Wall clock time and date at job start Tue Mar 31 2020 18:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42902 * 112.93649 * 48.71324 * 9 7 2 11 11 C 1.53938 * 113.73794 * 277.00690 * 9 7 2 12 12 N 1.47963 * 86.17951 * 221.92208 * 11 9 7 13 13 C 1.46898 * 110.99631 * 137.58649 * 12 11 9 14 14 C 1.50701 * 109.47526 * 70.63851 * 13 12 11 15 15 N 1.32415 * 118.52558 * 89.99825 * 14 13 12 16 16 C 1.32397 * 121.51937 * 179.97438 * 15 14 13 17 17 O 1.35289 * 120.89057 * 180.02562 * 16 15 14 18 18 C 1.41417 * 118.21816 * 0.02562 * 16 15 14 19 19 C 1.40005 * 122.11998 * 180.02562 * 18 16 15 20 20 C 1.36448 * 119.49418 * 179.97438 * 19 18 16 21 21 Cl 1.73592 * 119.55986 * 179.97438 * 20 19 18 22 22 C 1.39356 * 120.87907 * 359.97303 * 20 19 18 23 23 C 1.36275 * 121.02515 * 0.02562 * 22 20 19 24 24 C 1.40169 * 119.60780 * 359.97438 * 23 22 20 25 25 N 1.31139 * 118.52374 * 269.72999 * 14 13 12 26 26 C 1.47958 * 90.76665 * 24.68790 * 12 11 9 27 27 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 28 28 H 0.96698 * 114.00248 * 309.66822 * 10 9 7 29 29 H 1.08994 * 113.75491 * 336.24326 * 11 9 7 30 30 H 1.08995 * 113.75737 * 107.60260 * 11 9 7 31 31 H 1.09003 * 109.46883 * 190.63828 * 13 12 11 32 32 H 1.08999 * 109.46999 * 310.63018 * 13 12 11 33 33 H 0.96701 * 113.99186 * 90.00309 * 17 16 15 34 34 H 1.08006 * 120.25229 * 359.95236 * 19 18 16 35 35 H 1.07996 * 119.48418 * 179.97438 * 22 20 19 36 36 H 1.08006 * 120.19074 * 180.02562 * 23 22 20 37 37 H 1.08995 * 113.76417 * 220.99374 * 26 12 11 38 38 H 1.08996 * 113.85790 * 89.63722 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2164 -2.5492 -0.9790 11 6 0.7985 -2.9469 1.4069 12 7 1.2179 -4.3062 0.9997 13 6 1.9375 -4.9828 2.0870 14 6 0.9709 -5.3288 3.1902 15 7 0.3589 -6.5024 3.1497 16 6 -0.5011 -6.8673 4.0879 17 8 -1.1188 -8.0697 4.0341 18 6 -0.7566 -5.9665 5.1476 19 6 -1.6498 -6.2687 6.1825 20 6 -1.8557 -5.3598 7.1791 21 17 -2.9633 -5.7325 8.4627 22 6 -1.1886 -4.1362 7.1802 23 6 -0.3132 -3.8126 6.1872 24 6 -0.0778 -4.7230 5.1477 25 7 0.7776 -4.4564 4.1500 26 6 2.1618 -3.7402 0.0108 27 1 -0.4850 0.8400 0.0004 28 1 -0.3756 -1.7848 -0.9666 29 1 1.3957 -2.5270 2.2162 30 1 -0.2742 -2.8499 1.5737 31 1 2.3962 -5.8954 1.7064 32 1 2.7120 -4.3221 2.4765 33 1 -0.6387 -8.7788 4.4833 34 1 -2.1722 -7.2140 6.1917 35 1 -1.3689 -3.4333 7.9800 36 1 0.1968 -2.8607 6.2017 37 1 2.1783 -4.2769 -0.9377 38 1 3.1583 -3.5519 0.4101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473414143.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:43 Heat of formation + Delta-G solvation = 18.016257 kcal Electronic energy + Delta-G solvation = -25895.381098 eV Core-core repulsion = 21958.751583 eV Total energy + Delta-G solvation = -3936.629515 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.68166 -39.13105 -38.44277 -37.81189 -36.61321 -34.30576 -33.34558 -32.06345 -31.84321 -30.89282 -28.65197 -26.20188 -25.10344 -24.88434 -23.81872 -22.63637 -21.72965 -19.12736 -18.87684 -18.51882 -18.21579 -17.25897 -16.50217 -15.80112 -15.56731 -15.24572 -15.03420 -14.58898 -14.37727 -14.24897 -14.09087 -13.82829 -13.29608 -13.21783 -12.68911 -12.47600 -12.16433 -12.03255 -11.93171 -11.60482 -11.42717 -11.36860 -11.13886 -10.93940 -10.83144 -10.73161 -10.54592 -10.33820 -10.02173 -9.54577 -9.38022 -9.32070 -8.64102 -8.49829 -8.20750 -7.82710 -6.24113 -4.33942 -0.12874 0.36662 1.47553 1.70059 2.53250 3.02192 3.21212 3.28471 3.31100 3.67652 3.85795 4.05578 4.23016 4.27338 4.50969 4.60326 4.84882 4.92767 5.03461 5.07287 5.29426 5.44299 5.51456 5.68838 5.75128 5.78021 5.93124 6.04477 6.06135 6.21983 6.31643 6.46961 6.68545 6.83204 7.05903 7.07227 7.12239 7.36750 7.78166 7.89871 8.01560 8.05283 8.67508 9.35904 9.67162 10.81904 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.003091 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.093081 B = 9055.206262 C =10305.161742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.244 3.756 10 O -0.572 6.572 11 C -0.008 4.008 12 N -0.472 5.472 13 C 0.081 3.919 14 C 0.377 3.623 15 N -0.520 5.520 16 C 0.407 3.593 17 O -0.467 6.467 18 C -0.177 4.177 19 C -0.056 4.056 20 C -0.044 4.044 21 Cl -0.064 7.064 22 C -0.075 4.075 23 C -0.082 4.082 24 C 0.179 3.821 25 N -0.496 5.496 26 C 0.012 3.988 27 H 0.270 0.730 28 H 0.389 0.611 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.409 0.591 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.154 0.846 37 H 0.079 0.921 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.592 -12.275 16.792 20.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.203 3.797 10 O -0.384 6.384 11 C -0.137 4.137 12 N -0.196 5.196 13 C -0.049 4.049 14 C 0.109 3.891 15 N -0.245 5.245 16 C 0.205 3.795 17 O -0.274 6.274 18 C -0.183 4.183 19 C -0.077 4.077 20 C -0.071 4.071 21 Cl -0.035 7.035 22 C -0.097 4.097 23 C -0.101 4.101 24 C 0.051 3.949 25 N -0.212 5.212 26 C -0.116 4.116 27 H 0.081 0.919 28 H 0.244 0.756 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.270 0.730 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.172 0.828 37 H 0.098 0.902 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.805 -12.640 15.579 20.143 hybrid contribution 0.190 1.270 1.597 2.049 sum -1.615 -11.369 17.176 20.661 Atomic orbital electron populations 1.69355 1.06134 1.27761 1.50559 1.25052 0.94954 0.99648 0.93427 0.86412 0.79772 0.82420 0.78329 1.20358 1.21017 1.19702 1.21628 0.93663 0.90620 1.51515 0.91566 1.19749 0.85169 0.90734 0.84080 1.86038 1.45210 1.50099 1.57044 1.24753 1.00566 0.86657 1.01729 1.68755 1.26094 1.17189 1.07547 1.21526 0.92440 1.01299 0.89656 1.22953 0.91374 0.82863 0.91955 1.67789 1.09109 1.21157 1.26397 1.19547 0.86574 0.86789 0.86610 1.84670 1.46546 1.16630 1.79601 1.19457 1.02937 0.98162 0.97755 1.20698 0.96029 0.99684 0.91266 1.20617 0.97334 0.96443 0.92695 1.98384 1.61351 1.94425 1.49366 1.20910 0.94760 0.94996 0.99053 1.20786 0.98023 0.99763 0.91532 1.19015 0.91461 0.91089 0.93369 1.68765 1.17892 1.31863 1.02668 1.24172 0.95038 0.96503 0.95881 0.91922 0.75629 0.91234 0.91682 0.88662 0.91334 0.73044 0.83510 0.83710 0.82827 0.90238 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.32 11.09 55.43 0.61 -23.70 16 2 C 0.07 1.88 5.40 -17.82 -0.10 1.79 16 3 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -14.27 8.62 -34.44 -0.30 -14.57 16 8 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.24 6.24 1.44 -90.83 -0.13 6.11 16 10 O -0.57 -15.79 13.48 -35.23 -0.48 -16.26 16 11 C -0.01 -0.19 6.64 -2.76 -0.02 -0.21 16 12 N -0.47 -10.15 6.25 -239.69 -1.50 -11.64 16 13 C 0.08 1.43 5.22 -4.98 -0.03 1.40 16 14 C 0.38 6.63 6.74 -157.22 -1.06 5.57 16 15 N -0.52 -8.65 10.30 -10.41 -0.11 -8.75 16 16 C 0.41 5.58 7.89 -16.10 -0.13 5.45 16 17 O -0.47 -4.80 12.94 -17.56 -0.23 -5.03 16 18 C -0.18 -2.31 5.75 -106.71 -0.61 -2.92 16 19 C -0.06 -0.57 9.36 -39.57 -0.37 -0.94 16 20 C -0.04 -0.43 6.28 -39.81 -0.25 -0.68 16 21 Cl -0.06 -0.55 28.92 -51.86 -1.50 -2.05 16 22 C -0.08 -0.72 9.72 -39.87 -0.39 -1.11 16 23 C -0.08 -0.97 10.01 -39.56 -0.40 -1.36 16 24 C 0.18 2.63 6.61 -84.84 -0.56 2.07 16 25 N -0.50 -8.54 10.04 -8.80 -0.09 -8.63 16 26 C 0.01 0.27 7.36 -2.76 -0.02 0.25 16 27 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.39 10.92 6.47 45.56 0.29 11.21 16 29 H 0.07 1.65 7.73 -51.93 -0.40 1.25 16 30 H 0.06 1.69 8.14 -51.93 -0.42 1.27 16 31 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.07 1.17 7.69 -51.93 -0.40 0.77 16 33 H 0.41 1.77 9.06 45.56 0.41 2.18 16 34 H 0.15 1.19 7.72 -52.48 -0.41 0.78 16 35 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 37 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 38 H 0.07 1.36 7.75 -51.93 -0.40 0.96 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -31.65 344.00 -10.03 -41.68 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -2.56 Total: 12.99 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -4.35 Total: 0.83 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -1.08 Total: -52.73 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.70 Total: -21.29 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.65 -10.03 -41.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473414143.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.699 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds