Wall clock time and date at job start Tue Mar 31 2020 18:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99886 * 2 1 4 4 O 1.20828 * 120.00434 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00217 * 179.97438 * 3 2 1 6 6 C 1.50697 * 109.47451 * 179.97438 * 5 3 2 7 7 S 1.70445 * 124.59381 * 269.97831 * 6 5 3 8 8 C 1.75497 * 92.44542 * 180.02562 * 7 6 5 9 9 C 1.32779 * 110.57681 * 359.71111 * 8 7 6 10 10 C 1.36014 * 124.58783 * 90.00571 * 6 5 3 11 11 C 1.47183 * 123.46133 * 359.97438 * 10 6 5 12 12 O 1.21663 * 120.00079 * 0.02562 * 11 10 6 13 13 N 1.34777 * 119.99889 * 180.02562 * 11 10 6 14 14 C 1.40562 * 120.00082 * 179.97438 * 13 11 10 15 15 C 1.40665 * 126.08271 * 0.03253 * 14 13 11 16 16 N 1.30901 * 108.39014 * 179.73270 * 15 14 13 17 17 N 1.40070 * 108.40965 * 359.97438 * 16 15 14 18 18 C 1.37317 * 126.06877 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99895 * 179.97438 * 18 17 16 20 20 C 1.38989 * 120.00467 * 359.97438 * 18 17 16 21 21 N 1.31294 * 119.99545 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00259 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47392 * 59.99552 * 22 20 18 24 24 H 1.48497 * 109.46836 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46764 * 299.99453 * 22 20 18 26 26 C 1.35679 * 126.08671 * 179.71100 * 14 13 11 27 27 H 1.08999 * 109.47116 * 59.99957 * 1 2 3 28 28 H 1.08995 * 109.47453 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47296 * 300.00027 * 1 2 3 30 30 H 1.09006 * 109.46596 * 59.99695 * 5 3 2 31 31 H 1.09003 * 109.46954 * 300.00689 * 5 3 2 32 32 H 1.08002 * 124.71355 * 180.02562 * 8 7 6 33 33 H 1.07997 * 123.45947 * 180.24845 * 9 8 7 34 34 H 0.96997 * 120.00080 * 0.02562 * 13 11 10 35 35 H 1.08001 * 125.80441 * 359.69042 * 15 14 13 36 36 H 0.97001 * 119.99821 * 180.02562 * 21 20 18 37 37 H 1.08006 * 126.24383 * 0.23794 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 3.9935 2.7201 -0.0002 7 16 4.2690 3.6470 -1.4038 8 6 4.6903 5.0724 -0.4707 9 6 4.6080 4.8197 0.8302 10 6 4.2121 3.4612 1.1192 11 6 4.0551 2.9346 2.4846 12 8 3.7135 1.7795 2.6556 13 7 4.2899 3.7320 3.5455 14 6 4.1394 3.2293 4.8495 15 6 3.7526 1.9214 5.1937 16 7 3.7290 1.8277 6.4991 17 7 4.0989 3.0665 7.0382 18 6 4.1943 3.3709 8.3738 19 1 4.4904 4.3628 8.6818 20 6 3.9097 2.4026 9.3294 21 7 3.5492 1.1969 8.9551 22 14 4.0388 2.8170 11.1463 23 1 3.1043 3.9249 11.4690 24 1 3.6855 1.6213 11.9530 25 1 5.4287 3.2341 11.4613 26 6 4.3475 3.9174 6.0002 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.9563 0.7806 -0.8892 31 1 3.9557 0.7809 0.8908 32 1 4.9721 6.0245 -0.8956 33 1 4.8194 5.5535 1.5939 34 1 4.5619 4.6530 3.4092 35 1 3.5147 1.1294 4.4990 36 1 3.3503 0.5212 9.6220 37 1 4.6546 4.9498 6.0803 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464523088.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:58 Heat of formation + Delta-G solvation = 2.613937 kcal Electronic energy + Delta-G solvation = -25616.180844 eV Core-core repulsion = 21680.927141 eV Total energy + Delta-G solvation = -3935.253703 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.51708 -39.94306 -38.92721 -36.88988 -36.30390 -34.34218 -33.20159 -32.35910 -30.25759 -28.73421 -27.95642 -26.81395 -25.08414 -23.82796 -21.71201 -21.18963 -20.83598 -19.61512 -19.05720 -17.68999 -17.59552 -17.23892 -16.63879 -16.30175 -16.18551 -15.44576 -15.07249 -14.64636 -14.60712 -13.96128 -13.84358 -13.65768 -13.34663 -13.15443 -12.96931 -12.83337 -12.78053 -12.52896 -12.01911 -11.70583 -11.65600 -11.41317 -11.23941 -11.13099 -10.93284 -10.78342 -10.55587 -10.49482 -10.15807 -9.19093 -9.16050 -8.98671 -8.79932 -8.50846 -8.04709 -6.68062 -6.55036 -4.21724 0.66698 1.38418 1.78124 1.97352 2.29246 2.79494 2.97325 3.05219 3.09284 3.40425 3.67070 3.81970 3.91968 4.37854 4.47964 4.69874 4.79926 4.89675 5.02922 5.03241 5.07255 5.17145 5.24612 5.33730 5.49986 5.61947 5.84542 5.92058 6.13731 6.25560 6.39971 6.48058 6.91345 6.96644 7.13292 7.24691 7.78622 7.86293 8.18397 8.28598 8.63343 8.85113 9.38394 9.67723 10.40892 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.016520 B = 0.002909 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.460025 B = 9623.128399 C =10999.690008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.475 3.525 4 O -0.501 6.501 5 C -0.053 4.053 6 C -0.146 4.146 7 S 0.181 5.819 8 C -0.227 4.227 9 C -0.108 4.108 10 C -0.134 4.134 11 C 0.562 3.438 12 O -0.537 6.537 13 N -0.612 5.612 14 C -0.060 4.060 15 C -0.030 4.030 16 N -0.260 5.260 17 N -0.142 5.142 18 C -0.323 4.323 19 H 0.116 0.884 20 C 0.046 3.954 21 N -0.770 5.770 22 Si 0.935 3.065 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.083 4.083 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.153 0.847 32 H 0.169 0.831 33 H 0.150 0.850 34 H 0.397 0.603 35 H 0.176 0.824 36 H 0.275 0.725 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.108 4.077 -19.279 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.317 3.683 4 O -0.388 6.388 5 C -0.092 4.092 6 C -0.266 4.266 7 S 0.448 5.552 8 C -0.362 4.362 9 C -0.138 4.138 10 C -0.151 4.151 11 C 0.348 3.652 12 O -0.417 6.417 13 N -0.253 5.253 14 C -0.165 4.165 15 C -0.206 4.206 16 N -0.091 5.091 17 N 0.091 4.909 18 C -0.456 4.456 19 H 0.133 0.867 20 C -0.171 4.171 21 N -0.396 5.396 22 Si 0.759 3.241 23 H -0.192 1.192 24 H -0.201 1.201 25 H -0.192 1.192 26 C -0.234 4.234 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.129 0.871 31 H 0.170 0.830 32 H 0.187 0.813 33 H 0.168 0.832 34 H 0.230 0.770 35 H 0.193 0.807 36 H 0.086 0.914 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.259 2.292 -19.599 19.734 hybrid contribution 0.225 1.824 1.617 2.447 sum 0.484 4.115 -17.982 18.454 Atomic orbital electron populations 1.23250 0.76295 1.03590 1.02538 1.86474 1.23431 1.33213 1.84276 1.23289 0.91420 0.81472 0.72146 1.90671 1.66985 1.36258 1.44904 1.19950 0.88976 0.92100 1.08205 1.23622 1.05838 0.99610 0.97543 1.82840 1.63955 1.01255 1.07124 1.25378 1.10723 1.02903 0.97194 1.21228 1.01037 0.95058 0.96430 1.20239 1.07165 0.93831 0.93910 1.17326 0.79178 0.85661 0.83076 1.90600 1.48334 1.17490 1.85236 1.42334 1.65454 1.13688 1.03842 1.17257 1.21335 0.95726 0.82211 1.24112 1.06719 0.95998 0.93754 1.78253 1.23485 1.00888 1.06511 1.44539 1.36142 1.05898 1.04345 1.19830 1.48745 0.99611 0.77392 0.86666 1.25638 0.95421 0.94750 1.01270 1.70208 1.32258 1.02069 1.35070 0.85894 0.79387 0.78601 0.80259 1.19175 1.20131 1.19156 1.21247 1.18000 0.97201 0.86986 0.92148 0.88122 0.91672 0.87058 0.82956 0.81334 0.83247 0.76986 0.80686 0.91411 0.83697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.36 -4.91 10.57 -39.25 -0.41 -5.33 16 3 C 0.47 7.16 7.93 36.01 0.29 7.44 16 4 O -0.50 -8.81 15.78 -18.75 -0.30 -9.10 16 5 C -0.05 -0.69 5.53 -29.04 -0.16 -0.85 16 6 C -0.15 -1.95 4.84 -35.11 -0.17 -2.12 16 7 S 0.18 1.82 22.97 -107.50 -2.47 -0.65 16 8 C -0.23 -2.15 11.12 28.86 0.32 -1.83 16 9 C -0.11 -1.23 9.91 -39.02 -0.39 -1.61 16 10 C -0.13 -1.98 5.98 -104.63 -0.63 -2.61 16 11 C 0.56 10.45 7.76 -12.63 -0.10 10.35 16 12 O -0.54 -11.42 11.19 5.22 0.06 -11.36 16 13 N -0.61 -11.38 5.44 -11.03 -0.06 -11.44 16 14 C -0.06 -1.40 6.90 -83.85 -0.58 -1.98 16 15 C -0.03 -0.81 10.85 -17.03 -0.18 -0.99 16 16 N -0.26 -7.63 10.40 30.80 0.32 -7.31 16 17 N -0.14 -3.92 3.74 -11.41 -0.04 -3.97 16 18 C -0.32 -8.61 10.25 -14.82 -0.15 -8.76 16 19 H 0.12 2.73 7.83 -52.48 -0.41 2.31 16 20 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 21 N -0.77 -21.60 11.81 55.50 0.66 -20.95 16 22 Si 0.93 18.98 29.55 -169.99 -5.02 13.96 16 23 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 26 C -0.08 -1.98 11.49 -16.39 -0.19 -2.17 16 27 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 30 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.15 2.22 5.94 -51.93 -0.31 1.91 16 32 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.15 1.35 7.10 -52.49 -0.37 0.97 16 34 H 0.40 5.77 7.37 -40.82 -0.30 5.47 16 35 H 0.18 4.60 5.91 -52.49 -0.31 4.29 16 36 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.15 2.87 8.06 -52.48 -0.42 2.44 16 LS Contribution 342.50 15.07 5.16 5.16 Total: -1.00 -35.68 342.50 -6.45 -42.13 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -3.37 Total: 11.41 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -0.97 Total: -2.56 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.87 Total: -43.66 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.65 Total: -25.79 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.47 Total: -0.65 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.68 -6.45 -42.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464523088.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.749 kcal (2) G-P(sol) polarization free energy of solvation -35.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds