Wall clock time and date at job start Tue Mar 31 2020 18:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35801 * 116.99777 * 2 1 4 4 N 1.29738 * 121.58790 * 0.02562 * 3 2 1 5 5 S 1.69435 * 108.07183 * 179.97438 * 4 3 2 6 6 C 1.71993 * 96.18077 * 0.02562 * 5 4 3 7 7 O 1.35353 * 127.30463 * 180.02562 * 6 5 4 8 8 C 1.42898 * 116.99814 * 359.97438 * 7 6 5 9 9 C 1.38859 * 105.39189 * 359.97438 * 6 5 4 10 10 C 1.46636 * 123.23805 * 179.97438 * 9 6 5 11 11 O 1.21691 * 120.00037 * 270.03006 * 10 9 6 12 12 N 1.34772 * 120.00109 * 90.02186 * 10 9 6 13 13 C 1.39174 * 120.00045 * 174.84992 * 12 10 9 14 14 C 1.39710 * 119.57623 * 185.32739 * 13 12 10 15 15 C 1.38645 * 119.49240 * 180.02562 * 14 13 12 16 16 C 1.38351 * 118.67136 * 0.02562 * 15 14 13 17 17 C 1.40571 * 119.13759 * 0.02562 * 16 15 14 18 18 C 1.41338 * 119.78919 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99755 * 359.97438 * 18 17 16 20 20 C 1.40027 * 120.00134 * 179.97438 * 18 17 16 21 21 N 1.30740 * 120.00126 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99779 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47190 * 60.00461 * 22 20 18 24 24 H 1.48500 * 109.47203 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47170 * 300.00354 * 22 20 18 26 26 N 1.31921 * 119.57982 * 5.06521 * 13 12 10 27 27 H 1.08994 * 109.47144 * 300.00734 * 1 2 3 28 28 H 1.09002 * 109.47051 * 60.00319 * 1 2 3 29 29 H 1.08997 * 109.46850 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46922 * 299.99746 * 8 7 6 31 31 H 1.08994 * 109.47202 * 60.00230 * 8 7 6 32 32 H 1.09003 * 109.47065 * 179.97438 * 8 7 6 33 33 H 0.96998 * 120.00132 * 354.85966 * 12 10 9 34 34 H 1.08001 * 120.25303 * 359.97438 * 14 13 12 35 35 H 1.07996 * 120.66047 * 180.02562 * 15 14 13 36 36 H 1.08005 * 120.43133 * 179.97438 * 16 15 14 37 37 H 0.96998 * 120.00151 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 7 1.3693 2.3172 0.0005 5 16 2.4700 3.6054 0.0010 6 6 3.8903 2.6353 -0.0002 7 8 5.1749 3.0617 0.0002 8 6 5.3895 4.4745 0.0011 9 6 3.4396 1.3219 -0.0004 10 6 4.3387 0.1636 -0.0019 11 8 4.7112 -0.3162 -1.0564 12 7 4.7528 -0.3696 1.1646 13 6 5.5182 -1.5320 1.1656 14 6 5.8483 -2.1392 2.3797 15 6 6.6113 -3.2968 2.3787 16 6 7.0253 -3.8179 1.1658 17 6 6.6614 -3.1598 -0.0218 18 6 7.0773 -3.6798 -1.2685 19 1 7.6731 -4.5798 -1.3065 20 6 6.7168 -3.0282 -2.4544 21 7 5.9960 -1.9385 -2.4084 22 14 7.2672 -3.7152 -4.1020 23 1 6.7294 -5.0891 -4.2700 24 1 6.7593 -2.8473 -5.1947 25 1 8.7509 -3.7549 -4.1510 26 7 5.9182 -2.0493 0.0198 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 4.9361 4.9114 -0.8887 31 1 4.9361 4.9102 0.8913 32 1 6.4601 4.6794 0.0018 33 1 4.5173 0.0567 2.0034 34 1 5.5125 -1.7096 3.3120 35 1 6.8771 -3.7820 3.3062 36 1 7.6211 -4.7181 1.1319 37 1 5.7466 -1.4869 -3.2298 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471519117.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:14 Heat of formation + Delta-G solvation = -15.444722 kcal Electronic energy + Delta-G solvation = -26523.041111 eV Core-core repulsion = 22587.004325 eV Total energy + Delta-G solvation = -3936.036786 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.73859 -40.60268 -40.23794 -39.08431 -37.31060 -35.91209 -34.82812 -32.35812 -32.10340 -30.74313 -29.11396 -28.10159 -27.49479 -25.71545 -24.01719 -23.22732 -22.37060 -21.25243 -20.15647 -19.47397 -18.83774 -18.07935 -17.82281 -17.71993 -17.41398 -16.83825 -16.46970 -16.25779 -15.81971 -15.64971 -15.50850 -15.24371 -14.82196 -14.50244 -14.35479 -13.86689 -13.72181 -13.28686 -12.92801 -12.85241 -12.79999 -12.72752 -12.56443 -12.32282 -12.26310 -12.10876 -12.01320 -11.78843 -11.49254 -10.87377 -10.84572 -10.00278 -9.89417 -9.49544 -9.10475 -8.82788 -8.02990 -6.40959 -0.54767 -0.24993 0.39643 0.90988 1.03545 1.26068 1.39303 1.42301 1.51900 1.53586 1.98120 2.27266 2.38029 2.48172 3.00302 3.71434 3.92695 4.05584 4.09080 4.16473 4.22235 4.25095 4.32496 4.40749 4.61531 4.63575 4.74449 4.88545 4.97202 4.97983 5.06114 5.28348 5.56301 5.69399 5.84907 5.93296 5.99148 6.14755 6.36903 6.69849 6.84307 7.08043 7.60164 8.35244 8.58356 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011748 B = 0.004157 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.805079 B = 6734.437545 C = 7051.430668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.311 6.311 3 C 0.371 3.629 4 N -0.552 5.552 5 S 0.357 5.643 6 C 0.090 3.910 7 O -0.275 6.275 8 C -0.004 4.004 9 C -0.303 4.303 10 C 0.559 3.441 11 O -0.449 6.449 12 N -0.645 5.645 13 C 0.350 3.650 14 C -0.345 4.345 15 C -0.033 4.033 16 C -0.326 4.326 17 C 0.237 3.763 18 C -0.465 4.465 19 H 0.088 0.912 20 C 0.010 3.990 21 N -0.694 5.694 22 Si 0.976 3.024 23 H -0.259 1.259 24 H -0.276 1.276 25 H -0.257 1.257 26 N -0.509 5.509 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.136 0.864 33 H 0.416 0.584 34 H 0.130 0.870 35 H 0.139 0.861 36 H 0.107 0.893 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.172 15.870 5.814 18.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.217 6.217 3 C 0.159 3.841 4 N -0.397 5.397 5 S 0.501 5.499 6 C -0.087 4.087 7 O -0.184 6.184 8 C -0.097 4.097 9 C -0.324 4.324 10 C 0.340 3.660 11 O -0.314 6.314 12 N -0.292 5.292 13 C 0.112 3.888 14 C -0.370 4.370 15 C -0.057 4.057 16 C -0.349 4.349 17 C 0.111 3.889 18 C -0.496 4.496 19 H 0.106 0.894 20 C -0.215 4.215 21 N -0.313 5.313 22 Si 0.796 3.204 23 H -0.183 1.183 24 H -0.201 1.201 25 H -0.182 1.182 26 N -0.228 5.228 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.137 0.863 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.154 0.846 33 H 0.253 0.747 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.125 0.875 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.375 17.302 4.064 20.094 hybrid contribution 1.146 -1.889 0.447 2.255 sum -8.228 15.413 4.511 18.044 Atomic orbital electron populations 1.23270 0.74526 1.05260 1.03169 1.86380 1.25247 1.22775 1.87276 1.19100 0.87458 0.85606 0.91975 1.76049 1.25383 1.00236 1.38047 1.83532 0.85293 1.10134 1.70966 1.24727 0.92141 0.96661 0.95130 1.86037 1.17541 1.29367 1.85476 1.24027 1.06966 0.74168 1.04583 1.18643 0.92247 0.93732 1.27756 1.17616 0.80861 0.82825 0.84716 1.91236 1.51582 1.57979 1.30638 1.43249 1.51666 1.24818 1.09495 1.19099 0.90925 0.87339 0.91436 1.20955 1.16313 1.03885 0.95868 1.21023 0.93642 0.93805 0.97192 1.21812 1.13818 1.05530 0.93781 1.18901 0.88398 0.87879 0.93721 1.19890 1.29496 1.09782 0.90439 0.89360 1.27082 0.94857 0.95210 1.04371 1.70537 1.20148 1.11423 1.29156 0.85379 0.79610 0.79000 0.76383 1.18337 1.20083 1.18164 1.68669 1.16509 1.13642 1.24005 0.90697 0.91687 0.86264 0.89718 0.88749 0.84640 0.74743 0.85227 0.84296 0.87483 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.46 113.37 1.19 1.94 16 2 O -0.31 -10.96 10.21 -91.32 -0.93 -11.89 16 3 C 0.37 12.53 7.44 85.39 0.64 13.17 16 4 N -0.55 -15.42 11.03 -174.55 -1.92 -17.34 16 5 S 0.36 7.40 22.67 -56.49 -1.28 6.12 16 6 C 0.09 2.59 7.33 67.97 0.50 3.09 16 7 O -0.28 -7.47 10.48 -86.43 -0.91 -8.38 16 8 C 0.00 -0.05 10.35 113.37 1.17 1.13 16 9 C -0.30 -11.21 5.63 -20.55 -0.12 -11.32 16 10 C 0.56 26.51 7.06 86.44 0.61 27.12 16 11 O -0.45 -26.16 12.86 -4.32 -0.06 -26.21 16 12 N -0.64 -28.71 5.37 -311.99 -1.68 -30.39 16 13 C 0.35 18.32 7.43 133.29 0.99 19.31 16 14 C -0.34 -15.64 9.96 22.72 0.23 -15.42 16 15 C -0.03 -1.47 10.15 22.39 0.23 -1.24 16 16 C -0.33 -17.02 9.83 22.87 0.22 -16.79 16 17 C 0.24 14.21 6.55 40.19 0.26 14.47 16 18 C -0.47 -27.37 9.14 23.47 0.21 -27.15 16 19 H 0.09 4.81 7.85 -2.91 -0.02 4.79 16 20 C 0.01 0.56 5.50 85.29 0.47 1.03 16 21 N -0.69 -42.13 8.98 21.84 0.20 -41.93 16 22 Si 0.98 42.16 29.56 68.60 2.03 44.19 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 26 N -0.51 -30.94 5.73 -186.39 -1.07 -32.01 16 27 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.08 0.85 8.11 -2.39 -0.02 0.83 16 31 H 0.09 0.75 8.10 -2.39 -0.02 0.73 16 32 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.42 14.69 8.68 -92.71 -0.80 13.89 16 34 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 35 H 0.14 4.99 8.06 -2.91 -0.02 4.96 16 36 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 37 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 Total: -1.00 -84.20 342.80 1.32 -82.89 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.34 Total: 25.63 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 6.60 Total: 9.34 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -4.47 Total: -121.68 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -1.89 Total: -46.48 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 7.40 SS G_CDS: -1.28 Total: 6.12 kcal Total: -84.20 1.32 -82.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471519117.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.440 kcal (2) G-P(sol) polarization free energy of solvation -84.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds