Wall clock time and date at job start Tue Mar 31 2020 19:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.41578 * 126.13512 * 2 1 4 4 C 1.40141 * 133.36364 * 359.97438 * 3 2 1 5 5 C 1.36433 * 119.84914 * 179.97438 * 4 3 2 6 6 C 1.38942 * 120.62804 * 359.97438 * 5 4 3 7 7 C 1.37766 * 120.63262 * 0.28280 * 6 5 4 8 8 Cl 1.73598 * 120.10572 * 179.74257 * 7 6 5 9 9 C 1.39332 * 119.78755 * 359.48912 * 7 6 5 10 10 N 1.37509 * 133.18241 * 180.20617 * 9 7 6 11 11 H 0.97006 * 125.61057 * 0.27265 * 10 9 7 12 12 C 1.35874 * 126.13406 * 179.97438 * 2 1 3 13 13 C 1.47062 * 125.43038 * 0.02562 * 12 2 1 14 14 O 1.21640 * 120.00259 * 0.02562 * 13 12 2 15 15 N 1.34779 * 119.99460 * 180.02562 * 13 12 2 16 16 C 1.46501 * 119.99423 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.46888 * 179.97438 * 16 15 13 18 18 O 1.21296 * 119.99873 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00268 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00211 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00102 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99995 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99971 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99915 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47285 * 89.99783 * 24 22 20 26 26 H 1.48504 * 109.46739 * 209.99815 * 24 22 20 27 27 H 1.48496 * 109.47151 * 329.99611 * 24 22 20 28 28 H 1.08990 * 109.46710 * 90.00285 * 1 2 3 29 29 H 1.09000 * 109.47126 * 210.00210 * 1 2 3 30 30 H 1.08997 * 109.46695 * 330.00116 * 1 2 3 31 31 H 1.07995 * 120.07582 * 359.95295 * 4 3 2 32 32 H 1.08007 * 119.68625 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.68012 * 179.97438 * 6 5 4 34 34 H 0.97000 * 120.00093 * 359.97438 * 15 13 12 35 35 H 1.08994 * 109.47206 * 299.99953 * 16 15 13 36 36 H 1.08996 * 109.47132 * 60.00316 * 16 15 13 37 37 H 0.97003 * 119.99447 * 0.02562 * 19 17 16 38 38 H 0.96995 * 119.99639 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3419 1.1434 0.0000 4 6 2.0865 2.5214 -0.0005 5 6 3.1263 3.4047 0.0002 6 6 4.4398 2.9519 0.0019 7 6 4.7171 1.6024 -0.0030 8 17 6.3634 1.0518 -0.0075 9 6 3.6720 0.6810 0.0012 10 7 3.6292 -0.6934 0.0018 11 1 4.3999 -1.2825 0.0030 12 6 2.3083 -1.0974 0.0005 13 6 1.8432 -2.4925 0.0006 14 8 0.6515 -2.7364 -0.0003 15 7 2.7375 -3.5009 0.0016 16 6 2.2742 -4.8907 0.0011 17 6 3.4633 -5.8165 0.0019 18 8 4.5872 -5.3603 0.0022 19 7 3.2780 -7.1515 0.0010 20 6 4.3597 -7.9937 0.0012 21 1 5.3604 -7.5875 0.0023 22 6 4.1687 -9.3701 -0.0002 23 7 2.9510 -9.8644 -0.0011 24 14 5.6426 -10.5176 0.0007 25 1 6.0315 -10.8228 1.4010 26 1 5.2891 -11.7779 -0.7008 27 1 6.7789 -9.8645 -0.6974 28 1 -0.3632 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3632 0.8900 0.5138 31 1 1.0690 2.8832 -0.0017 32 1 2.9264 4.4661 -0.0006 33 1 5.2512 3.6647 0.0020 34 1 3.6878 -3.3063 0.0019 35 1 1.6709 -5.0729 0.8904 36 1 1.6729 -5.0729 -0.8895 37 1 2.3792 -7.5163 -0.0004 38 1 2.8177 -10.8251 -0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467838083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:35 Heat of formation + Delta-G solvation = -30.644568 kcal Electronic energy + Delta-G solvation = -24967.154855 eV Core-core repulsion = 21028.415249 eV Total energy + Delta-G solvation = -3938.739607 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.95139 -39.55014 -38.24130 -37.34979 -36.53046 -34.73331 -33.93382 -33.14085 -31.47554 -30.10797 -30.09560 -28.02621 -26.80888 -24.88868 -23.60528 -22.53393 -20.82440 -19.94323 -19.45406 -18.60739 -18.08767 -17.50768 -16.53979 -15.86092 -15.76867 -15.40563 -15.19868 -14.94368 -14.70271 -14.61053 -14.27810 -13.94916 -13.86886 -13.39421 -13.10826 -12.89485 -12.55023 -12.48620 -12.32406 -12.06623 -11.99852 -11.69616 -11.57854 -11.55886 -11.20140 -11.17922 -10.51226 -10.38591 -10.03703 -9.73095 -9.71049 -9.07512 -8.74358 -8.59192 -8.18081 -7.92504 -6.58447 -4.00768 0.39416 1.20317 1.80391 1.84342 2.62504 3.06446 3.07656 3.18440 3.22371 3.24198 3.45670 3.64830 4.04849 4.37472 4.53454 4.63240 4.73345 4.75079 4.94732 5.04878 5.09913 5.15806 5.42906 5.47018 5.70962 5.75928 5.77326 5.83057 5.89424 5.94863 6.04991 6.13902 6.29862 6.33818 6.46198 6.67792 7.04602 7.39505 7.54274 7.83566 8.13125 8.36550 8.97088 9.30561 9.77853 10.58202 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.002470 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.113926 B =11332.078493 C =12942.741972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.075 4.075 3 C -0.105 4.105 4 C -0.052 4.052 5 C -0.143 4.143 6 C -0.079 4.079 7 C -0.049 4.049 8 Cl -0.071 7.071 9 C 0.121 3.879 10 N -0.568 5.568 11 H 0.425 0.575 12 C 0.025 3.975 13 C 0.580 3.420 14 O -0.523 6.523 15 N -0.703 5.703 16 C 0.109 3.891 17 C 0.425 3.575 18 O -0.600 6.600 19 N -0.545 5.545 20 C -0.307 4.307 21 H 0.106 0.894 22 C 0.027 3.973 23 N -0.893 5.893 24 Si 0.934 3.066 25 H -0.276 1.276 26 H -0.282 1.282 27 H -0.268 1.268 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.406 0.594 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.397 0.603 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 24.003 0.016 24.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.110 4.110 4 C -0.070 4.070 5 C -0.163 4.163 6 C -0.099 4.099 7 C -0.079 4.079 8 Cl -0.042 7.042 9 C 0.009 3.991 10 N -0.172 5.172 11 H 0.264 0.736 12 C -0.084 4.084 13 C 0.366 3.634 14 O -0.400 6.400 15 N -0.356 5.356 16 C -0.018 4.018 17 C 0.211 3.789 18 O -0.487 6.487 19 N -0.180 5.180 20 C -0.436 4.436 21 H 0.124 0.876 22 C -0.176 4.176 23 N -0.532 5.532 24 Si 0.760 3.240 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.193 1.193 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.244 0.756 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.230 0.770 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.202 23.617 0.012 23.719 hybrid contribution 1.365 -1.210 -0.006 1.824 sum -0.837 22.407 0.005 22.423 Atomic orbital electron populations 1.20410 0.88183 1.03458 1.02704 1.19500 0.96222 0.89152 1.03536 1.18023 0.90821 0.93800 1.08360 1.20485 0.99772 0.90372 0.96397 1.20562 0.91374 0.99989 1.04364 1.20827 0.97877 0.92224 0.98965 1.19915 0.83568 0.92764 1.11618 1.98386 1.18606 1.90015 1.97165 1.17888 0.94293 0.83146 1.03795 1.41969 1.07378 1.05006 1.62861 0.73613 1.20055 0.82814 0.94081 1.11484 1.17074 0.86082 0.82708 0.77547 1.90806 1.15124 1.83569 1.50504 1.45611 1.10581 1.05676 1.73759 1.21025 0.96685 0.80376 1.03716 1.19681 0.89558 0.83678 0.86023 1.90495 1.24623 1.75854 1.57700 1.41785 1.10177 1.03801 1.62198 1.19730 0.88594 0.86818 1.48452 0.87645 1.25344 0.98049 0.97637 0.96612 1.69611 1.20454 1.14239 1.48943 0.85802 0.80626 0.79006 0.78551 1.20197 1.20715 1.19294 0.91057 0.89307 0.91819 0.85103 0.84920 0.84538 0.75617 0.89330 0.89335 0.76960 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 9.76 36.01 0.35 -0.62 16 2 C -0.08 -0.94 6.18 -104.19 -0.64 -1.58 16 3 C -0.10 -1.20 6.11 -106.94 -0.65 -1.85 16 4 C -0.05 -0.45 10.06 -39.52 -0.40 -0.85 16 5 C -0.14 -1.08 9.96 -39.97 -0.40 -1.47 16 6 C -0.08 -0.67 9.80 -39.49 -0.39 -1.05 16 7 C -0.05 -0.52 6.34 -39.35 -0.25 -0.77 16 8 Cl -0.07 -0.74 28.97 -51.86 -1.50 -2.24 16 9 C 0.12 1.44 7.05 -83.94 -0.59 0.85 16 10 N -0.57 -7.00 6.07 -7.34 -0.04 -7.04 16 11 H 0.42 4.83 8.12 -40.82 -0.33 4.50 16 12 C 0.03 0.34 6.97 -82.30 -0.57 -0.23 16 13 C 0.58 9.04 7.80 -12.68 -0.10 8.94 16 14 O -0.52 -9.07 14.57 5.24 0.08 -8.99 16 15 N -0.70 -11.33 5.52 -62.68 -0.35 -11.68 16 16 C 0.11 1.92 6.15 -5.19 -0.03 1.89 16 17 C 0.42 9.45 7.85 -10.99 -0.09 9.36 16 18 O -0.60 -14.92 15.24 5.54 0.08 -14.84 16 19 N -0.55 -13.19 5.29 -10.96 -0.06 -13.25 16 20 C -0.31 -8.18 9.68 -14.93 -0.14 -8.33 16 21 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 22 C 0.03 0.69 5.50 -17.46 -0.10 0.59 16 23 N -0.89 -23.43 13.05 55.50 0.72 -22.71 16 24 Si 0.93 20.26 29.55 -169.99 -5.02 15.24 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 1.10 6.32 -51.93 -0.33 0.77 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 33 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.41 6.44 6.49 -40.82 -0.26 6.17 16 35 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.40 9.19 7.90 -40.82 -0.32 8.86 16 38 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 349.82 15.07 5.27 5.27 Total: -1.00 -30.46 349.82 -8.53 -38.99 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -3.72 Total: 16.36 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -4.00 Total: 4.88 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.28 Total: -54.67 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.16 Total: -23.83 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.46 -8.53 -38.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467838083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.345 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds