Wall clock time and date at job start Tue Mar 31 2020 19:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86804 * 119.99672 * 2 1 4 4 H 1.48496 * 109.47163 * 85.13979 * 3 2 1 5 5 H 1.48505 * 109.46942 * 205.13500 * 3 2 1 6 6 H 1.48499 * 109.47327 * 325.13518 * 3 2 1 7 7 C 1.40306 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99969 * 189.92314 * 7 2 1 9 9 C 1.40544 * 119.99778 * 9.92836 * 7 2 1 10 10 C 1.44182 * 123.71478 * 23.30874 * 9 7 2 11 11 C 1.32772 * 114.42738 * 179.76392 * 10 9 7 12 12 S 1.75468 * 111.36100 * 0.49277 * 11 10 9 13 13 C 1.39540 * 123.71232 * 203.60885 * 9 7 2 14 14 C 1.46243 * 125.22909 * 359.97438 * 13 9 7 15 15 O 1.21766 * 119.99799 * 0.02562 * 14 13 9 16 16 N 1.34780 * 120.00075 * 180.02562 * 14 13 9 17 17 C 1.46496 * 119.99806 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.47676 * 34.99743 * 17 16 14 19 19 C 1.53006 * 109.47378 * 275.00065 * 17 16 14 20 20 O 1.42899 * 109.47062 * 295.00182 * 19 17 16 21 21 C 1.50702 * 109.47132 * 155.00183 * 17 16 14 22 22 C 1.38240 * 119.97317 * 39.72434 * 21 17 16 23 23 C 1.38198 * 120.02494 * 179.76952 * 22 21 17 24 24 C 1.38451 * 119.97432 * 0.50662 * 23 22 21 25 25 F 1.35097 * 120.02793 * 179.77192 * 24 23 22 26 26 C 1.38464 * 119.94908 * 359.74154 * 24 23 22 27 27 C 1.38194 * 119.97371 * 0.02562 * 26 24 23 28 28 H 0.97001 * 119.99797 * 359.97438 * 1 2 3 29 29 H 1.08000 * 122.78643 * 0.02562 * 10 9 7 30 30 H 1.08004 * 124.31702 * 180.22824 * 11 10 9 31 31 H 0.96995 * 119.99985 * 0.02562 * 16 14 13 32 32 H 1.09004 * 109.47020 * 55.00143 * 19 17 16 33 33 H 1.08991 * 109.47555 * 175.00026 * 19 17 16 34 34 H 0.96694 * 114.00052 * 179.97438 * 20 19 17 35 35 H 1.08002 * 119.98766 * 0.02562 * 22 21 17 36 36 H 1.08001 * 120.01149 * 180.25112 * 23 22 21 37 37 H 1.08000 * 120.01343 * 179.97438 * 26 24 23 38 38 H 1.07999 * 119.99024 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.3851 2.1058 1.3950 5 1 3.5856 1.4128 -0.5947 6 1 1.4930 2.6209 -0.8003 7 6 2.0080 -1.2151 -0.0005 8 1 3.0759 -1.2221 0.1606 9 6 1.3211 -2.4230 -0.2109 10 6 0.0540 -2.5148 -0.8929 11 6 -0.4275 -3.7481 -0.9929 12 16 0.6419 -4.9152 -0.2360 13 6 1.7873 -3.6647 0.2224 14 6 3.0377 -3.8905 0.9465 15 8 3.7633 -2.9506 1.2161 16 7 3.3868 -5.1390 1.3154 17 6 4.6396 -5.3651 2.0403 18 1 4.8311 -4.5239 2.7064 19 6 5.7907 -5.4963 1.0408 20 8 5.5984 -6.6668 0.2438 21 6 4.5302 -6.6318 2.8494 22 6 3.8913 -7.7370 2.3192 23 6 3.7945 -8.9007 3.0584 24 6 4.3285 -8.9559 4.3346 25 9 4.2305 -10.0914 5.0599 26 6 4.9638 -7.8466 4.8666 27 6 5.0636 -6.6856 4.1237 28 1 -0.4850 0.8401 0.0004 29 1 -0.4586 -1.6526 -1.2930 30 1 -1.3607 -4.0001 -1.4748 31 1 2.8090 -5.8877 1.1003 32 1 5.8141 -4.6176 0.3962 33 1 6.7339 -5.5757 1.5811 34 1 6.2922 -6.8132 -0.4136 35 1 3.4712 -7.6925 1.3252 36 1 3.2988 -9.7653 2.6423 37 1 5.3804 -7.8883 5.8622 38 1 5.5594 -5.8203 4.5383 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434020341.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:27 Heat of formation + Delta-G solvation = -86.215032 kcal Electronic energy + Delta-G solvation = -25625.157749 eV Core-core repulsion = 21666.132170 eV Total energy + Delta-G solvation = -3959.025578 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.93123 -39.74858 -38.13154 -36.67632 -35.90845 -33.91922 -33.07774 -31.29476 -30.75767 -29.01821 -27.93901 -26.01276 -23.46432 -23.17376 -22.22093 -20.87158 -19.70395 -18.81772 -18.11891 -17.53222 -17.20109 -16.32100 -15.87529 -15.73866 -15.61801 -15.32805 -14.90613 -14.41902 -14.31657 -13.88507 -13.70740 -13.57730 -13.38315 -13.15595 -12.65454 -12.49022 -12.43625 -12.01435 -11.93457 -11.65231 -11.45828 -11.16806 -11.12793 -11.00068 -10.95455 -10.44863 -10.16419 -9.89087 -9.66195 -9.26363 -9.12150 -8.67096 -8.44011 -8.30271 -7.51108 -7.14799 -7.06715 -4.54914 1.09377 1.22295 2.14100 2.93774 2.97459 3.05539 3.12244 3.52389 3.62669 3.78066 3.83491 4.05523 4.21903 4.32716 4.50632 4.66751 4.72884 4.84157 5.21344 5.25957 5.33130 5.45103 5.54253 5.70022 5.81942 5.91852 6.03145 6.04453 6.07904 6.23824 6.47692 6.67557 6.81672 6.85171 7.15232 7.18623 7.26081 7.45939 7.68316 7.73692 8.33281 8.42037 8.57918 8.75115 9.53347 9.84204 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015910 B = 0.003225 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.500444 B = 8681.156713 C = 9417.602732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.067 3.933 3 Si 0.925 3.075 4 H -0.265 1.265 5 H -0.255 1.255 6 H -0.274 1.274 7 C -0.376 4.376 8 H 0.112 0.888 9 C 0.141 3.859 10 C -0.100 4.100 11 C -0.205 4.205 12 S -0.050 6.050 13 C -0.429 4.429 14 C 0.602 3.398 15 O -0.567 6.567 16 N -0.737 5.737 17 C 0.195 3.805 18 H 0.105 0.895 19 C 0.069 3.931 20 O -0.565 6.565 21 C -0.089 4.089 22 C -0.058 4.058 23 C -0.154 4.154 24 C 0.091 3.909 25 F -0.145 7.145 26 C -0.156 4.156 27 C -0.084 4.084 28 H 0.288 0.712 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.393 0.607 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.374 0.626 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.000 -9.887 2.967 12.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.155 4.155 3 Si 0.749 3.251 4 H -0.190 1.190 5 H -0.178 1.178 6 H -0.199 1.199 7 C -0.407 4.407 8 H 0.129 0.871 9 C 0.130 3.870 10 C -0.133 4.133 11 C -0.339 4.339 12 S 0.205 5.795 13 C -0.548 4.548 14 C 0.400 3.600 15 O -0.451 6.451 16 N -0.391 5.391 17 C 0.089 3.911 18 H 0.123 0.877 19 C -0.010 4.010 20 O -0.370 6.370 21 C -0.089 4.089 22 C -0.076 4.076 23 C -0.173 4.173 24 C 0.072 3.928 25 F -0.123 7.123 26 C -0.175 4.175 27 C -0.102 4.102 28 H 0.099 0.901 29 H 0.163 0.837 30 H 0.155 0.845 31 H 0.227 0.773 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.220 0.780 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.699 -10.692 3.752 13.163 hybrid contribution 0.319 1.613 -0.470 1.710 sum 7.018 -9.079 3.281 11.935 Atomic orbital electron populations 1.69676 1.08088 1.30355 1.32018 1.26387 0.94940 1.02596 0.91563 0.85991 0.80706 0.78892 0.79546 1.19009 1.17831 1.19885 1.20038 0.97762 0.88791 1.34133 0.87064 1.17925 0.89497 0.91784 0.87791 1.21729 0.96417 0.96063 0.99045 1.24959 1.03403 0.96963 1.08591 1.82741 1.18321 1.13984 1.64459 1.22544 1.05302 0.95611 1.31356 1.16855 0.84508 0.81023 0.77608 1.90644 1.54127 1.41690 1.58600 1.45866 1.22323 1.09589 1.61291 1.19664 0.85338 0.94302 0.91792 0.87676 1.22634 0.96747 0.88139 0.93486 1.86475 1.52429 1.45402 1.52665 1.19994 0.98680 0.95835 0.94422 1.20859 0.96179 0.91080 0.99524 1.21133 1.02760 0.99986 0.93434 1.17728 1.01412 0.82864 0.90829 1.91477 1.94542 1.48984 1.77332 1.21041 1.02491 0.92644 1.01332 1.20885 0.98694 0.97480 0.93152 0.90093 0.83723 0.84502 0.77253 0.92224 0.93515 0.78040 0.84642 0.84825 0.84894 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.54 10.81 55.57 0.60 -17.94 16 2 C 0.07 1.60 5.39 -17.28 -0.09 1.51 16 3 Si 0.93 18.18 29.57 -169.99 -5.03 13.15 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.25 -5.05 7.11 56.52 0.40 -4.65 16 6 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.38 -9.96 8.51 -37.94 -0.32 -10.28 16 8 H 0.11 3.07 6.05 -52.49 -0.32 2.75 16 9 C 0.14 3.71 5.68 -106.21 -0.60 3.11 16 10 C -0.10 -2.41 9.05 -39.12 -0.35 -2.77 16 11 C -0.21 -4.43 11.07 28.86 0.32 -4.11 16 12 S -0.05 -1.07 22.25 -107.50 -2.39 -3.46 16 13 C -0.43 -10.71 6.51 -35.88 -0.23 -10.94 16 14 C 0.60 14.29 7.73 -13.04 -0.10 14.19 16 15 O -0.57 -14.73 14.11 5.13 0.07 -14.65 16 16 N -0.74 -14.00 4.97 -56.37 -0.28 -14.28 16 17 C 0.19 3.07 2.61 -69.08 -0.18 2.89 16 18 H 0.11 1.73 7.44 -51.93 -0.39 1.35 16 19 C 0.07 0.96 6.84 37.16 0.25 1.22 16 20 O -0.57 -7.30 12.06 -35.23 -0.42 -7.73 16 21 C -0.09 -1.21 4.83 -104.62 -0.51 -1.72 16 22 C -0.06 -0.77 8.06 -39.60 -0.32 -1.09 16 23 C -0.15 -1.89 10.03 -39.52 -0.40 -2.28 16 24 C 0.09 1.13 7.30 -39.42 -0.29 0.84 16 25 F -0.14 -1.83 17.27 2.25 0.04 -1.79 16 26 C -0.16 -1.78 10.03 -39.51 -0.40 -2.18 16 27 C -0.08 -0.99 9.67 -39.59 -0.38 -1.38 16 28 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 29 H 0.15 3.46 6.39 -52.49 -0.34 3.12 16 30 H 0.14 2.50 8.06 -52.48 -0.42 2.08 16 31 H 0.39 7.13 5.93 -40.82 -0.24 6.88 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.37 3.23 9.12 45.56 0.42 3.65 16 35 H 0.14 1.84 6.67 -52.49 -0.35 1.49 16 36 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.13 1.31 8.04 -52.49 -0.42 0.89 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -29.52 344.01 -8.71 -38.24 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -2.89 Total: 16.26 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -3.60 Total: -12.99 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.32 Total: -32.22 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.35 Total: -22.38 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Atomic # 16 Polarization: -1.07 SS G_CDS: -2.39 Total: -3.46 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.52 -8.71 -38.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434020341.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.976 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds