Wall clock time and date at job start Tue Mar 31 2020 18:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35910 * 116.99611 * 2 1 4 4 C 1.38870 * 119.98487 * 0.02562 * 3 2 1 5 5 C 1.38247 * 120.24797 * 180.02562 * 4 3 2 6 6 C 1.38006 * 120.20685 * 359.73610 * 5 4 3 7 7 C 1.39615 * 119.96045 * 0.49471 * 6 5 4 8 8 C 1.47756 * 120.12124 * 179.78648 * 7 6 5 9 9 N 1.31060 * 126.29655 * 179.67757 * 8 7 6 10 10 N 1.28648 * 109.42053 * 179.80499 * 9 8 7 11 11 C 1.31322 * 109.43685 * 0.38411 * 10 9 8 12 12 S 1.76195 * 126.28885 * 179.88665 * 11 10 9 13 13 C 1.80996 * 99.99998 * 359.68927 * 12 11 10 14 14 C 1.50706 * 109.47276 * 179.97438 * 13 12 11 15 15 O 1.21297 * 119.99667 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00081 * 179.72626 * 14 13 12 17 17 C 1.37095 * 119.99878 * 180.02562 * 16 14 13 18 18 H 1.08004 * 120.00160 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00380 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99401 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00554 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46847 * 89.99945 * 21 19 17 23 23 H 1.48493 * 109.47164 * 210.00376 * 21 19 17 24 24 H 1.48502 * 109.46888 * 330.00260 * 21 19 17 25 25 O 1.34669 * 107.42139 * 359.62360 * 11 10 9 26 26 C 1.38440 * 119.98013 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47391 * 300.00103 * 1 2 3 28 28 H 1.09003 * 109.46662 * 60.00713 * 1 2 3 29 29 H 1.08999 * 109.46773 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.87696 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.90083 * 180.02562 * 5 4 3 32 32 H 1.08001 * 120.02173 * 180.25108 * 6 5 4 33 33 H 1.09001 * 109.47654 * 60.00189 * 13 12 11 34 34 H 1.08998 * 109.47543 * 300.00143 * 13 12 11 35 35 H 0.96998 * 120.00525 * 359.97438 * 16 14 13 36 36 H 0.97004 * 120.00112 * 179.97438 * 20 19 17 37 37 H 1.07995 * 120.10519 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2892 2.3754 0.0005 5 6 1.9111 3.6101 0.0000 6 6 3.2886 3.6937 0.0044 7 6 4.0579 2.5287 -0.0010 8 6 5.5330 2.6141 -0.0010 9 7 6.3686 1.6044 0.0002 10 7 7.5760 2.0484 -0.0044 11 6 7.5588 3.3615 -0.0005 12 16 8.9652 4.4229 -0.0014 13 6 10.2898 3.1895 0.0007 14 6 11.6257 3.8869 -0.0004 15 8 11.6771 5.0988 -0.0029 16 7 12.7633 3.1642 0.0064 17 6 13.9785 3.7988 0.0059 18 1 14.0243 4.8778 -0.0004 19 6 15.1514 3.0537 0.0135 20 7 15.0956 1.7408 0.0216 21 14 16.8073 3.9183 0.0121 22 1 17.2425 4.1562 1.4118 23 1 17.8089 3.0682 -0.6802 24 1 16.6865 5.2178 -0.6964 25 8 6.2687 3.7478 -0.0014 26 6 3.4285 1.2831 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2109 2.3162 0.0014 31 1 1.3171 4.5121 0.0008 32 1 3.7713 4.6599 0.0081 33 1 10.2059 2.5646 -0.8885 34 1 10.2053 2.5670 0.8914 35 1 12.7222 2.1951 0.0124 36 1 15.9143 1.2206 0.0265 37 1 4.0181 0.3783 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473070184.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:56 Heat of formation + Delta-G solvation = 0.514406 kcal Electronic energy + Delta-G solvation = -23909.686392 eV Core-core repulsion = 19974.341646 eV Total energy + Delta-G solvation = -3935.344746 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.04812 -40.54316 -38.32370 -37.95069 -36.22889 -34.17395 -32.99008 -31.53193 -31.06451 -30.08067 -29.22866 -27.77058 -24.99049 -24.54806 -24.24090 -22.54247 -21.81389 -19.87085 -19.02882 -18.40492 -17.84990 -17.46404 -16.78614 -16.49141 -16.20103 -16.11275 -16.05147 -15.56238 -14.72278 -14.62754 -14.35880 -14.19148 -13.98423 -13.54481 -13.34439 -12.74351 -12.66906 -12.53894 -12.30965 -12.26421 -11.96822 -11.76541 -11.67084 -11.60913 -11.25731 -11.15722 -10.77261 -10.49634 -10.48316 -10.33124 -9.68984 -9.32536 -8.78533 -8.73750 -8.17410 -7.68624 -6.56637 -3.99059 0.11898 0.60366 0.93938 1.33992 2.05011 2.30621 2.39196 2.93728 3.08793 3.20745 3.26213 3.31394 3.62389 3.89903 4.05492 4.28020 4.44600 4.61180 4.64932 4.67158 4.71794 4.86762 4.89917 4.96838 5.01404 5.06999 5.14196 5.23682 5.47869 5.50730 5.63810 5.72853 5.88923 5.98699 6.00707 6.11620 6.87503 7.41735 7.84318 8.09008 8.36068 8.97931 9.30200 9.77619 10.59876 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.037546 B = 0.001797 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.574228 B =15575.749707 C =16300.859593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.128 3.872 4 C -0.189 4.189 5 C -0.079 4.079 6 C -0.123 4.123 7 C 0.026 3.974 8 C 0.189 3.811 9 N -0.254 5.254 10 N -0.293 5.293 11 C 0.131 3.869 12 S 0.155 5.845 13 C -0.143 4.143 14 C 0.449 3.551 15 O -0.586 6.586 16 N -0.540 5.540 17 C -0.306 4.306 18 H 0.108 0.892 19 C 0.028 3.972 20 N -0.892 5.892 21 Si 0.935 3.065 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.268 1.268 25 O -0.201 6.201 26 C -0.104 4.104 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.397 0.603 36 H 0.275 0.725 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.998 -1.208 -0.027 29.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.083 3.917 4 C -0.209 4.209 5 C -0.097 4.097 6 C -0.143 4.143 7 C 0.024 3.976 8 C -0.024 4.024 9 N -0.102 5.102 10 N -0.146 5.146 11 C -0.184 4.184 12 S 0.384 5.616 13 C -0.295 4.295 14 C 0.233 3.767 15 O -0.472 6.472 16 N -0.175 5.175 17 C -0.436 4.436 18 H 0.126 0.874 19 C -0.176 4.176 20 N -0.531 5.531 21 Si 0.761 3.239 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.192 1.192 25 O -0.082 6.082 26 C -0.124 4.124 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.121 0.879 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.231 0.769 36 H 0.085 0.915 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -28.085 -0.784 -0.037 28.096 hybrid contribution 0.051 -0.454 0.016 0.457 sum -28.034 -1.238 -0.022 28.062 Atomic orbital electron populations 1.23114 0.77987 1.04326 1.01452 1.86116 1.21622 1.26276 1.88590 1.18696 0.91628 0.84603 0.96816 1.21462 1.00500 0.92238 1.06672 1.20854 0.93841 0.97435 0.97543 1.21214 0.93975 0.97659 1.01464 1.16820 0.83304 0.94073 1.03404 1.25224 0.94759 0.79097 1.03274 1.74412 0.95219 1.25568 1.15008 1.75009 1.13770 1.05589 1.20258 1.30980 0.88876 0.96741 1.01778 1.86793 0.84993 1.00816 1.88986 1.23895 0.95635 1.01469 1.08543 1.18730 0.83651 0.87633 0.86731 1.90573 1.86234 1.13162 1.57275 1.41732 1.04304 1.09359 1.62096 1.19775 0.81340 0.93957 1.48506 0.87431 1.25355 1.00227 0.95479 0.96524 1.69617 1.30036 1.04733 1.48752 0.85779 0.80397 0.79103 0.78580 1.20171 1.20744 1.19200 1.84989 1.16413 1.35817 1.70979 1.20308 0.91704 0.97585 1.02794 0.92444 0.92451 0.87941 0.84785 0.84631 0.84649 0.86623 0.86626 0.76889 0.91457 0.83351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.65 10.49 -19.46 -0.20 -2.85 16 3 C 0.13 1.15 6.68 -39.27 -0.26 0.88 16 4 C -0.19 -1.29 9.03 -39.34 -0.36 -1.65 16 5 C -0.08 -0.53 10.03 -39.66 -0.40 -0.93 16 6 C -0.12 -1.11 9.72 -39.15 -0.38 -1.49 16 7 C 0.03 0.30 5.87 -105.00 -0.62 -0.32 16 8 C 0.19 2.73 7.98 -13.99 -0.11 2.62 16 9 N -0.25 -4.20 11.89 32.08 0.38 -3.82 16 10 N -0.29 -5.11 11.62 30.33 0.35 -4.76 16 11 C 0.13 2.14 8.53 52.54 0.45 2.58 16 12 S 0.15 2.55 21.45 -107.50 -2.31 0.25 16 13 C -0.14 -2.53 5.71 36.01 0.21 -2.33 16 14 C 0.45 10.20 7.80 -10.98 -0.09 10.11 16 15 O -0.59 -15.09 15.44 5.54 0.09 -15.00 16 16 N -0.54 -13.22 5.29 -10.96 -0.06 -13.28 16 17 C -0.31 -8.22 9.68 -14.93 -0.14 -8.37 16 18 H 0.11 3.00 7.16 -52.48 -0.38 2.63 16 19 C 0.03 0.71 5.50 -17.47 -0.10 0.62 16 20 N -0.89 -23.50 13.05 55.50 0.72 -22.78 16 21 Si 0.94 20.31 29.55 -169.99 -5.02 15.29 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 25 O -0.20 -3.02 10.69 2.31 0.02 -3.00 16 26 C -0.10 -1.11 9.64 -39.01 -0.38 -1.49 16 27 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16 28 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.13 0.55 6.28 -52.49 -0.33 0.22 16 31 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 32 H 0.14 1.10 7.93 -52.49 -0.42 0.68 16 33 H 0.12 1.89 8.14 -51.92 -0.42 1.47 16 34 H 0.12 1.89 8.14 -51.92 -0.42 1.47 16 35 H 0.40 9.30 7.90 -40.82 -0.32 8.98 16 36 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 37 H 0.15 1.66 7.86 -52.49 -0.41 1.24 16 LS Contribution 349.99 15.07 5.27 5.27 Total: -1.00 -31.76 349.99 -5.41 -37.17 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -3.48 Total: 6.18 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.18 Total: 1.34 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 1.40 Total: -44.64 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.09 Total: -20.85 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.31 Total: 0.25 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.76 -5.41 -37.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473070184.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.685 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds