Wall clock time and date at job start Tue Mar 31 2020 19:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38075 * 126.28708 * 2 1 4 4 C 1.47379 * 126.42139 * 0.02562 * 3 2 1 5 5 O 1.21605 * 120.00204 * 0.02562 * 4 3 2 6 6 N 1.34782 * 120.00295 * 180.02562 * 4 3 2 7 7 C 1.38807 * 120.00143 * 180.02562 * 6 4 3 8 8 N 1.29534 * 125.27089 * 179.97438 * 7 6 4 9 9 C 1.33654 * 115.66333 * 179.97438 * 8 7 6 10 10 C 1.47193 * 122.50183 * 179.97438 * 9 8 7 11 11 N 1.34781 * 119.99959 * 0.02803 * 10 9 8 12 12 O 1.21641 * 120.00245 * 180.02562 * 10 9 8 13 13 C 1.34880 * 114.99777 * 0.02562 * 9 8 7 14 14 S 1.70981 * 109.19985 * 359.97438 * 13 9 8 15 15 C 1.41305 * 107.16076 * 180.27197 * 3 2 1 16 16 N 1.30453 * 108.02554 * 359.59075 * 15 3 2 17 17 N 1.34265 * 126.30050 * 180.02562 * 2 1 3 18 18 C 1.46504 * 125.74560 * 359.94765 * 17 2 1 19 19 C 1.50694 * 109.46978 * 89.99926 * 18 17 2 20 20 H 1.08007 * 120.00370 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00091 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00012 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00010 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47300 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46944 * 120.00259 * 23 21 19 26 26 H 1.48498 * 109.46981 * 239.99821 * 23 21 19 27 27 H 1.09006 * 109.46785 * 89.98177 * 1 2 3 28 28 H 1.09000 * 109.46997 * 209.97536 * 1 2 3 29 29 H 1.08997 * 109.47322 * 329.98370 * 1 2 3 30 30 H 0.97003 * 119.99783 * 0.02562 * 6 4 3 31 31 H 0.97000 * 120.00258 * 359.97438 * 11 10 9 32 32 H 0.97001 * 119.99833 * 179.97438 * 11 10 9 33 33 H 1.07992 * 125.40291 * 179.97438 * 13 9 8 34 34 H 1.08001 * 125.98984 * 179.71519 * 15 3 2 35 35 H 1.08997 * 109.46753 * 210.00079 * 18 17 2 36 36 H 1.08996 * 109.47510 * 330.00007 * 18 17 2 37 37 H 0.96999 * 120.00294 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1130 0.0000 4 6 1.8861 2.5202 0.0005 5 8 0.6999 2.7877 0.0015 6 7 2.8003 3.5106 -0.0001 7 6 2.3877 4.8359 0.0010 8 7 3.1751 5.8645 0.0010 9 6 2.5703 7.0564 0.0016 10 6 3.3196 8.3234 0.0023 11 7 4.6673 8.3093 0.0018 12 8 2.7224 9.3831 0.0032 13 6 1.2223 7.0116 0.0026 14 16 0.7139 5.3791 0.0021 15 6 3.6592 0.6500 -0.0064 16 7 3.6342 -0.6543 -0.0011 17 7 2.3019 -1.0821 -0.0005 18 6 1.8503 -2.4758 0.0000 19 6 1.6944 -2.9537 -1.4206 20 1 1.9105 -2.2863 -2.2418 21 6 1.2769 -4.2434 -1.6722 22 7 1.0142 -5.0564 -0.6724 23 14 1.0843 -4.8361 -3.4332 24 1 1.4401 -3.7376 -4.3669 25 1 1.9837 -5.9945 -3.6667 26 1 -0.3234 -5.2477 -3.6658 27 1 -0.3633 0.0003 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5141 30 1 3.7465 3.2972 -0.0012 31 1 5.1435 7.4642 0.0013 32 1 5.1610 9.1443 0.0018 33 1 0.5678 7.8706 0.0035 34 1 4.5452 1.2677 -0.0124 35 1 2.5853 -3.0956 0.5133 36 1 0.8921 -2.5471 0.5145 37 1 0.7208 -5.9639 -0.8493 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435266304.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:14 Heat of formation + Delta-G solvation = 16.100202 kcal Electronic energy + Delta-G solvation = -24869.055704 eV Core-core repulsion = 20966.679560 eV Total energy + Delta-G solvation = -3902.376144 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.48359 -41.46720 -40.67503 -39.29459 -36.08528 -35.74810 -34.62669 -33.84286 -32.86380 -31.14383 -29.28032 -28.29413 -26.72168 -25.52248 -24.39405 -23.02982 -22.06772 -21.14643 -20.33720 -19.56164 -18.84891 -18.44197 -18.41877 -17.91467 -16.96179 -16.95449 -16.79885 -16.36201 -16.16641 -15.84220 -15.70889 -15.28509 -14.86881 -14.70995 -14.28093 -14.25220 -14.13254 -13.67923 -13.57479 -13.17076 -13.03252 -12.85776 -12.70830 -12.31712 -12.15342 -11.83648 -11.79242 -11.47619 -11.07091 -11.03785 -10.75562 -10.73501 -10.44389 -10.30878 -9.73470 -9.25552 -8.37632 -6.53242 -0.49449 -0.02864 0.40082 0.72799 0.90622 1.28228 1.34476 1.37316 1.40733 1.51567 1.78922 2.21433 2.33076 2.41270 2.62048 2.95500 3.35395 3.64116 3.69171 3.94494 4.18163 4.20813 4.28401 4.46502 4.57430 4.65053 4.80604 4.89818 4.95829 5.12128 5.17212 5.49948 5.57310 5.72708 5.75223 5.88309 5.99633 6.27559 6.54979 6.55640 6.75977 6.83081 7.18143 7.23729 8.70434 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.027304 B = 0.002258 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.239035 B =12397.057669 C =12686.909335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.163 3.837 3 C -0.329 4.329 4 C 0.615 3.385 5 O -0.532 6.532 6 N -0.606 5.606 7 C 0.254 3.746 8 N -0.483 5.483 9 C 0.003 3.997 10 C 0.599 3.401 11 N -0.818 5.818 12 O -0.578 6.578 13 C -0.266 4.266 14 S 0.299 5.701 15 C 0.086 3.914 16 N -0.333 5.333 17 N -0.336 5.336 18 C 0.266 3.734 19 C -0.553 4.553 20 H 0.054 0.946 21 C 0.025 3.975 22 N -0.916 5.916 23 Si 0.969 3.031 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.270 1.270 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.109 0.891 30 H 0.437 0.563 31 H 0.419 0.581 32 H 0.415 0.585 33 H 0.197 0.803 34 H 0.231 0.769 35 H 0.033 0.967 36 H 0.055 0.945 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.563 20.190 2.136 20.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.026 3.974 3 C -0.344 4.344 4 C 0.406 3.594 5 O -0.410 6.410 6 N -0.256 5.256 7 C -0.116 4.116 8 N -0.207 5.207 9 C -0.132 4.132 10 C 0.381 3.619 11 N -0.381 5.381 12 O -0.458 6.458 13 C -0.410 4.410 14 S 0.551 5.449 15 C -0.102 4.102 16 N -0.152 5.152 17 N -0.112 5.112 18 C 0.147 3.853 19 C -0.591 4.591 20 H 0.072 0.928 21 C -0.177 4.177 22 N -0.554 5.554 23 Si 0.793 3.207 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.128 0.872 30 H 0.279 0.721 31 H 0.251 0.749 32 H 0.247 0.753 33 H 0.214 0.786 34 H 0.247 0.753 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.490 18.802 2.204 19.094 hybrid contribution 1.034 0.549 -0.720 1.374 sum 3.523 19.351 1.484 19.725 Atomic orbital electron populations 1.20665 0.85340 1.04593 1.04424 1.21996 0.96089 0.86408 0.92927 1.19336 0.93570 0.91060 1.30453 1.17217 0.84415 0.83740 0.74043 1.90646 1.16891 1.82736 1.50746 1.42321 1.12490 0.99639 1.71199 1.24326 0.95188 0.88966 1.03089 1.66976 1.35753 0.96362 1.21632 1.19785 0.91381 0.91453 1.10587 1.17206 0.83290 0.86213 0.75157 1.43487 1.05573 1.14165 1.74863 1.90836 1.70153 1.31958 1.52885 1.27144 0.99567 1.07113 1.07189 1.85194 1.03320 0.91318 1.65023 1.24613 0.97584 0.91684 0.96318 1.77173 0.98288 1.14379 1.25373 1.49161 1.03439 1.07908 1.50648 1.19419 0.95527 0.72186 0.98164 1.21409 1.47696 0.98394 0.91592 0.92814 1.25690 0.93950 0.96064 1.02001 1.69991 1.44934 1.07597 1.32894 0.85331 0.78342 0.78198 0.78786 1.19597 1.20155 1.19507 0.89332 0.90904 0.87245 0.72107 0.74895 0.75268 0.78639 0.75306 0.94938 0.92759 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.83 9.57 71.24 0.68 -2.14 16 2 C 0.16 5.71 7.01 42.15 0.30 6.01 16 3 C -0.33 -9.54 6.13 -20.16 -0.12 -9.66 16 4 C 0.61 15.30 7.77 86.65 0.67 15.97 16 5 O -0.53 -14.81 12.34 -4.05 -0.05 -14.86 16 6 N -0.61 -11.57 5.39 -313.02 -1.69 -13.26 16 7 C 0.25 5.30 8.36 179.30 1.50 6.80 16 8 N -0.48 -9.77 10.12 -187.23 -1.89 -11.66 16 9 C 0.00 0.06 6.66 40.45 0.27 0.33 16 10 C 0.60 12.91 8.06 86.59 0.70 13.61 16 11 N -0.82 -10.90 8.87 -176.03 -1.56 -12.47 16 12 O -0.58 -16.15 17.49 -4.16 -0.07 -16.23 16 13 C -0.27 -5.36 10.55 67.05 0.71 -4.65 16 14 S 0.30 6.04 20.28 -56.49 -1.15 4.90 16 15 C 0.09 2.35 11.50 85.65 0.99 3.34 16 16 N -0.33 -12.72 12.50 -56.26 -0.70 -13.43 16 17 N -0.34 -13.87 3.56 -336.67 -1.20 -15.07 16 18 C 0.27 12.69 5.97 85.63 0.51 13.20 16 19 C -0.55 -28.64 9.39 25.60 0.24 -28.40 16 20 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 21 C 0.02 1.26 5.46 84.65 0.46 1.72 16 22 N -0.92 -49.19 13.29 21.45 0.28 -48.90 16 23 Si 0.97 40.88 29.54 68.60 2.03 42.91 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 27 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 28 H 0.07 2.26 7.05 -2.39 -0.02 2.25 16 29 H 0.11 2.99 6.50 -2.39 -0.02 2.97 16 30 H 0.44 5.80 7.77 -92.71 -0.72 5.08 16 31 H 0.42 4.32 8.31 -92.71 -0.77 3.55 16 32 H 0.41 3.89 8.93 -92.71 -0.83 3.06 16 33 H 0.20 3.48 7.99 -2.91 -0.02 3.46 16 34 H 0.23 3.55 7.50 -2.91 -0.02 3.53 16 35 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.05 2.59 7.02 -2.39 -0.02 2.57 16 37 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -66.70 344.58 -0.23 -66.93 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -1.12 Total: 15.01 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 6.90 Total: 16.12 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -6.76 Total: -114.79 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.12 Total: -31.08 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Atomic # 16 Polarization: 6.04 SS G_CDS: -1.15 Total: 4.90 kcal Total: -66.70 -0.23 -66.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435266304.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.032 kcal (2) G-P(sol) polarization free energy of solvation -66.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds