Wall clock time and date at job start Tue Mar 31 2020 18:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36161 * 119.85230 * 2 1 4 4 C 1.35544 * 119.25525 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.49614 * 179.97438 * 4 3 2 6 6 N 1.46493 * 109.47005 * 95.00381 * 5 4 3 7 7 C 1.34772 * 120.00109 * 179.97438 * 6 5 4 8 8 O 1.21759 * 120.00049 * 0.02562 * 7 6 5 9 9 C 1.46241 * 120.00271 * 179.97438 * 7 6 5 10 10 S 1.75665 * 125.22673 * 0.02562 * 9 7 6 11 11 C 1.75475 * 92.09041 * 179.97438 * 10 9 7 12 12 C 1.32759 * 111.36163 * 0.02562 * 11 10 9 13 13 C 1.39543 * 125.22846 * 180.02562 * 9 7 6 14 14 C 1.40543 * 123.71763 * 359.97438 * 13 9 7 15 15 H 1.08005 * 119.99759 * 335.11111 * 14 13 9 16 16 C 1.40298 * 120.00410 * 155.11410 * 14 13 9 17 17 N 1.30648 * 120.00325 * 162.49602 * 16 14 13 18 18 Si 1.86800 * 119.99708 * 342.49579 * 16 14 13 19 19 H 1.48503 * 109.46994 * 94.03364 * 18 16 14 20 20 H 1.48500 * 109.47002 * 214.03004 * 18 16 14 21 21 H 1.48492 * 109.47402 * 334.02842 * 18 16 14 22 22 C 1.40732 * 119.00116 * 0.25910 * 4 3 2 23 23 O 1.35165 * 120.16621 * 179.72539 * 22 4 3 24 24 N 1.32432 * 119.67135 * 359.49881 * 22 4 3 25 25 C 1.33275 * 120.72184 * 0.48884 * 24 22 4 26 26 O 1.21977 * 119.46905 * 179.75318 * 25 24 22 27 27 H 1.09006 * 109.47306 * 89.99537 * 1 2 3 28 28 H 1.09002 * 109.47144 * 209.99724 * 1 2 3 29 29 H 1.09005 * 109.47467 * 329.99707 * 1 2 3 30 30 H 1.08004 * 120.37557 * 0.04693 * 3 2 1 31 31 H 1.09003 * 109.47203 * 334.99893 * 5 4 3 32 32 H 1.08998 * 109.46843 * 215.00299 * 5 4 3 33 33 H 0.97005 * 120.00069 * 359.97438 * 6 5 4 34 34 H 1.07995 * 124.31556 * 179.73691 * 11 10 9 35 35 H 1.08011 * 122.78437 * 179.97438 * 12 11 10 36 36 H 0.97002 * 119.99684 * 179.97438 * 17 16 14 37 37 H 0.96696 * 114.00115 * 179.97438 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1428 1.1809 0.0000 4 6 3.4981 1.1668 -0.0005 5 6 4.2764 2.4574 -0.0011 6 7 4.6323 2.8136 1.3746 7 6 5.3355 3.9369 1.6194 8 8 5.6747 4.6560 0.6972 9 6 5.6903 4.2929 2.9927 10 16 5.2731 3.3597 4.4213 11 6 6.0734 4.5055 5.4822 12 6 6.6079 5.5083 4.7958 13 6 6.4123 5.4259 3.3697 14 6 6.8962 6.3812 2.4594 15 1 7.0852 6.1021 1.4333 16 6 7.1340 7.6972 2.8836 17 7 7.8877 8.4883 2.1675 18 14 6.3729 8.3182 4.4725 19 1 7.3382 8.1394 5.5867 20 1 6.0403 9.7586 4.3321 21 1 5.1352 7.5504 4.7617 22 6 4.1676 -0.0711 -0.0066 23 8 5.5186 -0.1126 -0.0129 24 7 3.4673 -1.1951 -0.0017 25 6 2.1348 -1.1672 -0.0007 26 8 1.5127 -2.2163 -0.0007 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6065 2.1184 0.0008 31 1 3.6663 3.2494 -0.4354 32 1 5.1846 2.3336 -0.5909 33 1 4.3618 2.2409 2.1093 34 1 6.1208 4.4098 6.5569 35 1 7.1448 6.3187 5.2666 36 1 8.0517 9.3983 2.4606 37 1 5.8845 -1.0076 -0.0164 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471369544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:48 Heat of formation + Delta-G solvation = -69.081894 kcal Electronic energy + Delta-G solvation = -25535.378576 eV Core-core repulsion = 21597.015909 eV Total energy + Delta-G solvation = -3938.362668 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.93436 -40.27003 -39.74938 -38.17499 -37.87958 -35.96507 -35.45825 -35.17121 -32.72087 -30.98137 -29.07667 -28.33386 -26.67842 -25.70565 -23.88682 -23.26141 -22.01662 -20.90294 -20.76304 -19.60890 -19.33921 -17.83425 -17.80606 -17.59685 -17.27782 -16.83820 -16.26727 -16.07988 -15.81780 -15.52614 -15.38147 -15.33297 -14.91837 -14.89439 -14.38868 -14.14411 -13.93347 -13.76206 -13.64877 -13.38156 -13.11671 -13.02301 -12.69376 -12.54567 -12.21275 -12.05489 -11.75053 -11.34024 -11.24438 -11.16254 -11.04042 -10.48896 -9.91003 -9.68509 -9.41002 -9.06163 -9.00821 -6.46964 -0.41914 0.15332 0.37952 1.20873 1.21497 1.34637 1.38111 1.47469 1.66943 1.74737 2.08443 2.15710 2.43343 2.55320 2.80631 3.15195 3.23152 3.44228 3.54966 4.03623 4.18929 4.24072 4.27332 4.43348 4.49931 4.72767 4.77778 4.82512 4.92122 5.06081 5.08743 5.21330 5.22346 5.38636 5.72028 5.83858 6.12348 6.26774 6.53054 6.57879 6.65503 6.93545 6.97481 7.77366 8.04172 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.019982 B = 0.002944 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.893202 B = 9509.935232 C = 9797.323370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.522 5.522 3 C 0.249 3.751 4 C -0.278 4.278 5 C 0.201 3.799 6 N -0.729 5.729 7 C 0.593 3.407 8 O -0.598 6.598 9 C -0.457 4.457 10 S 0.046 5.954 11 C -0.156 4.156 12 C -0.198 4.198 13 C 0.097 3.903 14 C -0.411 4.411 15 H 0.069 0.931 16 C 0.041 3.959 17 N -0.815 5.815 18 Si 0.971 3.029 19 H -0.238 1.238 20 H -0.271 1.271 21 H -0.246 1.246 22 C 0.474 3.526 23 O -0.440 6.440 24 N -0.647 5.647 25 C 0.645 3.355 26 O -0.584 6.584 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.131 0.869 30 H 0.236 0.764 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.397 0.603 34 H 0.192 0.808 35 H 0.136 0.864 36 H 0.303 0.697 37 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.528 -8.509 1.941 15.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.235 5.235 3 C 0.112 3.888 4 C -0.287 4.287 5 C 0.076 3.924 6 N -0.382 5.382 7 C 0.388 3.612 8 O -0.483 6.483 9 C -0.575 4.575 10 S 0.304 5.696 11 C -0.291 4.291 12 C -0.231 4.231 13 C 0.086 3.914 14 C -0.441 4.441 15 H 0.087 0.913 16 C -0.179 4.179 17 N -0.439 5.439 18 Si 0.791 3.209 19 H -0.163 1.163 20 H -0.197 1.197 21 H -0.170 1.170 22 C 0.275 3.725 23 O -0.236 6.236 24 N -0.406 5.406 25 C 0.347 3.653 26 O -0.463 6.463 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.149 0.851 30 H 0.252 0.748 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.231 0.769 34 H 0.209 0.791 35 H 0.153 0.847 36 H 0.114 0.886 37 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -13.119 -10.099 1.377 16.613 hybrid contribution 0.990 1.377 0.038 1.696 sum -12.128 -8.722 1.414 15.006 Atomic orbital electron populations 1.22554 0.73469 1.06722 1.05739 1.46443 1.12064 1.06314 1.58714 1.23023 0.91251 0.91765 0.82763 1.19313 0.93440 0.93686 1.22227 1.19527 0.98019 0.91173 0.83637 1.45707 1.58739 1.25021 1.08701 1.16964 0.76898 0.80113 0.87189 1.90705 1.57787 1.53224 1.46560 1.23039 1.28936 1.10437 0.95126 1.82487 1.61649 1.28747 0.96760 1.25537 1.01794 0.97887 1.03891 1.21448 1.06359 1.01853 0.93473 1.18196 0.89028 0.92693 0.91500 1.19604 1.32021 0.94020 0.98497 0.91259 1.27337 0.91982 0.96441 1.02143 1.69627 1.25689 1.08974 1.39635 0.85525 0.81099 0.77401 0.76857 1.16263 1.19741 1.16955 1.20407 0.84805 0.89138 0.78153 1.85112 1.14411 1.38650 1.85397 1.69584 1.06821 1.28491 1.35684 1.17512 0.84716 0.83781 0.79318 1.90957 1.67254 1.31449 1.56597 0.88685 0.89990 0.85087 0.74767 0.89465 0.92138 0.76861 0.79131 0.84692 0.88585 0.71002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 10.38 127.77 1.33 1.83 16 2 N -0.52 -8.83 2.99 -681.23 -2.04 -10.87 16 3 C 0.25 3.24 10.04 83.40 0.84 4.08 16 4 C -0.28 -5.53 5.25 -19.88 -0.10 -5.63 16 5 C 0.20 5.25 5.57 85.64 0.48 5.73 16 6 N -0.73 -24.03 5.54 -471.22 -2.61 -26.64 16 7 C 0.59 27.02 7.76 86.32 0.67 27.69 16 8 O -0.60 -32.54 14.47 -4.54 -0.07 -32.61 16 9 C -0.46 -21.08 6.51 24.67 0.16 -20.92 16 10 S 0.05 1.59 22.25 -56.49 -1.26 0.34 16 11 C -0.16 -5.33 11.07 66.64 0.74 -4.59 16 12 C -0.20 -8.21 7.55 22.60 0.17 -8.04 16 13 C 0.10 4.85 5.27 -20.89 -0.11 4.74 16 14 C -0.41 -23.24 9.00 23.33 0.21 -23.03 16 15 H 0.07 4.55 6.29 -2.91 -0.02 4.53 16 16 C 0.04 2.09 5.48 85.37 0.47 2.56 16 17 N -0.82 -42.84 13.92 21.89 0.30 -42.54 16 18 Si 0.97 38.10 24.53 68.60 1.68 39.79 16 19 H -0.24 -8.24 6.64 99.48 0.66 -7.58 16 20 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.25 -9.78 6.73 99.48 0.67 -9.11 16 22 C 0.47 11.00 7.89 85.21 0.67 11.67 16 23 O -0.44 -9.41 12.79 -84.43 -1.08 -10.49 16 24 N -0.65 -17.80 10.40 -438.80 -4.56 -22.36 16 25 C 0.64 17.85 8.34 179.58 1.50 19.35 16 26 O -0.58 -20.41 16.72 -5.24 -0.09 -20.50 16 27 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.08 1.08 7.38 -2.39 -0.02 1.06 16 29 H 0.13 0.14 8.03 -2.38 -0.02 0.12 16 30 H 0.24 0.75 8.06 -2.91 -0.02 0.72 16 31 H 0.09 2.07 8.06 -2.39 -0.02 2.05 16 32 H 0.06 1.85 7.76 -2.39 -0.02 1.83 16 33 H 0.40 11.68 7.54 -92.70 -0.70 10.98 16 34 H 0.19 4.67 8.06 -2.91 -0.02 4.65 16 35 H 0.14 5.23 4.55 -2.91 -0.01 5.21 16 36 H 0.30 13.88 8.29 -92.71 -0.77 13.11 16 37 H 0.43 5.76 8.98 -74.06 -0.66 5.10 16 Total: -1.00 -83.48 335.31 -2.98 -86.46 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: -0.27 Total: 23.98 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 7.01 Total: 15.45 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -8.91 Total: -102.41 kcal Atomic # 8 Polarization: -62.36 SS G_CDS: -1.23 Total: -63.60 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.68 Total: 39.79 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -1.26 Total: 0.34 kcal Total: -83.48 -2.98 -86.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471369544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.376 kcal (2) G-P(sol) polarization free energy of solvation -83.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds