Wall clock time and date at job start Tue Mar 31 2020 19:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86804 * 119.99672 * 2 1 4 4 H 1.48496 * 109.47163 * 85.13979 * 3 2 1 5 5 H 1.48505 * 109.46942 * 205.13500 * 3 2 1 6 6 H 1.48499 * 109.47327 * 325.13518 * 3 2 1 7 7 C 1.40306 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99969 * 189.92314 * 7 2 1 9 9 C 1.40544 * 119.99778 * 9.92836 * 7 2 1 10 10 C 1.44182 * 123.71478 * 23.30874 * 9 7 2 11 11 C 1.32772 * 114.42738 * 179.76392 * 10 9 7 12 12 S 1.75468 * 111.36100 * 0.49277 * 11 10 9 13 13 C 1.39540 * 123.71232 * 203.60885 * 9 7 2 14 14 C 1.46243 * 125.22909 * 359.97438 * 13 9 7 15 15 O 1.21766 * 119.99799 * 0.02562 * 14 13 9 16 16 N 1.34780 * 120.00075 * 180.02562 * 14 13 9 17 17 C 1.46496 * 119.99806 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.47676 * 34.99743 * 17 16 14 19 19 C 1.53006 * 109.47378 * 275.00065 * 17 16 14 20 20 O 1.42899 * 109.47062 * 295.00182 * 19 17 16 21 21 C 1.50702 * 109.47132 * 155.00183 * 17 16 14 22 22 C 1.38240 * 119.97317 * 39.72434 * 21 17 16 23 23 C 1.38198 * 120.02494 * 179.76952 * 22 21 17 24 24 C 1.38451 * 119.97432 * 0.50662 * 23 22 21 25 25 F 1.35097 * 120.02793 * 179.77192 * 24 23 22 26 26 C 1.38464 * 119.94908 * 359.74154 * 24 23 22 27 27 C 1.38194 * 119.97371 * 0.02562 * 26 24 23 28 28 H 0.97001 * 119.99797 * 359.97438 * 1 2 3 29 29 H 1.08000 * 122.78643 * 0.02562 * 10 9 7 30 30 H 1.08004 * 124.31702 * 180.22824 * 11 10 9 31 31 H 0.96995 * 119.99985 * 0.02562 * 16 14 13 32 32 H 1.09004 * 109.47020 * 55.00143 * 19 17 16 33 33 H 1.08991 * 109.47555 * 175.00026 * 19 17 16 34 34 H 0.96694 * 114.00052 * 179.97438 * 20 19 17 35 35 H 1.08002 * 119.98766 * 0.02562 * 22 21 17 36 36 H 1.08001 * 120.01149 * 180.25112 * 23 22 21 37 37 H 1.08000 * 120.01343 * 179.97438 * 26 24 23 38 38 H 1.07999 * 119.99024 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.3851 2.1058 1.3950 5 1 3.5856 1.4128 -0.5947 6 1 1.4930 2.6209 -0.8003 7 6 2.0080 -1.2151 -0.0005 8 1 3.0759 -1.2221 0.1606 9 6 1.3211 -2.4230 -0.2109 10 6 0.0540 -2.5148 -0.8929 11 6 -0.4275 -3.7481 -0.9929 12 16 0.6419 -4.9152 -0.2360 13 6 1.7873 -3.6647 0.2224 14 6 3.0377 -3.8905 0.9465 15 8 3.7633 -2.9506 1.2161 16 7 3.3868 -5.1390 1.3154 17 6 4.6396 -5.3651 2.0403 18 1 4.8311 -4.5239 2.7064 19 6 5.7907 -5.4963 1.0408 20 8 5.5984 -6.6668 0.2438 21 6 4.5302 -6.6318 2.8494 22 6 3.8913 -7.7370 2.3192 23 6 3.7945 -8.9007 3.0584 24 6 4.3285 -8.9559 4.3346 25 9 4.2305 -10.0914 5.0599 26 6 4.9638 -7.8466 4.8666 27 6 5.0636 -6.6856 4.1237 28 1 -0.4850 0.8401 0.0004 29 1 -0.4586 -1.6526 -1.2930 30 1 -1.3607 -4.0001 -1.4748 31 1 2.8090 -5.8877 1.1003 32 1 5.8141 -4.6176 0.3962 33 1 6.7339 -5.5757 1.5811 34 1 6.2922 -6.8132 -0.4136 35 1 3.4712 -7.6925 1.3252 36 1 3.2988 -9.7653 2.6423 37 1 5.3804 -7.8883 5.8622 38 1 5.5594 -5.8203 4.5383 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434020341.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:26 Heat of formation + Delta-G solvation = -105.132976 kcal Electronic energy + Delta-G solvation = -25625.978092 eV Core-core repulsion = 21666.132170 eV Total energy + Delta-G solvation = -3959.845922 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.89627 -40.98338 -39.63886 -38.04301 -37.48428 -35.35525 -34.89791 -32.39641 -31.96017 -30.75572 -29.18737 -27.75191 -24.74704 -24.19059 -23.76705 -22.25133 -21.21776 -20.62631 -19.61725 -18.59609 -18.41244 -17.63450 -17.48847 -17.06308 -16.81259 -16.59418 -16.20750 -15.92124 -15.69006 -15.43767 -14.90985 -14.81109 -14.46809 -14.36467 -14.20525 -14.05903 -13.71276 -13.67115 -13.36027 -13.15255 -12.96608 -12.79360 -12.72364 -12.24909 -12.07358 -12.01032 -11.94479 -11.41463 -11.06197 -10.97062 -10.36464 -10.06253 -9.95841 -9.56858 -9.33952 -8.93266 -8.84740 -6.44204 0.09782 0.28358 0.32075 1.34196 1.35819 1.37745 1.50153 1.80210 1.98740 2.18045 2.42000 2.54972 2.71500 3.25994 3.31942 3.39675 3.58242 3.77442 3.96968 4.18117 4.33527 4.35767 4.39516 4.45227 4.55813 4.68939 4.91571 4.98464 4.99045 5.02813 5.13945 5.25087 5.29319 5.39714 5.48368 5.58644 5.77052 5.85702 5.90122 6.40907 6.59259 6.72697 6.89284 6.96290 7.73814 8.08770 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015910 B = 0.003225 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.500444 B = 8681.156713 C = 9417.602732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.035 3.965 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.264 1.264 6 H -0.250 1.250 7 C -0.415 4.415 8 H 0.087 0.913 9 C 0.113 3.887 10 C -0.129 4.129 11 C -0.193 4.193 12 S 0.003 5.997 13 C -0.466 4.466 14 C 0.595 3.405 15 O -0.599 6.599 16 N -0.724 5.724 17 C 0.189 3.811 18 H 0.094 0.906 19 C 0.078 3.922 20 O -0.573 6.573 21 C -0.099 4.099 22 C -0.067 4.067 23 C -0.154 4.154 24 C 0.083 3.917 25 F -0.146 7.146 26 C -0.150 4.150 27 C -0.083 4.083 28 H 0.300 0.700 29 H 0.141 0.859 30 H 0.175 0.825 31 H 0.397 0.603 32 H 0.031 0.969 33 H 0.077 0.923 34 H 0.393 0.607 35 H 0.129 0.871 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.019 -10.955 3.487 13.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.188 1.188 5 H -0.188 1.188 6 H -0.174 1.174 7 C -0.446 4.446 8 H 0.105 0.895 9 C 0.102 3.898 10 C -0.161 4.161 11 C -0.327 4.327 12 S 0.258 5.742 13 C -0.585 4.585 14 C 0.392 3.608 15 O -0.485 6.485 16 N -0.376 5.376 17 C 0.085 3.915 18 H 0.111 0.889 19 C -0.001 4.001 20 O -0.381 6.381 21 C -0.100 4.100 22 C -0.085 4.085 23 C -0.173 4.173 24 C 0.064 3.936 25 F -0.125 7.125 26 C -0.169 4.169 27 C -0.101 4.101 28 H 0.112 0.888 29 H 0.159 0.841 30 H 0.193 0.807 31 H 0.233 0.767 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.242 0.758 35 H 0.147 0.853 36 H 0.168 0.832 37 H 0.176 0.824 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.716 -11.824 4.267 14.252 hybrid contribution 0.308 1.756 -0.600 1.881 sum 7.024 -10.068 3.667 12.812 Atomic orbital electron populations 1.69660 1.08854 1.31884 1.31465 1.27068 0.95779 1.04904 0.90746 0.85063 0.79095 0.75175 0.79683 1.18828 1.18786 1.17375 1.20035 0.97004 0.90601 1.36973 0.89510 1.18366 0.90790 0.92419 0.88261 1.21637 0.96505 0.97105 1.00879 1.25443 1.04208 0.96187 1.06845 1.82385 1.16499 1.11931 1.63367 1.23061 1.06773 0.97022 1.31662 1.16957 0.84218 0.82038 0.77585 1.90608 1.55017 1.43064 1.59851 1.45701 1.23428 1.08035 1.60447 1.19836 0.84316 0.95189 0.92202 0.88861 1.22429 0.97213 0.87472 0.93005 1.86427 1.53804 1.44547 1.53300 1.19860 1.00179 0.94837 0.95114 1.20816 0.96703 0.91502 0.99523 1.21275 1.02531 1.00091 0.93408 1.17906 1.01627 0.83140 0.90955 1.91476 1.94570 1.49110 1.77325 1.21303 1.01537 0.91818 1.02218 1.21091 0.98274 0.98440 0.92330 0.88827 0.84133 0.80740 0.76737 0.95034 0.90480 0.75794 0.85302 0.83205 0.82412 0.82991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.31 10.81 21.89 0.24 -38.08 16 2 C 0.03 1.71 5.39 85.37 0.46 2.17 16 3 Si 0.99 37.80 29.57 68.60 2.03 39.83 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 6 H -0.25 -8.52 7.11 99.48 0.71 -7.81 16 7 C -0.42 -23.03 8.51 23.34 0.20 -22.83 16 8 H 0.09 5.11 6.05 -2.91 -0.02 5.09 16 9 C 0.11 6.14 5.68 -20.89 -0.12 6.02 16 10 C -0.13 -6.27 9.05 22.60 0.20 -6.07 16 11 C -0.19 -8.08 11.07 66.64 0.74 -7.34 16 12 S 0.00 0.10 22.25 -56.49 -1.26 -1.15 16 13 C -0.47 -23.84 6.51 24.67 0.16 -23.68 16 14 C 0.60 29.25 7.73 86.32 0.67 29.92 16 15 O -0.60 -32.75 14.11 -4.56 -0.06 -32.81 16 16 N -0.72 -27.91 4.97 -450.45 -2.24 -30.15 16 17 C 0.19 5.96 2.61 44.25 0.12 6.08 16 18 H 0.09 3.15 7.44 -2.39 -0.02 3.13 16 19 C 0.08 2.15 6.84 71.98 0.49 2.64 16 20 O -0.57 -14.26 12.06 -148.98 -1.80 -16.06 16 21 C -0.10 -2.60 4.83 -19.86 -0.10 -2.70 16 22 C -0.07 -1.70 8.06 22.26 0.18 -1.52 16 23 C -0.15 -3.49 10.03 22.31 0.22 -3.27 16 24 C 0.08 1.87 7.30 22.37 0.16 2.03 16 25 F -0.15 -3.37 17.27 44.97 0.78 -2.59 16 26 C -0.15 -3.03 10.03 22.31 0.22 -2.80 16 27 C -0.08 -1.81 9.67 22.26 0.22 -1.59 16 28 H 0.30 12.73 8.29 -92.71 -0.77 11.96 16 29 H 0.14 6.84 6.39 -2.91 -0.02 6.82 16 30 H 0.18 5.86 8.06 -2.91 -0.02 5.84 16 31 H 0.40 14.41 5.93 -92.71 -0.55 13.86 16 32 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.39 6.27 9.12 -74.06 -0.68 5.60 16 35 H 0.13 3.40 6.67 -2.91 -0.02 3.38 16 36 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 37 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 38 H 0.15 2.66 8.04 -2.91 -0.02 2.64 16 Total: -1.00 -65.95 344.01 1.43 -64.51 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: -0.08 Total: 39.44 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 3.83 Total: -22.94 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: -2.00 Total: -68.23 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -1.86 Total: -48.87 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.78 Total: -2.59 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -1.26 Total: -1.15 kcal Total: -65.95 1.43 -64.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434020341.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.622 kcal (2) G-P(sol) polarization free energy of solvation -65.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds