Wall clock time and date at job start Tue Mar 31 2020 19:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86801 * 120.00141 * 2 1 4 4 H 1.48501 * 109.47426 * 240.00965 * 3 2 1 5 5 H 1.48500 * 109.47010 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47187 * 120.00497 * 3 2 1 7 7 C 1.40304 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00492 * 189.78647 * 7 2 1 9 9 C 1.40541 * 119.99774 * 9.78715 * 7 2 1 10 10 C 1.44184 * 123.71785 * 23.62476 * 9 7 2 11 11 C 1.32757 * 114.43286 * 180.31552 * 10 9 7 12 12 S 1.75473 * 111.36442 * 359.73024 * 11 10 9 13 13 C 1.39544 * 123.71294 * 203.43673 * 9 7 2 14 14 C 1.46235 * 125.22940 * 359.97438 * 13 9 7 15 15 O 1.21762 * 120.00358 * 359.71953 * 14 13 9 16 16 N 1.34777 * 120.00123 * 179.44185 * 14 13 9 17 17 C 1.46496 * 120.00443 * 180.02562 * 16 14 13 18 18 H 1.09008 * 109.47060 * 325.00144 * 17 16 14 19 19 C 1.53000 * 109.47258 * 84.99887 * 17 16 14 20 20 O 1.42900 * 109.46933 * 65.00237 * 19 17 16 21 21 C 1.50699 * 109.47687 * 205.00218 * 17 16 14 22 22 C 1.38244 * 119.97230 * 319.72706 * 21 17 16 23 23 C 1.38198 * 120.02653 * 179.72507 * 22 21 17 24 24 C 1.38461 * 119.97355 * 0.52343 * 23 22 21 25 25 F 1.35097 * 120.02534 * 179.72911 * 24 23 22 26 26 C 1.38458 * 119.94598 * 359.74619 * 24 23 22 27 27 C 1.38195 * 119.97612 * 0.02562 * 26 24 23 28 28 H 0.97003 * 120.00034 * 359.97438 * 1 2 3 29 29 H 1.08004 * 122.78417 * 0.04403 * 10 9 7 30 30 H 1.08007 * 124.32356 * 179.76741 * 11 10 9 31 31 H 0.97004 * 119.99936 * 0.02562 * 16 14 13 32 32 H 1.09004 * 109.47052 * 185.00218 * 19 17 16 33 33 H 1.09006 * 109.47275 * 305.00281 * 19 17 16 34 34 H 0.96708 * 113.99905 * 179.97438 * 20 19 17 35 35 H 1.08007 * 119.98664 * 359.97309 * 22 21 17 36 36 H 1.07996 * 120.01368 * 180.29654 * 23 22 21 37 37 H 1.07997 * 120.00987 * 179.97438 * 26 24 23 38 38 H 1.08009 * 119.98927 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0940 1.6965 -1.2126 5 1 1.2754 2.7464 0.0006 6 1 3.0943 1.6963 1.2124 7 6 2.0080 -1.2150 -0.0005 8 1 3.0762 -1.2220 0.1584 9 6 1.3206 -2.4232 -0.2080 10 6 0.0552 -2.5168 -0.8929 11 6 -0.4327 -3.7484 -0.9792 12 16 0.6384 -4.9147 -0.2233 13 6 1.7894 -3.6649 0.2229 14 6 3.0432 -3.8903 0.9410 15 8 3.7725 -2.9509 1.2025 16 7 3.3890 -5.1371 1.3183 17 6 4.6447 -5.3629 2.0382 18 1 5.4036 -4.6721 1.6706 19 6 4.4242 -5.1294 3.5341 20 8 3.5166 -6.1101 4.0405 21 6 5.1048 -6.7803 1.8135 22 6 4.1852 -7.8125 1.8094 23 6 4.6052 -9.1120 1.5979 24 6 5.9490 -9.3813 1.4007 25 9 6.3614 -10.6519 1.1992 26 6 6.8698 -8.3473 1.4105 27 6 6.4469 -7.0480 1.6176 28 1 -0.4850 0.8401 0.0004 29 1 -0.4555 -1.6557 -1.2980 30 1 -1.3691 -4.0005 -1.4547 31 1 2.8063 -5.8851 1.1132 32 1 5.3763 -5.2102 4.0587 33 1 4.0073 -4.1342 3.6889 34 1 3.3303 -6.0229 4.9855 35 1 3.1376 -7.6028 1.9677 36 1 3.8860 -9.9176 1.5900 37 1 7.9182 -8.5562 1.2572 38 1 7.1650 -6.2413 1.6257 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434020347.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:30 Heat of formation + Delta-G solvation = -86.404545 kcal Electronic energy + Delta-G solvation = -25626.227817 eV Core-core repulsion = 21667.194021 eV Total energy + Delta-G solvation = -3959.033796 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.93667 -39.74930 -38.13342 -36.66578 -35.90493 -33.91493 -33.07943 -31.29728 -30.76192 -29.01915 -27.93203 -26.01087 -23.46043 -23.17636 -22.22222 -20.87297 -19.70264 -18.81629 -18.11817 -17.53194 -17.19340 -16.31932 -15.86466 -15.73644 -15.62445 -15.34321 -14.90498 -14.41709 -14.30667 -13.87925 -13.71167 -13.57616 -13.38689 -13.15519 -12.65513 -12.47281 -12.43967 -12.06776 -11.82041 -11.74695 -11.43131 -11.17439 -11.11233 -10.99596 -10.95197 -10.48183 -10.16817 -9.87309 -9.64670 -9.26593 -9.12622 -8.68658 -8.43348 -8.30060 -7.50831 -7.15065 -7.06569 -4.55104 1.08815 1.21788 2.14465 2.96499 2.97868 3.01710 3.12198 3.51955 3.62737 3.78010 3.83420 4.05489 4.21393 4.33021 4.51796 4.66608 4.72721 4.83734 5.21850 5.25597 5.32614 5.46279 5.54524 5.70119 5.82558 5.92214 6.03178 6.04550 6.07597 6.23650 6.47577 6.67422 6.81819 6.84728 7.14934 7.18579 7.26171 7.45902 7.68283 7.75196 8.33057 8.42008 8.57816 8.75096 9.53404 9.84337 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.016734 B = 0.003210 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.888003 B = 8720.697206 C = 9553.131658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.067 3.933 3 Si 0.926 3.074 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.377 4.377 8 H 0.112 0.888 9 C 0.142 3.858 10 C -0.100 4.100 11 C -0.205 4.205 12 S -0.050 6.050 13 C -0.429 4.429 14 C 0.602 3.398 15 O -0.567 6.567 16 N -0.737 5.737 17 C 0.195 3.805 18 H 0.105 0.895 19 C 0.069 3.931 20 O -0.565 6.565 21 C -0.089 4.089 22 C -0.058 4.058 23 C -0.154 4.154 24 C 0.091 3.909 25 F -0.145 7.145 26 C -0.156 4.156 27 C -0.084 4.084 28 H 0.289 0.711 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.393 0.607 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.374 0.626 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.432 -9.736 4.014 12.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.155 4.155 3 Si 0.749 3.251 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.408 4.408 8 H 0.129 0.871 9 C 0.131 3.869 10 C -0.132 4.132 11 C -0.339 4.339 12 S 0.205 5.795 13 C -0.548 4.548 14 C 0.400 3.600 15 O -0.451 6.451 16 N -0.391 5.391 17 C 0.089 3.911 18 H 0.123 0.877 19 C -0.011 4.011 20 O -0.370 6.370 21 C -0.089 4.089 22 C -0.076 4.076 23 C -0.173 4.173 24 C 0.072 3.928 25 F -0.123 7.123 26 C -0.175 4.175 27 C -0.102 4.102 28 H 0.100 0.900 29 H 0.162 0.838 30 H 0.155 0.845 31 H 0.227 0.773 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.220 0.780 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.705 -10.692 3.754 13.167 hybrid contribution -0.100 1.724 0.306 1.754 sum 6.606 -8.968 4.060 11.855 Atomic orbital electron populations 1.69666 1.08081 1.30478 1.31977 1.26382 0.94941 1.02578 0.91553 0.86047 0.79945 0.78365 0.80728 1.18341 1.20143 1.18274 1.20009 0.97742 0.88792 1.34277 0.87071 1.17919 0.89518 0.91761 0.87738 1.21721 0.96397 0.96059 0.99071 1.24952 1.03332 0.97018 1.08584 1.82745 1.17843 1.14058 1.64853 1.22541 1.04951 0.95632 1.31703 1.16851 0.84640 0.81070 0.77434 1.90643 1.53713 1.41571 1.59140 1.45867 1.22084 1.09865 1.61246 1.19661 0.88919 0.92176 0.90306 0.87706 1.22640 0.92222 0.92086 0.94116 1.86472 1.66927 1.54972 1.28618 1.19997 0.93510 0.95528 0.99902 1.20871 1.00495 0.90834 0.95423 1.21139 0.94070 0.98338 1.03778 1.17731 0.93267 0.78847 1.02991 1.91477 1.91063 1.37137 1.92659 1.21037 0.99680 0.92270 1.04531 1.20884 0.95271 0.96043 0.98026 0.90028 0.83754 0.84500 0.77259 0.93541 0.92152 0.78009 0.84606 0.84825 0.84900 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.54 10.82 55.57 0.60 -17.94 16 2 C 0.07 1.61 5.39 -17.28 -0.09 1.52 16 3 Si 0.93 18.18 29.57 -169.99 -5.03 13.15 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.28 -5.15 7.11 56.52 0.40 -4.74 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.38 -9.98 8.52 -37.94 -0.32 -10.31 16 8 H 0.11 3.06 6.03 -52.49 -0.32 2.75 16 9 C 0.14 3.73 5.67 -106.21 -0.60 3.13 16 10 C -0.10 -2.41 9.04 -39.13 -0.35 -2.76 16 11 C -0.20 -4.43 11.07 28.86 0.32 -4.11 16 12 S -0.05 -1.06 22.25 -107.50 -2.39 -3.46 16 13 C -0.43 -10.71 6.51 -35.88 -0.23 -10.94 16 14 C 0.60 14.29 7.73 -13.05 -0.10 14.19 16 15 O -0.57 -14.73 14.11 5.13 0.07 -14.66 16 16 N -0.74 -14.00 4.97 -56.38 -0.28 -14.28 16 17 C 0.20 3.07 2.61 -69.09 -0.18 2.89 16 18 H 0.11 1.71 7.44 -51.92 -0.39 1.33 16 19 C 0.07 0.97 6.84 37.16 0.25 1.23 16 20 O -0.57 -7.48 12.01 -35.23 -0.42 -7.91 16 21 C -0.09 -1.20 4.83 -104.62 -0.51 -1.71 16 22 C -0.06 -0.77 8.04 -39.59 -0.32 -1.09 16 23 C -0.15 -1.88 10.03 -39.51 -0.40 -2.27 16 24 C 0.09 1.12 7.30 -39.42 -0.29 0.83 16 25 F -0.14 -1.81 17.27 2.25 0.04 -1.77 16 26 C -0.16 -1.76 10.03 -39.52 -0.40 -2.16 16 27 C -0.08 -0.98 9.67 -39.60 -0.38 -1.37 16 28 H 0.29 6.18 8.29 -40.82 -0.34 5.84 16 29 H 0.15 3.45 6.41 -52.48 -0.34 3.11 16 30 H 0.14 2.50 8.06 -52.48 -0.42 2.08 16 31 H 0.39 7.13 5.96 -40.82 -0.24 6.88 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.37 3.38 9.12 45.56 0.42 3.79 16 35 H 0.14 1.85 6.67 -52.48 -0.35 1.50 16 36 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 37 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.13 1.29 8.04 -52.48 -0.42 0.87 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -29.46 344.00 -8.71 -38.17 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -2.89 Total: 16.43 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -3.60 Total: -12.93 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.32 Total: -32.22 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.35 Total: -22.56 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Atomic # 16 Polarization: -1.06 SS G_CDS: -2.39 Total: -3.46 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.46 -8.71 -38.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434020347.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.230 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds