Wall clock time and date at job start Tue Mar 31 2020 18:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34775 * 116.99925 * 2 1 4 4 O 1.21547 * 120.00241 * 359.97438 * 3 2 1 5 5 C 1.47083 * 119.99921 * 180.02562 * 3 2 1 6 6 C 1.38185 * 126.45996 * 0.04183 * 5 3 2 7 7 N 1.34143 * 107.53532 * 179.97438 * 6 5 3 8 8 C 1.46507 * 125.65557 * 179.97438 * 7 6 5 9 9 N 1.39907 * 108.68277 * 359.77429 * 7 6 5 10 10 C 1.30957 * 108.87657 * 0.38637 * 9 7 6 11 11 N 1.39582 * 126.08574 * 179.88103 * 10 9 7 12 12 C 1.34780 * 120.00228 * 359.69917 * 11 10 9 13 13 O 1.21784 * 119.99674 * 359.97438 * 12 11 10 14 14 C 1.46168 * 119.99976 * 179.72205 * 12 11 10 15 15 S 1.75666 * 125.23399 * 0.29363 * 14 12 11 16 16 C 1.75470 * 92.09672 * 180.02562 * 15 14 12 17 17 C 1.32757 * 111.37027 * 0.02562 * 16 15 14 18 18 C 1.39590 * 125.22896 * 179.97438 * 14 12 11 19 19 C 1.40508 * 123.72037 * 359.97438 * 18 14 12 20 20 H 1.07996 * 119.99924 * 334.96577 * 19 18 14 21 21 C 1.40319 * 119.99935 * 154.96054 * 19 18 14 22 22 N 1.30633 * 119.99600 * 162.39068 * 21 19 18 23 23 Si 1.86799 * 119.99952 * 342.39439 * 21 19 18 24 24 H 1.48500 * 109.46926 * 94.00487 * 23 21 19 25 25 H 1.48496 * 109.46708 * 214.00379 * 23 21 19 26 26 H 1.48493 * 109.47241 * 334.00072 * 23 21 19 27 27 H 1.09003 * 109.46885 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.46703 * 300.00285 * 1 2 3 29 29 H 1.08997 * 109.46700 * 60.00359 * 1 2 3 30 30 H 1.07992 * 126.22844 * 359.92594 * 6 5 3 31 31 H 1.09001 * 109.46802 * 90.00674 * 8 7 6 32 32 H 1.09002 * 109.46781 * 209.99784 * 8 7 6 33 33 H 1.08998 * 109.47079 * 330.00376 * 8 7 6 34 34 H 0.97003 * 120.00350 * 179.68495 * 11 10 9 35 35 H 1.07995 * 124.31318 * 179.97438 * 16 15 14 36 36 H 1.08000 * 122.78040 * 180.02562 * 17 16 15 37 37 H 0.97000 * 119.99844 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2203 -0.0005 5 6 3.5327 1.2778 -0.0006 6 6 4.4109 0.2110 -0.0019 7 7 5.6553 0.7118 -0.0026 8 6 6.8921 -0.0736 -0.0035 9 7 5.5762 2.1087 -0.0069 10 6 4.3151 2.4616 -0.0004 11 7 3.8274 3.7695 0.0004 12 6 4.6856 4.8087 0.0004 13 8 5.8866 4.6067 0.0001 14 6 4.1749 6.1783 -0.0048 15 16 2.4763 6.6265 -0.0041 16 6 2.8616 8.3383 -0.0131 17 6 4.1740 8.5388 -0.0169 18 6 4.9618 7.3312 -0.0049 19 6 6.3668 7.3165 0.0007 20 1 6.8964 6.4646 0.4010 21 6 7.0819 8.4087 -0.5137 22 7 8.3428 8.5652 -0.2103 23 14 6.2308 9.6389 -1.6325 24 1 5.7261 10.7772 -0.8232 25 1 7.1967 10.1397 -2.6430 26 1 5.0930 8.9777 -2.3204 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 4.1440 -0.8354 -0.0017 31 1 7.1982 -0.2680 -1.0315 32 1 7.6762 0.4828 0.5099 33 1 6.7219 -1.0198 0.5101 34 1 2.8709 3.9305 0.0008 35 1 2.1251 9.1281 -0.0160 36 1 4.6149 9.5247 -0.0221 37 1 8.8373 9.3200 -0.5662 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433575993.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:38 Heat of formation + Delta-G solvation = -31.615464 kcal Electronic energy + Delta-G solvation = -25804.364681 eV Core-core repulsion = 21867.626679 eV Total energy + Delta-G solvation = -3936.738002 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.61567 -40.91450 -40.24574 -38.13315 -37.37392 -35.84263 -35.29375 -33.42720 -31.83614 -31.06417 -28.96203 -28.57124 -27.31626 -24.56654 -23.80101 -23.15844 -21.93681 -21.04697 -20.74920 -19.53742 -18.70078 -18.24719 -17.77104 -17.44736 -17.40589 -17.00533 -16.60991 -16.33951 -16.21522 -15.65471 -15.41152 -15.05170 -14.71660 -14.30222 -14.26951 -14.19674 -13.96694 -13.61972 -13.50217 -13.33896 -13.09949 -12.87992 -12.77688 -12.30187 -11.96750 -11.87027 -11.77011 -11.72119 -11.56763 -11.34987 -11.21397 -10.53402 -10.10420 -9.62817 -9.39600 -9.16858 -9.12313 -6.60724 0.01160 0.33871 0.98827 1.13020 1.15926 1.26866 1.33417 1.42909 1.57876 1.67068 1.75708 2.01216 2.06975 2.38072 2.52404 3.11613 3.34002 3.82320 4.14288 4.17786 4.31492 4.35663 4.42318 4.43295 4.45674 4.47506 4.60686 4.72622 4.76273 4.82379 4.94166 5.14217 5.24563 5.36395 5.63073 5.74211 5.92581 6.09410 6.17365 6.40707 6.58754 6.80120 6.87639 7.50252 7.92548 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014331 B = 0.003847 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.331423 B = 7276.037252 C = 9034.066487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.348 6.348 3 C 0.550 3.450 4 O -0.553 6.553 5 C -0.341 4.341 6 C 0.179 3.821 7 N -0.352 5.352 8 C 0.087 3.913 9 N -0.341 5.341 10 C 0.339 3.661 11 N -0.644 5.644 12 C 0.575 3.425 13 O -0.551 6.551 14 C -0.464 4.464 15 S 0.032 5.968 16 C -0.145 4.145 17 C -0.195 4.195 18 C 0.101 3.899 19 C -0.400 4.400 20 H 0.066 0.934 21 C 0.041 3.959 22 N -0.804 5.804 23 Si 0.973 3.027 24 H -0.227 1.227 25 H -0.267 1.267 26 H -0.250 1.250 27 H 0.140 0.860 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.255 0.745 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.423 0.577 35 H 0.200 0.800 36 H 0.145 0.855 37 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.132 -15.653 -1.349 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.264 6.264 3 C 0.398 3.602 4 O -0.446 6.446 5 C -0.356 4.356 6 C 0.023 3.977 7 N -0.129 5.129 8 C -0.051 4.051 9 N -0.171 5.171 10 C 0.081 3.919 11 N -0.295 5.295 12 C 0.373 3.627 13 O -0.431 6.431 14 C -0.583 4.583 15 S 0.290 5.710 16 C -0.280 4.280 17 C -0.228 4.228 18 C 0.090 3.910 19 C -0.430 4.430 20 H 0.085 0.915 21 C -0.180 4.180 22 N -0.427 5.427 23 Si 0.792 3.208 24 H -0.151 1.151 25 H -0.192 1.192 26 H -0.174 1.174 27 H 0.158 0.842 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.271 0.729 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.162 0.838 34 H 0.263 0.737 35 H 0.217 0.783 36 H 0.162 0.838 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.210 -15.828 -1.314 18.881 hybrid contribution 0.287 1.231 -0.144 1.272 sum -9.922 -14.597 -1.458 17.710 Atomic orbital electron populations 1.23577 0.74380 1.05891 1.02421 1.86491 1.25000 1.30551 1.84386 1.19862 0.87069 0.81789 0.71497 1.90783 1.66999 1.37201 1.49583 1.19170 0.91219 0.91710 1.33509 1.23921 0.82231 1.00933 0.90602 1.48801 1.08202 1.03635 1.52242 1.22494 0.81702 0.95255 1.05646 1.78136 1.16039 0.90955 1.31942 1.19563 0.90995 0.85816 0.95507 1.43155 1.11118 1.01285 1.73979 1.17375 0.85290 0.83936 0.76110 1.90766 1.15938 1.84868 1.51528 1.22711 0.95730 0.93905 1.45924 1.82827 1.05617 1.00716 1.81864 1.25590 0.99114 0.99555 1.03717 1.21423 0.94182 0.98266 1.08939 1.18192 0.93253 0.90162 0.89415 1.19672 0.90871 1.02348 1.30144 0.91543 1.27426 0.95490 0.98967 0.96163 1.69599 1.10961 1.28471 1.33666 0.85507 0.79211 0.77762 0.78325 1.15121 1.19235 1.17402 0.84178 0.92255 0.92267 0.72893 0.88493 0.90178 0.83771 0.73696 0.78309 0.83791 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.57 113.37 1.20 1.67 16 2 O -0.35 -7.55 10.39 -56.86 -0.59 -8.14 16 3 C 0.55 16.89 7.95 70.14 0.56 17.44 16 4 O -0.55 -20.41 14.99 19.68 0.30 -20.12 16 5 C -0.34 -11.08 6.14 -20.06 -0.12 -11.21 16 6 C 0.18 3.91 11.32 84.33 0.95 4.86 16 7 N -0.35 -9.67 3.97 -367.74 -1.46 -11.13 16 8 C 0.09 1.33 11.43 127.77 1.46 2.80 16 9 N -0.34 -14.89 10.71 -53.96 -0.58 -15.47 16 10 C 0.34 14.84 7.78 133.98 1.04 15.88 16 11 N -0.64 -31.27 5.41 -310.88 -1.68 -32.95 16 12 C 0.58 32.51 7.73 86.30 0.67 33.18 16 13 O -0.55 -35.17 13.19 -4.62 -0.06 -35.23 16 14 C -0.46 -24.97 6.50 24.66 0.16 -24.81 16 15 S 0.03 1.36 22.25 -56.49 -1.26 0.11 16 16 C -0.15 -5.48 11.07 66.64 0.74 -4.74 16 17 C -0.20 -8.69 7.55 22.61 0.17 -8.51 16 18 C 0.10 5.52 5.27 -20.89 -0.11 5.41 16 19 C -0.40 -24.15 8.99 23.33 0.21 -23.94 16 20 H 0.07 4.66 6.30 -2.91 -0.02 4.64 16 21 C 0.04 2.18 5.48 85.38 0.47 2.65 16 22 N -0.80 -43.50 13.92 21.89 0.30 -43.19 16 23 Si 0.97 39.83 24.53 68.60 1.68 41.51 16 24 H -0.23 -7.97 6.63 99.48 0.66 -7.31 16 25 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 26 H -0.25 -10.66 6.73 99.48 0.67 -9.99 16 27 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.26 1.99 8.06 -2.91 -0.02 1.97 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.42 19.31 6.03 -92.71 -0.56 18.75 16 35 H 0.20 5.35 8.06 -2.91 -0.02 5.33 16 36 H 0.14 5.80 4.54 -2.91 -0.01 5.78 16 37 H 0.31 14.36 8.29 -92.71 -0.77 13.59 16 Total: -1.00 -88.98 337.71 4.56 -84.42 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.51 Total: 29.52 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 7.39 Total: 10.68 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -3.41 Total: -102.74 kcal Atomic # 8 Polarization: -63.13 SS G_CDS: -0.36 Total: -63.49 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 1.68 Total: 41.51 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -1.26 Total: 0.11 kcal Total: -88.98 4.56 -84.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433575993.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.804 kcal (2) G-P(sol) polarization free energy of solvation -88.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds