Wall clock time and date at job start Tue Mar 31 2020 18:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34775 * 116.99925 * 2 1 4 4 O 1.21547 * 120.00241 * 359.97438 * 3 2 1 5 5 C 1.47083 * 119.99921 * 180.02562 * 3 2 1 6 6 C 1.38185 * 126.45996 * 0.04183 * 5 3 2 7 7 N 1.34143 * 107.53532 * 179.97438 * 6 5 3 8 8 C 1.46507 * 125.65557 * 179.97438 * 7 6 5 9 9 N 1.39907 * 108.68277 * 359.77429 * 7 6 5 10 10 C 1.30957 * 108.87657 * 0.38637 * 9 7 6 11 11 N 1.39582 * 126.08574 * 179.88103 * 10 9 7 12 12 C 1.34780 * 120.00228 * 359.69917 * 11 10 9 13 13 O 1.21784 * 119.99674 * 359.97438 * 12 11 10 14 14 C 1.46168 * 119.99976 * 179.72205 * 12 11 10 15 15 S 1.75666 * 125.23399 * 0.29363 * 14 12 11 16 16 C 1.75470 * 92.09672 * 180.02562 * 15 14 12 17 17 C 1.32757 * 111.37027 * 0.02562 * 16 15 14 18 18 C 1.39590 * 125.22896 * 179.97438 * 14 12 11 19 19 C 1.40508 * 123.72037 * 359.97438 * 18 14 12 20 20 H 1.07996 * 119.99924 * 334.96577 * 19 18 14 21 21 C 1.40319 * 119.99935 * 154.96054 * 19 18 14 22 22 N 1.30633 * 119.99600 * 162.39068 * 21 19 18 23 23 Si 1.86799 * 119.99952 * 342.39439 * 21 19 18 24 24 H 1.48500 * 109.46926 * 94.00487 * 23 21 19 25 25 H 1.48496 * 109.46708 * 214.00379 * 23 21 19 26 26 H 1.48493 * 109.47241 * 334.00072 * 23 21 19 27 27 H 1.09003 * 109.46885 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.46703 * 300.00285 * 1 2 3 29 29 H 1.08997 * 109.46700 * 60.00359 * 1 2 3 30 30 H 1.07992 * 126.22844 * 359.92594 * 6 5 3 31 31 H 1.09001 * 109.46802 * 90.00674 * 8 7 6 32 32 H 1.09002 * 109.46781 * 209.99784 * 8 7 6 33 33 H 1.08998 * 109.47079 * 330.00376 * 8 7 6 34 34 H 0.97003 * 120.00350 * 179.68495 * 11 10 9 35 35 H 1.07995 * 124.31318 * 179.97438 * 16 15 14 36 36 H 1.08000 * 122.78040 * 180.02562 * 17 16 15 37 37 H 0.97000 * 119.99844 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2203 -0.0005 5 6 3.5327 1.2778 -0.0006 6 6 4.4109 0.2110 -0.0019 7 7 5.6553 0.7118 -0.0026 8 6 6.8921 -0.0736 -0.0035 9 7 5.5762 2.1087 -0.0069 10 6 4.3151 2.4616 -0.0004 11 7 3.8274 3.7695 0.0004 12 6 4.6856 4.8087 0.0004 13 8 5.8866 4.6067 0.0001 14 6 4.1749 6.1783 -0.0048 15 16 2.4763 6.6265 -0.0041 16 6 2.8616 8.3383 -0.0131 17 6 4.1740 8.5388 -0.0169 18 6 4.9618 7.3312 -0.0049 19 6 6.3668 7.3165 0.0007 20 1 6.8964 6.4646 0.4010 21 6 7.0819 8.4087 -0.5137 22 7 8.3428 8.5652 -0.2103 23 14 6.2308 9.6389 -1.6325 24 1 5.7261 10.7772 -0.8232 25 1 7.1967 10.1397 -2.6430 26 1 5.0930 8.9777 -2.3204 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 4.1440 -0.8354 -0.0017 31 1 7.1982 -0.2680 -1.0315 32 1 7.6762 0.4828 0.5099 33 1 6.7219 -1.0198 0.5101 34 1 2.8709 3.9305 0.0008 35 1 2.1251 9.1281 -0.0160 36 1 4.6149 9.5247 -0.0221 37 1 8.8373 9.3200 -0.5662 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433575993.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:39 Heat of formation + Delta-G solvation = -5.571138 kcal Electronic energy + Delta-G solvation = -25803.235314 eV Core-core repulsion = 21867.626679 eV Total energy + Delta-G solvation = -3935.608635 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.32893 -39.78370 -38.37810 -36.39807 -36.15003 -34.19225 -33.38757 -32.09482 -30.54650 -29.24145 -27.82326 -27.15095 -26.06171 -23.06982 -22.39048 -21.55392 -20.62592 -19.46811 -18.88408 -17.97407 -17.36131 -17.01464 -16.32262 -16.15523 -15.83149 -15.46844 -15.46164 -15.00463 -14.43213 -13.95163 -13.71016 -13.67052 -13.28569 -13.22712 -13.07596 -12.76481 -12.53190 -12.34048 -12.07212 -12.03450 -11.57590 -11.40608 -10.95338 -10.77205 -10.68191 -10.47201 -10.31903 -10.23448 -10.00682 -9.58522 -9.44502 -8.78046 -8.54494 -7.97575 -7.66182 -7.36515 -7.21900 -4.59499 1.40205 1.83437 2.34416 2.43870 2.83123 2.86164 2.87215 3.05268 3.09574 3.29750 3.47664 3.53584 3.75827 3.82727 4.43601 4.47179 4.70582 5.05586 5.06756 5.10163 5.11655 5.14572 5.30277 5.40029 5.49988 5.54827 5.75773 5.92651 6.16600 6.40673 6.59153 6.74768 6.87610 6.89163 7.08063 7.34579 7.54443 7.71444 7.94680 8.19760 8.36104 8.46982 8.72348 9.44234 9.75143 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014331 B = 0.003847 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.331423 B = 7276.037252 C = 9034.066487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.362 6.362 3 C 0.546 3.454 4 O -0.518 6.518 5 C -0.316 4.316 6 C 0.138 3.862 7 N -0.357 5.357 8 C 0.100 3.900 9 N -0.280 5.280 10 C 0.375 3.625 11 N -0.644 5.644 12 C 0.585 3.415 13 O -0.508 6.508 14 C -0.427 4.427 15 S -0.011 6.011 16 C -0.173 4.173 17 C -0.167 4.167 18 C 0.110 3.890 19 C -0.355 4.355 20 H 0.124 0.876 21 C 0.077 3.923 22 N -0.764 5.764 23 Si 0.910 3.090 24 H -0.264 1.264 25 H -0.281 1.281 26 H -0.239 1.239 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.190 0.810 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.420 0.580 35 H 0.145 0.855 36 H 0.126 0.874 37 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.334 -14.536 -0.643 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.278 6.278 3 C 0.392 3.608 4 O -0.407 6.407 5 C -0.331 4.331 6 C -0.018 4.018 7 N -0.133 5.133 8 C -0.041 4.041 9 N -0.110 5.110 10 C 0.116 3.884 11 N -0.297 5.297 12 C 0.382 3.618 13 O -0.384 6.384 14 C -0.546 4.546 15 S 0.246 5.754 16 C -0.308 4.308 17 C -0.200 4.200 18 C 0.099 3.901 19 C -0.384 4.384 20 H 0.142 0.858 21 C -0.148 4.148 22 N -0.386 5.386 23 Si 0.735 3.265 24 H -0.190 1.190 25 H -0.208 1.208 26 H -0.162 1.162 27 H 0.116 0.884 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.207 0.793 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.260 0.740 35 H 0.163 0.837 36 H 0.144 0.856 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.415 -14.644 -0.631 16.427 hybrid contribution -0.517 1.246 -0.416 1.412 sum -7.932 -13.399 -1.048 15.606 Atomic orbital electron populations 1.23207 0.76419 1.03224 1.02693 1.86514 1.23192 1.32957 1.85184 1.19935 0.87323 0.81258 0.72276 1.90811 1.66344 1.35794 1.47771 1.18974 0.90107 0.92331 1.31713 1.23057 0.84270 0.99385 0.95089 1.48443 1.05722 1.05674 1.53468 1.21974 0.83928 0.94339 1.03897 1.78327 1.15061 0.86466 1.31172 1.19241 0.89708 0.85753 0.93723 1.43481 1.11611 1.00484 1.74105 1.17038 0.85415 0.82700 0.76624 1.90803 1.14112 1.83854 1.49645 1.22205 0.92400 0.93795 1.46239 1.83062 1.09651 0.99879 1.82779 1.24977 0.98974 0.99090 1.07777 1.21442 0.93601 0.98939 1.06038 1.17839 0.93532 0.88179 0.90561 1.19882 0.89552 1.02482 1.26509 0.85837 1.26581 0.94980 0.97735 0.95512 1.69591 1.09639 1.27021 1.32334 0.86422 0.80486 0.79532 0.80018 1.18989 1.20793 1.16196 0.88391 0.91910 0.91923 0.79333 0.90187 0.88511 0.89197 0.74038 0.83685 0.85620 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.57 101.05 1.07 1.42 16 2 O -0.36 -4.41 10.39 -40.69 -0.42 -4.84 16 3 C 0.55 8.61 7.95 34.32 0.27 8.88 16 4 O -0.52 -9.47 14.99 -19.30 -0.29 -9.76 16 5 C -0.32 -5.21 6.14 -104.93 -0.64 -5.85 16 6 C 0.14 1.70 11.32 -16.56 -0.19 1.51 16 7 N -0.36 -5.09 3.97 -67.58 -0.27 -5.35 16 8 C 0.10 0.86 11.43 59.85 0.68 1.55 16 9 N -0.28 -5.82 10.71 31.59 0.34 -5.48 16 10 C 0.38 7.83 7.78 -154.60 -1.20 6.62 16 11 N -0.64 -14.73 5.41 -12.26 -0.07 -14.79 16 12 C 0.58 15.35 7.73 -13.08 -0.10 15.25 16 13 O -0.51 -14.73 13.19 5.11 0.07 -14.66 16 14 C -0.43 -11.01 6.50 -35.90 -0.23 -11.24 16 15 S -0.01 -0.23 22.25 -107.50 -2.39 -2.62 16 16 C -0.17 -3.55 11.07 28.86 0.32 -3.23 16 17 C -0.17 -3.81 7.55 -39.12 -0.30 -4.11 16 18 C 0.11 2.88 5.27 -106.20 -0.56 2.32 16 19 C -0.35 -9.92 8.99 -37.94 -0.34 -10.26 16 20 H 0.12 3.87 6.30 -52.49 -0.33 3.54 16 21 C 0.08 1.97 5.48 -17.28 -0.09 1.88 16 22 N -0.76 -19.64 13.92 55.57 0.77 -18.87 16 23 Si 0.91 19.48 24.53 -169.99 -4.17 15.31 16 24 H -0.26 -5.24 6.63 56.52 0.37 -4.86 16 25 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.24 -5.30 6.73 56.52 0.38 -4.92 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.19 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.42 9.13 6.03 -40.82 -0.25 8.88 16 35 H 0.15 2.39 8.06 -52.49 -0.42 1.97 16 36 H 0.13 2.69 4.54 -52.49 -0.24 2.46 16 37 H 0.29 6.64 8.29 -40.82 -0.34 6.30 16 LS Contribution 337.71 15.07 5.09 5.09 Total: -1.00 -35.22 337.71 -6.03 -41.26 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -3.38 Total: 9.99 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -1.32 Total: 4.74 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.78 Total: -44.50 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.64 Total: -29.26 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.17 Total: 15.31 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -2.39 Total: -2.62 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.22 -6.03 -41.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433575993.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.685 kcal (2) G-P(sol) polarization free energy of solvation -35.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds