 11 9 7 13 13 N 1.47421 * 104.87493 * 323.01752 * 12 11 9 14 14 C 1.34777 * 125.64818 * 204.16891 * 13 12 11 15 15 O 1.21689 * 120.00072 * 356.67357 * 14 13 12 16 16 C 1.46753 * 119.99931 * 176.67281 * 14 13 12 17 17 C 1.39972 * 120.85946 * 312.70466 * 16 14 13 18 18 N 1.31623 * 119.28776 * 179.97438 * 17 16 14 19 19 C 1.33669 * 122.37623 * 359.97438 * 18 17 16 20 20 S 1.71462 * 128.66183 * 179.97438 * 19 18 17 21 21 C 1.75589 * 91.30752 * 180.02562 * 20 19 18 22 22 C 1.31031 * 109.49510 * 359.97438 * 21 20 19 23 23 N 1.35129 * 121.39705 * 359.97438 * 19 18 17 24 24 C 1.36382 * 119.26243 * 359.73732 * 23 19 18 25 25 O 1.21879 * 120.30234 * 180.25032 * 24 23 19 26 26 C 1.47020 * 108.70503 * 24.13169 * 13 12 11 27 27 H 0.97003 * 120.00253 * 0.02562 * 1 2 3 28 28 H 0.96697 * 113.99919 * 300.70212 * 10 9 7 29 29 H 1.08998 * 111.00978 * 272.11840 * 11 9 7 30 30 H 1.09003 * 111.00277 * 35.97540 * 11 9 7 31 31 H 1.09006 * 110.34480 * 204.16904 * 12 11 9 32 32 H 1.08996 * 110.44358 * 81.92431 * 12 11 9 33 33 H 1.07997 * 120.35973 * 359.97438 * 17 16 14 34 34 H 1.07994 * 125.25351 * 180.02562 * 21 20 19 35 35 H 1.08007 * 122.31306 * 180.02562 * 22 21 20 36 36 H 1.09000 * 109.88498 * 239.52601 * 26 13 12 37 37 H 1.09004 * 109.88185 * 118.35461 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4083 -2.5943 -1.1496 11 6 2.2322 -3.6994 0.0629 12 6 1.3419 -4.7887 0.7229 13 7 0.5225 -4.0612 1.7092 14 6 -0.0441 -4.5976 2.8081 15 8 0.0522 -5.7919 3.0211 16 6 -0.7771 -3.7414 3.7479 17 6 -0.2303 -2.5328 4.1945 18 7 -0.9149 -1.7886 5.0371 19 6 -2.1225 -2.1434 5.4873 20 16 -3.1476 -1.3064 6.5775 21 6 -4.3625 -2.5695 6.4679 22 6 -3.9461 -3.5071 5.6528 23 7 -2.7090 -3.2962 5.0961 24 6 -2.0566 -4.1119 4.2191 25 8 -2.5699 -5.1539 3.8501 26 6 0.4265 -2.6536 1.2959 27 1 -0.4851 0.8400 -0.0004 28 1 -0.2486 -1.8877 -1.2154 29 1 2.5462 -3.9998 -0.9367 30 1 3.0942 -3.4673 0.6883 31 1 1.9618 -5.5343 1.2208 32 1 0.7048 -5.2633 -0.0234 33 1 0.7429 -2.2142 3.8514 34 1 -5.3074 -2.5726 6.9907 35 1 -4.5354 -4.3854 5.4339 36 1 0.8356 -2.0099 2.0746 37 1 -0.6148 -2.3932 1.1058 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001418178977.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:29 Heat of formation + Delta-G solvation = -51.067481 kcal Electronic energy + Delta-G solvation = -26941.725831 eV Core-core repulsion = 23004.144327 eV Total energy + Delta-G solvation = -3937.581504 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.67484 -41.08466 -39.40666 -38.75246 -38.19778 -35.98971 -34.17887 -32.95748 -32.62666 -31.32196 -29.59780 -27.96229 -26.90509 -25.65807 -24.60845 -23.25155 -21.50593 -20.79573 -20.32982 -20.08422 -19.13809 -18.62423 -18.13970 -17.68185 -17.47448 -16.96939 -16.60824 -16.10724 -15.88901 -15.63844 -15.52047 -14.97401 -14.83637 -14.72018 -14.54787 -14.41127 -13.90796 -13.67489 -13.44544 -13.26914 -12.81743 -12.70700 -12.51744 -12.30334 -12.23057 -12.07261 -12.00716 -11.55389 -11.41445 -11.18053 -11.01495 -10.76300 -10.60458 -10.24429 -9.64067 -8.91469 -8.22311 -6.38074 -1.32206 -0.59152 0.06559 0.27897 0.65832 0.84195 1.46968 1.50254 1.51332 1.59142 1.95807 2.33842 2.43040 2.85263 2.96313 3.04354 3.50241 3.74770 3.86542 4.00306 4.03351 4.13820 4.20360 4.26765 4.32845 4.55824 4.59685 4.75019 4.86382 4.92981 5.03794 5.09180 5.29218 5.31817 5.48350 5.77408 6.06361 6.14365 6.30730 6.51344 6.68504 7.06891 7.32301 7.40241 8.83897 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.004506 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.849930 B = 6211.859585 C = 7867.748634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.035 3.965 3 Si 0.960 3.040 4 H -0.281 1.281 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.554 4.554 8 H 0.069 0.931 9 C 0.232 3.768 10 O -0.593 6.593 11 C -0.107 4.107 12 C 0.111 3.889 13 N -0.610 5.610 14 C 0.597 3.403 15 O -0.582 6.582 16 C -0.371 4.371 17 C 0.264 3.736 18 N -0.534 5.534 19 C 0.245 3.755 20 S 0.373 5.627 21 C -0.196 4.196 22 C 0.023 3.977 23 N -0.454 5.454 24 C 0.542 3.458 25 O -0.548 6.548 26 C 0.113 3.887 27 H 0.271 0.729 28 H 0.377 0.623 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.190 0.810 34 H 0.262 0.738 35 H 0.206 0.794 36 H 0.069 0.931 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.462 3.159 16.900 19.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.166 4.166 3 Si 0.786 3.214 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.592 4.592 8 H 0.087 0.913 9 C 0.192 3.808 10 O -0.401 6.401 11 C -0.145 4.145 12 C -0.011 4.011 13 N -0.342 5.342 14 C 0.387 3.613 15 O -0.464 6.464 16 C -0.387 4.387 17 C 0.106 3.894 18 N -0.263 5.263 19 C -0.115 4.115 20 S 0.627 5.373 21 C -0.333 4.333 22 C -0.102 4.102 23 N -0.161 5.161 24 C 0.345 3.655 25 O -0.426 6.426 26 C -0.009 4.009 27 H 0.081 0.919 28 H 0.227 0.773 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.207 0.793 34 H 0.278 0.722 35 H 0.223 0.777 36 H 0.087 0.913 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.173 3.290 17.665 20.175 hybrid contribution -0.313 -0.903 -1.516 1.792 sum -9.486 2.387 16.149 18.881 Atomic orbital electron populations 1.69740 1.06971 1.28514 1.50071 1.25696 0.95690 1.02318 0.92917 0.85513 0.78909 0.78919 0.78055 1.20649 1.20726 1.19021 1.21766 0.93982 0.90808 1.52649 0.91303 1.19749 0.86669 0.93368 0.81024 1.86124 1.51786 1.54675 1.47538 1.22847 0.97073 0.93398 1.01208 1.22330 0.93040 0.95422 0.90345 1.48652 1.50633 1.12410 1.22506 1.17052 0.78044 0.86156 0.80088 1.90700 1.62318 1.16715 1.76650 1.20915 0.99488 1.03447 1.14874 1.23381 0.97669 0.84553 0.83810 1.68260 1.04708 1.32980 1.20305 1.27013 0.96568 0.88431 0.99495 1.84225 1.01629 1.16849 1.34601 1.26166 1.07539 0.95607 1.03956 1.21526 0.85380 1.05122 0.98138 1.45298 1.17156 1.18557 1.35085 1.16900 0.86108 0.83490 0.79030 1.90897 1.68726 1.24259 1.58763 1.22867 0.99824 0.78644 0.99589 0.91941 0.77284 0.89468 0.88938 0.90166 0.92677 0.79319 0.72236 0.77687 0.91274 0.94447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.07 10.96 21.45 0.24 -45.83 16 2 C 0.03 1.71 5.28 84.66 0.45 2.16 16 3 Si 0.96 39.36 29.54 68.60 2.03 41.38 16 4 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.55 -27.52 8.11 25.60 0.21 -27.31 16 8 H 0.07 3.34 7.77 -2.91 -0.02 3.32 16 9 C 0.23 11.08 0.85 -10.35 -0.01 11.07 16 10 O -0.59 -30.45 13.07 -148.98 -1.95 -32.39 16 11 C -0.11 -4.38 6.26 32.16 0.20 -4.18 16 12 C 0.11 4.61 6.90 87.03 0.60 5.21 16 13 N -0.61 -27.55 3.33 -815.42 -2.71 -30.26 16 14 C 0.60 28.27 7.13 86.47 0.62 28.89 16 15 O -0.58 -30.93 16.86 5.02 0.08 -30.85 16 16 C -0.37 -15.45 5.36 -19.88 -0.11 -15.55 16 17 C 0.26 9.31 9.70 85.14 0.83 10.13 16 18 N -0.53 -16.32 10.39 -196.86 -2.04 -18.36 16 19 C 0.24 6.06 8.07 179.29 1.45 7.50 16 20 S 0.37 3.95 23.14 -56.49 -1.31 2.64 16 21 C -0.20 -1.22 11.13 67.75 0.75 -0.46 16 22 C 0.02 0.38 10.52 83.77 0.88 1.26 16 23 N -0.45 -12.68 2.82 -483.55 -1.36 -14.04 16 24 C 0.54 21.65 7.53 84.74 0.64 22.29 16 25 O -0.55 -25.57 16.56 4.41 0.07 -25.50 16 26 C 0.11 5.24 4.50 86.73 0.39 5.63 16 27 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 28 H 0.38 19.85 7.23 -74.06 -0.54 19.31 16 29 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 30 H 0.09 3.47 8.04 -2.39 -0.02 3.46 16 31 H 0.08 3.10 8.07 -2.38 -0.02 3.08 16 32 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.19 6.33 6.36 -2.91 -0.02 6.31 16 34 H 0.26 -1.28 8.06 -2.91 -0.02 -1.30 16 35 H 0.21 2.98 8.00 -2.91 -0.02 2.95 16 36 H 0.07 3.12 5.47 -2.39 -0.01 3.11 16 37 H 0.04 1.91 8.00 -2.39 -0.02 1.89 16 Total: -1.00 -78.38 330.91 0.56 -77.82 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.62 Total: 28.75 kcal Atomic # 6 Polarization: 39.75 SS G_CDS: 6.89 Total: 46.65 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -5.88 Total: -108.50 kcal Atomic # 8 Polarization: -86.95 SS G_CDS: -1.79 Total: -88.74 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.38 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.31 Total: 2.64 kcal Total: -78.38 0.56 -77.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418178977.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.752 kcal (2) G-P(sol) polarization free energy of solvation -78.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds