Wall clock time and date at job start Tue Mar 31 2020 18:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35910 * 116.99611 * 2 1 4 4 C 1.38870 * 119.98487 * 0.02562 * 3 2 1 5 5 C 1.38247 * 120.24797 * 180.02562 * 4 3 2 6 6 C 1.38006 * 120.20685 * 359.73610 * 5 4 3 7 7 C 1.39615 * 119.96045 * 0.49471 * 6 5 4 8 8 C 1.47756 * 120.12124 * 179.78648 * 7 6 5 9 9 N 1.31060 * 126.29655 * 179.67757 * 8 7 6 10 10 N 1.28648 * 109.42053 * 179.80499 * 9 8 7 11 11 C 1.31322 * 109.43685 * 0.38411 * 10 9 8 12 12 S 1.76195 * 126.28885 * 179.88665 * 11 10 9 13 13 C 1.80996 * 99.99998 * 359.68927 * 12 11 10 14 14 C 1.50706 * 109.47276 * 179.97438 * 13 12 11 15 15 O 1.21297 * 119.99667 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00081 * 179.72626 * 14 13 12 17 17 C 1.37095 * 119.99878 * 180.02562 * 16 14 13 18 18 H 1.08004 * 120.00160 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00380 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99401 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00554 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46847 * 89.99945 * 21 19 17 23 23 H 1.48493 * 109.47164 * 210.00376 * 21 19 17 24 24 H 1.48502 * 109.46888 * 330.00260 * 21 19 17 25 25 O 1.34669 * 107.42139 * 359.62360 * 11 10 9 26 26 C 1.38440 * 119.98013 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47391 * 300.00103 * 1 2 3 28 28 H 1.09003 * 109.46662 * 60.00713 * 1 2 3 29 29 H 1.08999 * 109.46773 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.87696 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.90083 * 180.02562 * 5 4 3 32 32 H 1.08001 * 120.02173 * 180.25108 * 6 5 4 33 33 H 1.09001 * 109.47654 * 60.00189 * 13 12 11 34 34 H 1.08998 * 109.47543 * 300.00143 * 13 12 11 35 35 H 0.96998 * 120.00525 * 359.97438 * 16 14 13 36 36 H 0.97004 * 120.00112 * 179.97438 * 20 19 17 37 37 H 1.07995 * 120.10519 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2892 2.3754 0.0005 5 6 1.9111 3.6101 0.0000 6 6 3.2886 3.6937 0.0044 7 6 4.0579 2.5287 -0.0010 8 6 5.5330 2.6141 -0.0010 9 7 6.3686 1.6044 0.0002 10 7 7.5760 2.0484 -0.0044 11 6 7.5588 3.3615 -0.0005 12 16 8.9652 4.4229 -0.0014 13 6 10.2898 3.1895 0.0007 14 6 11.6257 3.8869 -0.0004 15 8 11.6771 5.0988 -0.0029 16 7 12.7633 3.1642 0.0064 17 6 13.9785 3.7988 0.0059 18 1 14.0243 4.8778 -0.0004 19 6 15.1514 3.0537 0.0135 20 7 15.0956 1.7408 0.0216 21 14 16.8073 3.9183 0.0121 22 1 17.2425 4.1562 1.4118 23 1 17.8089 3.0682 -0.6802 24 1 16.6865 5.2178 -0.6964 25 8 6.2687 3.7478 -0.0014 26 6 3.4285 1.2831 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2109 2.3162 0.0014 31 1 1.3171 4.5121 0.0008 32 1 3.7713 4.6599 0.0081 33 1 10.2059 2.5646 -0.8885 34 1 10.2053 2.5670 0.8914 35 1 12.7222 2.1951 0.0124 36 1 15.9143 1.2206 0.0265 37 1 4.0181 0.3783 0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473070184.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:55 Heat of formation + Delta-G solvation = -24.298393 kcal Electronic energy + Delta-G solvation = -23910.762355 eV Core-core repulsion = 19974.341646 eV Total energy + Delta-G solvation = -3936.420709 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -45.25884 -41.15154 -40.21839 -38.57672 -37.45236 -36.13588 -33.90311 -33.46673 -31.77287 -31.30269 -30.53341 -28.18508 -26.76711 -25.72513 -25.34462 -23.30151 -22.65182 -21.62540 -20.27127 -19.85084 -19.17963 -18.68517 -17.87907 -17.62638 -17.18114 -16.86340 -16.67955 -16.59072 -16.43446 -16.37806 -15.98798 -15.12342 -14.79483 -14.57456 -14.49825 -14.06735 -13.91495 -13.70029 -13.53695 -13.26040 -13.23119 -12.92533 -12.83839 -12.67987 -12.47244 -12.36811 -12.12270 -11.96715 -11.76812 -11.72102 -11.59869 -10.69884 -10.17375 -10.11564 -9.39751 -8.94078 -8.53489 -6.04173 -0.80807 -0.70674 0.28788 0.31177 0.66820 1.18930 1.35001 1.35303 1.43766 1.56481 1.83489 2.26577 2.34201 2.61815 2.87712 2.93708 3.12626 3.62868 3.69355 3.78811 3.89427 3.98869 4.04437 4.08628 4.17856 4.26438 4.32180 4.42928 4.44797 4.44919 4.75664 4.83408 5.09818 5.24933 5.29832 5.36749 5.53082 5.86235 6.34312 6.41770 6.87474 6.99526 7.36805 7.87590 8.63117 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.037546 B = 0.001797 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.574228 B =15575.749707 C =16300.859593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.336 6.336 3 C 0.121 3.879 4 C -0.172 4.172 5 C -0.070 4.070 6 C -0.123 4.123 7 C -0.004 4.004 8 C 0.209 3.791 9 N -0.289 5.289 10 N -0.310 5.310 11 C 0.126 3.874 12 S 0.164 5.836 13 C -0.136 4.136 14 C 0.453 3.547 15 O -0.617 6.617 16 N -0.551 5.551 17 C -0.339 4.339 18 H 0.089 0.911 19 C -0.008 4.008 20 N -0.913 5.913 21 Si 0.998 3.002 22 H -0.270 1.270 23 H -0.271 1.271 24 H -0.269 1.269 25 O -0.199 6.199 26 C -0.120 4.120 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.170 0.830 31 H 0.174 0.826 32 H 0.143 0.857 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.400 0.600 36 H 0.281 0.719 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.646 -0.627 -0.013 31.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.250 6.250 3 C 0.076 3.924 4 C -0.191 4.191 5 C -0.087 4.087 6 C -0.143 4.143 7 C -0.006 4.006 8 C -0.003 4.003 9 N -0.135 5.135 10 N -0.163 5.163 11 C -0.191 4.191 12 S 0.393 5.607 13 C -0.287 4.287 14 C 0.239 3.761 15 O -0.506 6.506 16 N -0.186 5.186 17 C -0.468 4.468 18 H 0.107 0.893 19 C -0.209 4.209 20 N -0.553 5.553 21 Si 0.821 3.179 22 H -0.195 1.195 23 H -0.196 1.196 24 H -0.194 1.194 25 O -0.081 6.081 26 C -0.140 4.140 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.134 0.866 30 H 0.187 0.813 31 H 0.191 0.809 32 H 0.161 0.839 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.235 0.765 36 H 0.090 0.910 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -30.764 -0.244 -0.022 30.765 hybrid contribution 0.550 -0.663 0.011 0.861 sum -30.215 -0.907 -0.010 30.228 Atomic orbital electron populations 1.23450 0.75689 1.05876 1.02890 1.86097 1.24053 1.26309 1.88511 1.18783 0.91093 0.85764 0.96805 1.21888 1.02146 0.91229 1.03830 1.21287 0.92956 0.98894 0.95574 1.21439 0.95075 0.96984 1.00796 1.16969 0.81653 0.95412 1.06534 1.25899 0.95869 0.78330 1.00250 1.74378 0.95256 1.26407 1.17487 1.74930 1.14623 1.06119 1.20588 1.30777 0.89207 0.96408 1.02670 1.86731 0.84505 0.99863 1.89597 1.23673 0.93370 1.01590 1.10086 1.19389 0.84871 0.87328 0.84553 1.90548 1.87184 1.14782 1.58041 1.41777 1.04421 1.09528 1.62864 1.19784 0.82928 0.93468 1.50631 0.89326 1.26147 1.03097 0.96133 0.95528 1.69680 1.31159 1.05655 1.48807 0.84848 0.76278 0.77987 0.78776 1.19491 1.19614 1.19376 1.84986 1.15997 1.36020 1.71076 1.20264 0.92883 0.96821 1.04064 0.90907 0.90916 0.86627 0.81311 0.80897 0.83892 0.85085 0.85083 0.76509 0.90957 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.34 -5.21 10.49 -92.54 -0.97 -6.19 16 3 C 0.12 1.98 6.68 22.47 0.15 2.13 16 4 C -0.17 -1.72 9.03 22.42 0.20 -1.51 16 5 C -0.07 -0.68 10.03 22.22 0.22 -0.46 16 6 C -0.12 -1.96 9.72 22.55 0.22 -1.74 16 7 C 0.00 -0.08 5.87 -20.11 -0.12 -0.20 16 8 C 0.21 6.11 7.98 87.33 0.70 6.80 16 9 N -0.29 -9.82 11.89 -166.16 -1.98 -11.80 16 10 N -0.31 -10.98 11.62 -171.85 -2.00 -12.98 16 11 C 0.13 4.11 8.53 130.32 1.11 5.22 16 12 S 0.16 5.41 21.45 -56.49 -1.21 4.20 16 13 C -0.14 -4.80 5.71 71.24 0.41 -4.39 16 14 C 0.45 20.92 7.80 87.66 0.68 21.61 16 15 O -0.62 -32.41 15.44 -3.08 -0.05 -32.46 16 16 N -0.55 -27.53 5.29 -306.98 -1.62 -29.15 16 17 C -0.34 -18.58 9.68 84.04 0.81 -17.77 16 18 H 0.09 5.11 7.16 -2.91 -0.02 5.09 16 19 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 20 N -0.91 -48.23 13.05 21.66 0.28 -47.94 16 21 Si 1.00 41.56 29.55 68.60 2.03 43.59 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 23 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 O -0.20 -5.99 10.69 -14.63 -0.16 -6.15 16 26 C -0.12 -2.59 9.64 22.64 0.22 -2.37 16 27 H 0.07 0.18 7.66 -2.39 -0.02 0.16 16 28 H 0.07 0.18 7.66 -2.39 -0.02 0.16 16 29 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.17 0.50 6.28 -2.91 -0.02 0.48 16 31 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 32 H 0.14 2.02 7.93 -2.91 -0.02 2.00 16 33 H 0.13 4.26 8.14 -2.39 -0.02 4.24 16 34 H 0.13 4.26 8.14 -2.40 -0.02 4.24 16 35 H 0.40 19.15 7.90 -92.71 -0.73 18.41 16 36 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 37 H 0.13 3.16 7.86 -2.91 -0.02 3.14 16 Total: -1.00 -70.25 349.99 0.93 -69.32 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.41 Total: 20.99 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 6.19 Total: 8.56 kcal Atomic # 7 Polarization: -96.56 SS G_CDS: -5.31 Total: -101.87 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -1.18 Total: -44.79 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: 5.41 SS G_CDS: -1.21 Total: 4.20 kcal Total: -70.25 0.93 -69.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473070184.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.022 kcal (2) G-P(sol) polarization free energy of solvation -70.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds