Wall clock time and date at job start Tue Mar 31 2020 18:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99930 * 2 1 4 4 H 1.48504 * 109.47052 * 239.99694 * 3 2 1 5 5 H 1.48504 * 109.47347 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47062 * 119.99678 * 3 2 1 7 7 C 1.37881 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99478 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99950 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.64311 * 300.69524 * 9 7 2 11 11 C 1.55163 * 110.72109 * 177.55387 * 9 7 2 12 12 C 1.54908 * 101.58322 * 205.95609 * 11 9 7 13 13 N 1.47423 * 104.83102 * 37.01113 * 12 11 9 14 14 C 1.34783 * 125.64639 * 155.91000 * 13 12 11 15 15 O 1.21684 * 120.00155 * 354.99174 * 14 13 12 16 16 C 1.46746 * 119.99668 * 174.99404 * 14 13 12 17 17 C 1.39972 * 120.86243 * 79.29666 * 16 14 13 18 18 N 1.31612 * 119.29330 * 179.97438 * 17 16 14 19 19 C 1.33678 * 122.37494 * 0.02562 * 18 17 16 20 20 S 1.71460 * 128.65975 * 179.97438 * 19 18 17 21 21 C 1.75591 * 91.30328 * 180.02562 * 20 19 18 22 22 C 1.31040 * 109.49653 * 359.97438 * 21 20 19 23 23 N 1.35118 * 121.39580 * 359.97438 * 19 18 17 24 24 C 1.36391 * 119.26407 * 359.74283 * 23 19 18 25 25 O 1.21876 * 120.30469 * 180.24923 * 24 23 19 26 26 C 1.47026 * 108.70470 * 335.86564 * 13 12 11 27 27 H 0.97005 * 120.00218 * 0.02562 * 1 2 3 28 28 H 0.96706 * 114.00121 * 56.86317 * 10 9 7 29 29 H 1.09004 * 111.00134 * 324.03062 * 11 9 7 30 30 H 1.09001 * 111.00009 * 87.84227 * 11 9 7 31 31 H 1.08997 * 110.36255 * 155.84599 * 12 11 9 32 32 H 1.08999 * 110.36795 * 278.17215 * 12 11 9 33 33 H 1.08002 * 120.35197 * 359.95096 * 17 16 14 34 34 H 1.08001 * 125.24965 * 180.02562 * 21 20 19 35 35 H 1.07997 * 122.31048 * 180.02562 * 22 21 20 36 36 H 1.09000 * 109.88361 * 241.64516 * 26 13 12 37 37 H 1.09000 * 109.87781 * 120.48181 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.4075 -2.5938 1.1501 11 6 2.2322 -3.6996 -0.0608 12 6 1.3487 -4.7902 -0.7163 13 7 0.5283 -4.0673 -1.7050 14 6 -0.0371 -4.6082 -2.8025 15 8 0.1865 -5.7685 -3.0931 16 6 -0.9222 -3.7978 -3.6469 17 6 -0.3971 -2.8862 -4.5702 18 7 -1.2194 -2.1754 -5.3124 19 6 -2.5480 -2.2895 -5.2189 20 16 -3.7594 -1.4519 -6.0969 21 6 -5.0298 -2.3097 -5.2404 22 6 -4.4936 -3.1411 -4.3811 23 7 -3.1212 -3.1499 -4.3488 24 6 -2.3265 -3.9216 -3.5532 25 8 -2.8233 -4.7073 -2.7649 26 6 0.4280 -2.6589 -1.2951 27 1 -0.4851 0.8401 -0.0004 28 1 -0.2248 -1.8670 1.2350 29 1 3.0947 -3.4677 -0.6857 30 1 2.5461 -3.9990 0.9392 31 1 1.9712 -5.5352 -1.2118 32 1 0.7123 -5.2631 0.0317 33 1 0.6715 -2.7671 -4.6723 34 1 -6.0895 -2.1738 -5.3982 35 1 -5.0901 -3.7757 -3.7425 36 1 -0.6141 -2.4010 -1.1066 37 1 0.8359 -2.0160 -2.0751 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001418178979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:33 Heat of formation + Delta-G solvation = -28.606847 kcal Electronic energy + Delta-G solvation = -26990.664448 eV Core-core repulsion = 23054.056910 eV Total energy + Delta-G solvation = -3936.607538 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.53639 -39.44936 -37.92323 -37.40624 -36.83440 -34.16829 -32.25667 -31.72902 -31.41903 -29.81885 -27.84864 -26.72940 -25.10333 -24.45117 -23.22907 -22.02076 -19.71525 -19.34914 -19.28672 -18.88718 -17.48517 -17.12708 -16.93043 -16.32174 -15.83263 -15.59601 -14.99755 -14.80134 -14.48433 -14.36811 -14.06499 -13.63206 -13.57879 -13.02328 -12.90381 -12.84394 -12.61367 -12.10613 -11.93200 -11.66183 -11.55108 -11.08515 -10.80416 -10.66111 -10.57856 -10.56987 -10.51560 -10.27186 -10.22086 -9.73669 -9.46803 -9.34920 -8.73341 -8.35652 -7.90415 -7.80610 -6.35625 -4.44560 -0.15496 0.31549 1.03559 1.05363 1.74778 1.89732 3.06607 3.17339 3.22897 3.25281 3.28256 3.70882 3.94852 4.12352 4.21606 4.65427 4.72610 4.88775 4.91844 5.07388 5.37502 5.52465 5.63616 5.78871 5.88127 5.96708 6.04528 6.11210 6.26937 6.50492 6.70797 6.79596 6.97527 7.12097 7.29122 7.31208 7.57112 7.66592 7.92902 8.21376 8.57690 8.68792 9.24913 9.37123 10.71560 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.004608 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.607914 B = 6074.335582 C = 7483.765919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.068 0.932 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.118 4.118 12 C 0.110 3.890 13 N -0.600 5.600 14 C 0.603 3.397 15 O -0.549 6.549 16 C -0.302 4.302 17 C 0.230 3.770 18 N -0.513 5.513 19 C 0.273 3.727 20 S 0.263 5.737 21 C -0.247 4.247 22 C 0.072 3.928 23 N -0.454 5.454 24 C 0.547 3.453 25 O -0.504 6.504 26 C 0.096 3.904 27 H 0.270 0.730 28 H 0.383 0.617 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.184 0.816 34 H 0.205 0.795 35 H 0.197 0.803 36 H 0.061 0.939 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.670 0.283 -12.666 15.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.393 6.393 11 C -0.156 4.156 12 C -0.012 4.012 13 N -0.332 5.332 14 C 0.389 3.611 15 O -0.428 6.428 16 C -0.317 4.317 17 C 0.079 3.921 18 N -0.241 5.241 19 C -0.090 4.090 20 S 0.515 5.485 21 C -0.384 4.384 22 C -0.055 4.055 23 N -0.164 5.164 24 C 0.349 3.651 25 O -0.379 6.379 26 C -0.026 4.026 27 H 0.080 0.920 28 H 0.234 0.766 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.201 0.799 34 H 0.221 0.779 35 H 0.214 0.786 36 H 0.079 0.921 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.320 0.160 -13.720 16.587 hybrid contribution -0.356 0.065 1.542 1.584 sum -9.676 0.225 -12.178 15.556 Atomic orbital electron populations 1.69649 1.06027 1.27970 1.50088 1.25074 0.95035 0.99744 0.93375 0.86462 0.79566 0.81978 0.78958 1.19936 1.21108 1.19911 1.21519 0.93790 0.90027 1.52052 0.91402 1.19459 0.86137 0.92245 0.81322 1.86121 1.53530 1.52629 1.46975 1.22786 0.97468 0.94948 1.00407 1.22234 0.93239 0.95313 0.90439 1.48677 1.49631 1.12687 1.22233 1.16614 0.79245 0.85532 0.79693 1.90749 1.62954 1.17116 1.71990 1.21219 0.92087 1.09498 1.08930 1.23051 0.99937 0.83989 0.85173 1.68168 0.96890 1.29150 1.29885 1.25806 0.97606 0.92781 0.92840 1.84264 0.88115 1.39231 1.36872 1.25329 1.05734 1.03716 1.03632 1.21092 0.82308 1.01229 1.00910 1.45336 1.07502 1.32288 1.31310 1.16976 0.86642 0.80849 0.80680 1.90954 1.75024 1.35949 1.35966 1.23078 1.01568 0.77995 0.99941 0.91995 0.76575 0.90417 0.90392 0.91381 0.91716 0.79901 0.77856 0.78587 0.92058 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.91 10.97 55.43 0.61 -22.30 16 2 C 0.07 1.77 5.26 -17.82 -0.09 1.67 16 3 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.54 -13.55 8.12 -34.44 -0.28 -13.83 16 8 H 0.07 1.69 7.77 -52.49 -0.41 1.28 16 9 C 0.25 5.98 0.86 -89.94 -0.08 5.90 16 10 O -0.58 -14.89 13.09 -35.23 -0.46 -15.35 16 11 C -0.12 -2.45 6.22 -24.58 -0.15 -2.60 16 12 C 0.11 2.26 6.92 -2.53 -0.02 2.24 16 13 N -0.60 -13.22 3.33 -172.03 -0.57 -13.79 16 14 C 0.60 13.36 6.86 -12.82 -0.09 13.27 16 15 O -0.55 -13.37 17.34 5.20 0.09 -13.28 16 16 C -0.30 -5.88 4.84 -104.65 -0.51 -6.39 16 17 C 0.23 3.75 11.07 -17.00 -0.19 3.56 16 18 N -0.51 -7.69 10.39 -13.58 -0.14 -7.84 16 19 C 0.27 3.63 8.07 -87.59 -0.71 2.92 16 20 S 0.26 2.09 23.15 -107.50 -2.49 -0.40 16 21 C -0.25 -1.56 11.13 29.00 0.32 -1.24 16 22 C 0.07 0.72 10.52 -16.84 -0.18 0.54 16 23 N -0.45 -6.60 2.82 -67.14 -0.19 -6.79 16 24 C 0.55 10.49 7.55 -14.37 -0.11 10.38 16 25 O -0.50 -11.11 16.93 5.03 0.09 -11.02 16 26 C 0.10 2.23 5.00 -3.06 -0.02 2.22 16 27 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 28 H 0.38 9.96 7.17 45.56 0.33 10.29 16 29 H 0.08 1.51 8.04 -51.93 -0.42 1.09 16 30 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.07 1.30 7.99 -51.93 -0.41 0.88 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.18 2.55 8.06 -52.49 -0.42 2.13 16 34 H 0.20 0.43 8.06 -52.49 -0.42 0.01 16 35 H 0.20 1.67 8.00 -52.49 -0.42 1.25 16 36 H 0.06 1.55 8.01 -51.93 -0.42 1.14 16 37 H 0.07 1.54 7.82 -51.93 -0.41 1.13 16 LS Contribution 336.80 15.07 5.08 5.08 Total: -1.00 -33.66 336.80 -8.08 -41.74 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -2.98 Total: 10.63 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: -2.09 Total: 18.65 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.29 Total: -50.72 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -0.29 Total: -39.65 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.49 Total: -0.40 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.66 -8.08 -41.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418178979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.137 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds