Wall clock time and date at job start Tue Mar 31 2020 18:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35801 * 116.99777 * 2 1 4 4 N 1.29738 * 121.58790 * 0.02562 * 3 2 1 5 5 S 1.69435 * 108.07183 * 179.97438 * 4 3 2 6 6 C 1.71993 * 96.18077 * 0.02562 * 5 4 3 7 7 O 1.35353 * 127.30463 * 180.02562 * 6 5 4 8 8 C 1.42898 * 116.99814 * 359.97438 * 7 6 5 9 9 C 1.38859 * 105.39189 * 359.97438 * 6 5 4 10 10 C 1.46636 * 123.23805 * 179.97438 * 9 6 5 11 11 O 1.21691 * 120.00037 * 270.03006 * 10 9 6 12 12 N 1.34772 * 120.00109 * 90.02186 * 10 9 6 13 13 C 1.39174 * 120.00045 * 174.84992 * 12 10 9 14 14 C 1.39710 * 119.57623 * 185.32739 * 13 12 10 15 15 C 1.38645 * 119.49240 * 180.02562 * 14 13 12 16 16 C 1.38351 * 118.67136 * 0.02562 * 15 14 13 17 17 C 1.40571 * 119.13759 * 0.02562 * 16 15 14 18 18 C 1.41338 * 119.78919 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99755 * 359.97438 * 18 17 16 20 20 C 1.40027 * 120.00134 * 179.97438 * 18 17 16 21 21 N 1.30740 * 120.00126 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99779 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47190 * 60.00461 * 22 20 18 24 24 H 1.48500 * 109.47203 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47170 * 300.00354 * 22 20 18 26 26 N 1.31921 * 119.57982 * 5.06521 * 13 12 10 27 27 H 1.08994 * 109.47144 * 300.00734 * 1 2 3 28 28 H 1.09002 * 109.47051 * 60.00319 * 1 2 3 29 29 H 1.08997 * 109.46850 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46922 * 299.99746 * 8 7 6 31 31 H 1.08994 * 109.47202 * 60.00230 * 8 7 6 32 32 H 1.09003 * 109.47065 * 179.97438 * 8 7 6 33 33 H 0.96998 * 120.00132 * 354.85966 * 12 10 9 34 34 H 1.08001 * 120.25303 * 359.97438 * 14 13 12 35 35 H 1.07996 * 120.66047 * 180.02562 * 15 14 13 36 36 H 1.08005 * 120.43133 * 179.97438 * 16 15 14 37 37 H 0.96998 * 120.00151 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 7 1.3693 2.3172 0.0005 5 16 2.4700 3.6054 0.0010 6 6 3.8903 2.6353 -0.0002 7 8 5.1749 3.0617 0.0002 8 6 5.3895 4.4745 0.0011 9 6 3.4396 1.3219 -0.0004 10 6 4.3387 0.1636 -0.0019 11 8 4.7112 -0.3162 -1.0564 12 7 4.7528 -0.3696 1.1646 13 6 5.5182 -1.5320 1.1656 14 6 5.8483 -2.1392 2.3797 15 6 6.6113 -3.2968 2.3787 16 6 7.0253 -3.8179 1.1658 17 6 6.6614 -3.1598 -0.0218 18 6 7.0773 -3.6798 -1.2685 19 1 7.6731 -4.5798 -1.3065 20 6 6.7168 -3.0282 -2.4544 21 7 5.9960 -1.9385 -2.4084 22 14 7.2672 -3.7152 -4.1020 23 1 6.7294 -5.0891 -4.2700 24 1 6.7593 -2.8473 -5.1947 25 1 8.7509 -3.7549 -4.1510 26 7 5.9182 -2.0493 0.0198 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 4.9361 4.9114 -0.8887 31 1 4.9361 4.9102 0.8913 32 1 6.4601 4.6794 0.0018 33 1 4.5173 0.0567 2.0034 34 1 5.5125 -1.7096 3.3120 35 1 6.8771 -3.7820 3.3062 36 1 7.6211 -4.7181 1.1319 37 1 5.7466 -1.4869 -3.2298 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471519117.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:15 Heat of formation + Delta-G solvation = 12.040153 kcal Electronic energy + Delta-G solvation = -26521.849277 eV Core-core repulsion = 22587.004325 eV Total energy + Delta-G solvation = -3934.844952 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.46202 -39.22634 -38.85303 -37.30433 -36.08308 -34.00064 -32.90681 -30.99779 -30.21907 -28.91381 -28.16201 -27.25294 -25.54559 -24.36422 -22.45594 -21.38101 -20.82846 -19.86038 -18.72922 -17.90344 -17.45848 -16.65555 -16.60181 -16.29362 -15.95920 -15.83878 -14.75574 -14.63176 -14.38259 -14.26577 -13.67916 -13.53318 -13.45053 -13.12017 -12.74566 -12.59310 -12.02228 -12.00404 -11.90356 -11.81272 -11.18325 -11.09525 -10.99352 -10.92241 -10.90894 -10.60410 -10.40613 -9.89970 -9.58818 -9.18344 -8.94190 -8.80592 -8.40008 -7.89741 -7.15338 -6.88672 -6.06507 -4.33259 0.60056 0.83916 1.47743 2.27695 2.40487 2.82485 3.12144 3.21226 3.22826 3.32782 3.44363 3.72497 4.00887 4.12043 4.66605 4.76342 4.94180 5.03393 5.12307 5.14692 5.21727 5.31489 5.46544 5.56085 6.08458 6.12611 6.18385 6.48842 6.55920 6.75199 6.90371 6.91724 7.08967 7.30192 7.62339 7.69745 7.87767 8.12430 8.26881 8.52860 8.81073 9.11324 9.31648 10.31912 10.55588 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011748 B = 0.004157 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.805079 B = 6734.437545 C = 7051.430668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.277 6.277 3 C 0.376 3.624 4 N -0.537 5.537 5 S 0.253 5.747 6 C 0.083 3.917 7 O -0.248 6.248 8 C 0.013 3.987 9 C -0.258 4.258 10 C 0.559 3.441 11 O -0.390 6.390 12 N -0.654 5.654 13 C 0.376 3.624 14 C -0.356 4.356 15 C -0.036 4.036 16 C -0.306 4.306 17 C 0.272 3.728 18 C -0.426 4.426 19 H 0.082 0.918 20 C 0.058 3.942 21 N -0.655 5.655 22 Si 0.895 3.105 23 H -0.267 1.267 24 H -0.279 1.279 25 H -0.267 1.267 26 N -0.473 5.473 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.398 0.602 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.691 14.026 4.671 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.182 6.182 3 C 0.164 3.836 4 N -0.382 5.382 5 S 0.397 5.603 6 C -0.093 4.093 7 O -0.157 6.157 8 C -0.083 4.083 9 C -0.279 4.279 10 C 0.337 3.663 11 O -0.252 6.252 12 N -0.300 5.300 13 C 0.137 3.863 14 C -0.381 4.381 15 C -0.060 4.060 16 C -0.329 4.329 17 C 0.147 3.853 18 C -0.456 4.456 19 H 0.100 0.900 20 C -0.171 4.171 21 N -0.274 5.274 22 Si 0.720 3.280 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.192 1.192 26 N -0.192 5.192 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.232 0.768 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.878 15.421 2.855 18.022 hybrid contribution 1.021 -1.544 0.593 1.944 sum -7.857 13.877 3.448 16.315 Atomic orbital electron populations 1.23022 0.76682 1.03862 1.02339 1.86438 1.22858 1.21781 1.87092 1.19301 0.87961 0.85272 0.91113 1.76253 1.23913 0.99864 1.38169 1.83923 0.88988 1.13691 1.73733 1.24533 0.90650 0.96730 0.97390 1.86048 1.17659 1.25689 1.86301 1.23536 1.05158 0.77166 1.02453 1.18952 0.92158 0.94059 1.22698 1.17029 0.81402 0.82380 0.85534 1.91264 1.49303 1.55791 1.28874 1.43242 1.52528 1.25797 1.08447 1.18570 0.90465 0.86131 0.91155 1.20483 1.18006 1.04456 0.95190 1.20542 0.94987 0.94116 0.96370 1.21608 1.12926 1.04853 0.93506 1.18375 0.87661 0.87123 0.92163 1.19535 1.27872 1.08758 0.89463 0.90022 1.26172 0.95225 0.95149 1.00555 1.70298 1.18593 1.09887 1.28614 0.86597 0.79829 0.79759 0.81845 1.19187 1.20446 1.19207 1.68707 1.15658 1.12986 1.21888 0.92092 0.92066 0.87848 0.91431 0.91456 0.86371 0.76846 0.89115 0.88665 0.88611 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.46 101.05 1.06 1.49 16 2 O -0.28 -4.76 10.21 -19.12 -0.20 -4.96 16 3 C 0.38 6.35 7.44 -17.83 -0.13 6.22 16 4 N -0.54 -7.92 11.03 29.52 0.33 -7.60 16 5 S 0.25 2.99 22.67 -107.50 -2.44 0.55 16 6 C 0.08 1.23 7.33 30.96 0.23 1.46 16 7 O -0.25 -3.51 10.48 -17.75 -0.19 -3.69 16 8 C 0.01 0.10 10.35 101.05 1.05 1.15 16 9 C -0.26 -4.70 5.63 -105.68 -0.60 -5.30 16 10 C 0.56 12.70 7.06 -12.87 -0.09 12.60 16 11 O -0.39 -10.70 12.86 5.20 0.07 -10.64 16 12 N -0.65 -14.23 5.37 -12.60 -0.07 -14.30 16 13 C 0.38 9.62 7.43 -155.04 -1.15 8.47 16 14 C -0.36 -8.29 9.96 -38.88 -0.39 -8.68 16 15 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 16 C -0.31 -7.88 9.83 -38.66 -0.38 -8.26 16 17 C 0.27 7.85 6.55 -85.00 -0.56 7.29 16 18 C -0.43 -11.98 9.14 -37.73 -0.34 -12.33 16 19 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 20 C 0.06 1.57 5.50 -17.35 -0.10 1.48 16 21 N -0.66 -18.82 8.98 55.55 0.50 -18.32 16 22 Si 0.90 19.75 29.56 -169.99 -5.02 14.72 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 N -0.47 -13.79 5.73 -10.27 -0.06 -13.85 16 27 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 31 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 32 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.40 7.04 8.68 -40.82 -0.35 6.69 16 34 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 37 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -35.96 342.80 -7.42 -43.38 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -3.70 Total: 5.18 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -1.80 Total: 4.35 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.70 Total: -54.06 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.31 Total: -19.28 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -2.44 Total: 0.55 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.96 -7.42 -43.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471519117.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.416 kcal (2) G-P(sol) polarization free energy of solvation -35.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds