Wall clock time and date at job start Tue Mar 31 2020 19:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.41578 * 126.13512 * 2 1 4 4 C 1.40141 * 133.36364 * 359.97438 * 3 2 1 5 5 C 1.36433 * 119.84914 * 179.97438 * 4 3 2 6 6 C 1.38942 * 120.62804 * 359.97438 * 5 4 3 7 7 C 1.37766 * 120.63262 * 0.28280 * 6 5 4 8 8 Cl 1.73598 * 120.10572 * 179.74257 * 7 6 5 9 9 C 1.39332 * 119.78755 * 359.48912 * 7 6 5 10 10 N 1.37509 * 133.18241 * 180.20617 * 9 7 6 11 11 H 0.97006 * 125.61057 * 0.27265 * 10 9 7 12 12 C 1.35874 * 126.13406 * 179.97438 * 2 1 3 13 13 C 1.47062 * 125.43038 * 0.02562 * 12 2 1 14 14 O 1.21640 * 120.00259 * 0.02562 * 13 12 2 15 15 N 1.34779 * 119.99460 * 180.02562 * 13 12 2 16 16 C 1.46501 * 119.99423 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.46888 * 179.97438 * 16 15 13 18 18 O 1.21296 * 119.99873 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00268 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00211 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00102 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99995 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99971 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99915 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47285 * 89.99783 * 24 22 20 26 26 H 1.48504 * 109.46739 * 209.99815 * 24 22 20 27 27 H 1.48496 * 109.47151 * 329.99611 * 24 22 20 28 28 H 1.08990 * 109.46710 * 90.00285 * 1 2 3 29 29 H 1.09000 * 109.47126 * 210.00210 * 1 2 3 30 30 H 1.08997 * 109.46695 * 330.00116 * 1 2 3 31 31 H 1.07995 * 120.07582 * 359.95295 * 4 3 2 32 32 H 1.08007 * 119.68625 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.68012 * 179.97438 * 6 5 4 34 34 H 0.97000 * 120.00093 * 359.97438 * 15 13 12 35 35 H 1.08994 * 109.47206 * 299.99953 * 16 15 13 36 36 H 1.08996 * 109.47132 * 60.00316 * 16 15 13 37 37 H 0.97003 * 119.99447 * 0.02562 * 19 17 16 38 38 H 0.96995 * 119.99639 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3419 1.1434 0.0000 4 6 2.0865 2.5214 -0.0005 5 6 3.1263 3.4047 0.0002 6 6 4.4398 2.9519 0.0019 7 6 4.7171 1.6024 -0.0030 8 17 6.3634 1.0518 -0.0075 9 6 3.6720 0.6810 0.0012 10 7 3.6292 -0.6934 0.0018 11 1 4.3999 -1.2825 0.0030 12 6 2.3083 -1.0974 0.0005 13 6 1.8432 -2.4925 0.0006 14 8 0.6515 -2.7364 -0.0003 15 7 2.7375 -3.5009 0.0016 16 6 2.2742 -4.8907 0.0011 17 6 3.4633 -5.8165 0.0019 18 8 4.5872 -5.3603 0.0022 19 7 3.2780 -7.1515 0.0010 20 6 4.3597 -7.9937 0.0012 21 1 5.3604 -7.5875 0.0023 22 6 4.1687 -9.3701 -0.0002 23 7 2.9510 -9.8644 -0.0011 24 14 5.6426 -10.5176 0.0007 25 1 6.0315 -10.8228 1.4010 26 1 5.2891 -11.7779 -0.7008 27 1 6.7789 -9.8645 -0.6974 28 1 -0.3632 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3632 0.8900 0.5138 31 1 1.0690 2.8832 -0.0017 32 1 2.9264 4.4661 -0.0006 33 1 5.2512 3.6647 0.0020 34 1 3.6878 -3.3063 0.0019 35 1 1.6709 -5.0729 0.8904 36 1 1.6729 -5.0729 -0.8895 37 1 2.3792 -7.5163 -0.0004 38 1 2.8177 -10.8251 -0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467838083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:34 Heat of formation + Delta-G solvation = -50.900744 kcal Electronic energy + Delta-G solvation = -24968.033229 eV Core-core repulsion = 21028.415249 eV Total energy + Delta-G solvation = -3939.617980 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.82859 -40.90201 -39.88735 -38.17416 -37.28811 -36.36378 -35.55488 -34.06534 -33.42607 -31.06259 -30.83879 -29.36119 -27.80657 -26.58332 -24.69983 -23.29302 -21.87498 -21.49803 -20.65088 -20.09986 -19.52932 -18.45363 -17.57240 -17.41225 -16.99896 -16.67949 -16.54051 -16.14510 -16.03491 -15.64208 -15.40262 -15.25930 -15.23641 -14.63226 -14.05090 -14.00387 -13.71351 -13.62477 -13.58297 -13.29747 -13.23128 -12.94220 -12.82840 -12.49706 -12.29931 -12.24953 -12.15488 -11.98165 -11.61243 -11.24450 -10.63192 -10.57347 -10.37588 -10.13598 -9.41555 -8.75029 -8.54916 -6.05238 -0.43676 0.46304 0.87622 1.08727 1.33189 1.40432 1.52504 1.70352 1.84915 1.86144 2.11688 2.26886 2.73072 3.03341 3.12262 3.51114 3.64855 3.80370 3.98302 4.13338 4.19136 4.34616 4.36693 4.36798 4.43784 4.62283 4.82465 4.90986 4.98870 5.02970 5.16760 5.33205 5.34765 5.36850 5.53968 5.60337 5.87175 5.92732 6.13505 6.31328 6.43474 6.87895 6.99484 7.38912 7.89208 8.61826 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.002470 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.113926 B =11332.078493 C =12942.741972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.068 4.068 3 C -0.124 4.124 4 C -0.048 4.048 5 C -0.136 4.136 6 C -0.067 4.067 7 C -0.073 4.073 8 Cl -0.078 7.078 9 C 0.108 3.892 10 N -0.572 5.572 11 H 0.423 0.577 12 C -0.006 4.006 13 C 0.584 3.416 14 O -0.545 6.545 15 N -0.706 5.706 16 C 0.122 3.878 17 C 0.430 3.570 18 O -0.627 6.627 19 N -0.556 5.556 20 C -0.338 4.338 21 H 0.085 0.915 22 C -0.009 4.009 23 N -0.914 5.914 24 Si 0.996 3.004 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.171 0.829 33 H 0.160 0.840 34 H 0.407 0.593 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.400 0.600 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.614 26.385 0.018 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 C -0.129 4.129 4 C -0.067 4.067 5 C -0.155 4.155 6 C -0.086 4.086 7 C -0.102 4.102 8 Cl -0.050 7.050 9 C -0.004 4.004 10 N -0.176 5.176 11 H 0.262 0.738 12 C -0.115 4.115 13 C 0.372 3.628 14 O -0.423 6.423 15 N -0.359 5.359 16 C -0.005 4.005 17 C 0.217 3.783 18 O -0.515 6.515 19 N -0.191 5.191 20 C -0.467 4.467 21 H 0.103 0.897 22 C -0.210 4.210 23 N -0.553 5.553 24 Si 0.819 3.181 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.196 1.196 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.177 0.823 32 H 0.188 0.812 33 H 0.178 0.822 34 H 0.244 0.756 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.234 0.766 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.573 26.014 0.015 26.141 hybrid contribution 1.465 -1.721 -0.006 2.260 sum -1.108 24.293 0.009 24.318 Atomic orbital electron populations 1.20440 0.87150 1.03818 1.03150 1.19827 0.97002 0.89266 1.01665 1.18262 0.90202 0.94859 1.09570 1.20882 1.01699 0.89102 0.95000 1.21016 0.90362 1.01703 1.02414 1.21276 0.99355 0.91610 0.96406 1.20133 0.83051 0.93498 1.13523 1.98379 1.19024 1.90259 1.97306 1.18227 0.95267 0.82940 1.03937 1.41911 1.06855 1.05445 1.63409 0.73759 1.19807 0.83797 0.93164 1.14722 1.17288 0.85612 0.83291 0.76595 1.90785 1.15817 1.84093 1.51609 1.45595 1.10767 1.05190 1.74367 1.20864 0.94500 0.80187 1.04972 1.20397 0.90473 0.83591 0.83821 1.90473 1.26391 1.76380 1.58284 1.41822 1.09825 1.04365 1.63106 1.19717 0.88536 0.87928 1.50564 0.89670 1.26122 1.00741 0.98457 0.95685 1.69672 1.21828 1.14851 1.48999 0.84882 0.77304 0.77154 0.78743 1.19528 1.19526 1.19559 0.90444 0.91262 0.89079 0.82347 0.81206 0.82194 0.75552 0.87996 0.88013 0.76560 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.79 9.76 71.24 0.70 -1.10 16 2 C -0.07 -1.65 6.18 -19.59 -0.12 -1.78 16 3 C -0.12 -2.63 6.11 -21.36 -0.13 -2.76 16 4 C -0.05 -0.67 10.06 22.31 0.22 -0.45 16 5 C -0.14 -1.47 9.96 22.02 0.22 -1.25 16 6 C -0.07 -0.92 9.80 22.33 0.22 -0.70 16 7 C -0.07 -1.45 6.34 22.42 0.14 -1.30 16 8 Cl -0.08 -1.60 28.97 -2.72 -0.08 -1.68 16 9 C 0.11 2.51 7.05 39.15 0.28 2.79 16 10 N -0.57 -14.40 6.07 -177.12 -1.08 -15.47 16 11 H 0.42 10.19 8.12 -92.70 -0.75 9.44 16 12 C -0.01 -0.17 6.97 39.92 0.28 0.11 16 13 C 0.58 18.56 7.80 86.56 0.68 19.23 16 14 O -0.54 -19.09 14.57 -4.16 -0.06 -19.15 16 15 N -0.71 -23.28 5.52 -470.46 -2.60 -25.88 16 16 C 0.12 4.33 6.15 85.63 0.53 4.86 16 17 C 0.43 19.57 7.85 87.66 0.69 20.26 16 18 O -0.63 -32.11 15.24 -3.08 -0.05 -32.16 16 19 N -0.56 -27.55 5.29 -306.98 -1.62 -29.17 16 20 C -0.34 -18.49 9.68 84.04 0.81 -17.68 16 21 H 0.09 4.92 7.16 -2.91 -0.02 4.90 16 22 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 23 N -0.91 -48.05 13.05 21.67 0.28 -47.77 16 24 Si 1.00 41.54 29.55 68.60 2.03 43.57 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 26 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 1.70 6.32 -2.39 -0.02 1.68 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 32 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 33 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.41 13.41 6.49 -92.71 -0.60 12.81 16 35 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 36 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 37 H 0.40 18.94 7.90 -92.71 -0.73 18.20 16 38 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -66.47 349.82 0.88 -65.59 By element: Atomic # 1 Polarization: 42.80 SS G_CDS: -0.92 Total: 41.88 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 4.97 Total: 20.24 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -5.01 Total: -118.30 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -0.11 Total: -51.31 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.08 Total: -1.68 kcal Total: -66.47 0.88 -65.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467838083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.691 kcal (2) G-P(sol) polarization free energy of solvation -66.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds