Wall clock time and date at job start Tue Mar 31 2020 18:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42902 * 112.93649 * 48.71324 * 9 7 2 11 11 C 1.53938 * 113.73794 * 277.00690 * 9 7 2 12 12 N 1.47963 * 86.17951 * 221.92208 * 11 9 7 13 13 C 1.46898 * 110.99631 * 137.58649 * 12 11 9 14 14 C 1.50701 * 109.47526 * 70.63851 * 13 12 11 15 15 N 1.32415 * 118.52558 * 89.99825 * 14 13 12 16 16 C 1.32397 * 121.51937 * 179.97438 * 15 14 13 17 17 O 1.35289 * 120.89057 * 180.02562 * 16 15 14 18 18 C 1.41417 * 118.21816 * 0.02562 * 16 15 14 19 19 C 1.40005 * 122.11998 * 180.02562 * 18 16 15 20 20 C 1.36448 * 119.49418 * 179.97438 * 19 18 16 21 21 Cl 1.73592 * 119.55986 * 179.97438 * 20 19 18 22 22 C 1.39356 * 120.87907 * 359.97303 * 20 19 18 23 23 C 1.36275 * 121.02515 * 0.02562 * 22 20 19 24 24 C 1.40169 * 119.60780 * 359.97438 * 23 22 20 25 25 N 1.31139 * 118.52374 * 269.72999 * 14 13 12 26 26 C 1.47958 * 90.76665 * 24.68790 * 12 11 9 27 27 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 28 28 H 0.96698 * 114.00248 * 309.66822 * 10 9 7 29 29 H 1.08994 * 113.75491 * 336.24326 * 11 9 7 30 30 H 1.08995 * 113.75737 * 107.60260 * 11 9 7 31 31 H 1.09003 * 109.46883 * 190.63828 * 13 12 11 32 32 H 1.08999 * 109.46999 * 310.63018 * 13 12 11 33 33 H 0.96701 * 113.99186 * 90.00309 * 17 16 15 34 34 H 1.08006 * 120.25229 * 359.95236 * 19 18 16 35 35 H 1.07996 * 119.48418 * 179.97438 * 22 20 19 36 36 H 1.08006 * 120.19074 * 180.02562 * 23 22 20 37 37 H 1.08995 * 113.76417 * 220.99374 * 26 12 11 38 38 H 1.08996 * 113.85790 * 89.63722 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2164 -2.5492 -0.9790 11 6 0.7985 -2.9469 1.4069 12 7 1.2179 -4.3062 0.9997 13 6 1.9375 -4.9828 2.0870 14 6 0.9709 -5.3288 3.1902 15 7 0.3589 -6.5024 3.1497 16 6 -0.5011 -6.8673 4.0879 17 8 -1.1188 -8.0697 4.0341 18 6 -0.7566 -5.9665 5.1476 19 6 -1.6498 -6.2687 6.1825 20 6 -1.8557 -5.3598 7.1791 21 17 -2.9633 -5.7325 8.4627 22 6 -1.1886 -4.1362 7.1802 23 6 -0.3132 -3.8126 6.1872 24 6 -0.0778 -4.7230 5.1477 25 7 0.7776 -4.4564 4.1500 26 6 2.1618 -3.7402 0.0108 27 1 -0.4850 0.8400 0.0004 28 1 -0.3756 -1.7848 -0.9666 29 1 1.3957 -2.5270 2.2162 30 1 -0.2742 -2.8499 1.5737 31 1 2.3962 -5.8954 1.7064 32 1 2.7120 -4.3221 2.4765 33 1 -0.6387 -8.7788 4.4833 34 1 -2.1722 -7.2140 6.1917 35 1 -1.3689 -3.4333 7.9800 36 1 0.1968 -2.8607 6.2017 37 1 2.1783 -4.2769 -0.9377 38 1 3.1583 -3.5519 0.4101 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473414143.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:42 Heat of formation + Delta-G solvation = -9.651210 kcal Electronic energy + Delta-G solvation = -25896.580850 eV Core-core repulsion = 21958.751583 eV Total energy + Delta-G solvation = -3937.829266 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.72126 -40.81597 -39.34910 -38.83982 -37.43960 -36.20812 -34.37527 -34.10603 -32.90663 -32.04248 -30.05174 -27.95760 -26.89889 -25.90823 -25.23587 -23.56562 -23.16943 -20.52197 -20.14494 -19.81130 -19.23583 -19.09536 -17.50954 -17.20358 -16.95164 -16.63568 -16.40413 -15.96638 -15.76041 -15.71074 -15.31735 -15.18619 -14.34733 -14.21266 -14.12708 -13.79918 -13.77771 -13.35604 -13.33120 -13.03492 -12.85969 -12.70416 -12.53507 -12.46232 -12.23158 -12.10756 -12.00323 -11.83858 -11.70562 -11.21271 -10.63210 -10.51573 -10.43721 -10.14537 -9.65471 -9.42872 -8.23373 -6.41378 -1.08829 -0.62665 0.52987 0.90946 1.43391 1.44766 1.55020 1.56515 2.06772 2.38320 2.58407 2.77269 2.97453 3.06687 3.22227 3.31565 3.62530 3.72806 3.96065 4.05110 4.10495 4.20482 4.26014 4.42281 4.46355 4.52571 4.63866 4.66016 4.73396 4.88778 4.89963 5.07600 5.11199 5.30387 5.38455 5.38940 5.75524 5.78564 5.98135 6.20234 6.39134 6.64277 6.91360 7.31506 7.51742 8.81841 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.003091 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.093081 B = 9055.206262 C =10305.161742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.025 3.975 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.217 3.783 10 O -0.586 6.586 11 C 0.013 3.987 12 N -0.480 5.480 13 C 0.084 3.916 14 C 0.356 3.644 15 N -0.549 5.549 16 C 0.413 3.587 17 O -0.464 6.464 18 C -0.182 4.182 19 C -0.050 4.050 20 C -0.042 4.042 21 Cl -0.046 7.046 22 C -0.057 4.057 23 C -0.098 4.098 24 C 0.151 3.849 25 N -0.522 5.522 26 C 0.024 3.976 27 H 0.273 0.727 28 H 0.382 0.618 29 H 0.065 0.935 30 H 0.032 0.968 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.435 0.565 34 H 0.172 0.828 35 H 0.176 0.824 36 H 0.158 0.842 37 H 0.083 0.917 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.648 -12.851 18.836 22.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.175 4.175 3 Si 0.794 3.206 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.594 4.594 8 H 0.088 0.912 9 C 0.175 3.825 10 O -0.397 6.397 11 C -0.117 4.117 12 N -0.204 5.204 13 C -0.045 4.045 14 C 0.088 3.912 15 N -0.275 5.275 16 C 0.212 3.788 17 O -0.276 6.276 18 C -0.189 4.189 19 C -0.071 4.071 20 C -0.069 4.069 21 Cl -0.016 7.016 22 C -0.078 4.078 23 C -0.117 4.117 24 C 0.024 3.976 25 N -0.238 5.238 26 C -0.104 4.104 27 H 0.082 0.918 28 H 0.235 0.765 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.132 0.868 32 H 0.091 0.909 33 H 0.300 0.700 34 H 0.189 0.811 35 H 0.193 0.807 36 H 0.176 0.824 37 H 0.101 0.899 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.857 -13.265 17.656 22.161 hybrid contribution 0.064 1.331 1.137 1.752 sum -1.793 -11.934 18.793 22.334 Atomic orbital electron populations 1.69449 1.07395 1.28560 1.50903 1.25851 0.95756 1.02923 0.92946 0.85384 0.78680 0.78209 0.78315 1.20063 1.20719 1.18879 1.21914 0.94007 0.91553 1.51972 0.91189 1.20169 0.85564 0.92273 0.84446 1.86021 1.45759 1.49804 1.58111 1.24348 0.98253 0.88388 1.00666 1.68601 1.27065 1.15810 1.08889 1.21499 0.92497 1.01598 0.88940 1.22742 0.92377 0.83758 0.92369 1.67737 1.10733 1.21032 1.27983 1.19695 0.85382 0.87764 0.85933 1.84628 1.46546 1.16335 1.80112 1.19564 1.03353 0.97523 0.98413 1.20914 0.95117 1.00753 0.90298 1.20760 0.97060 0.96243 0.92820 1.98400 1.60578 1.94307 1.48356 1.21235 0.92761 0.95229 0.98577 1.20920 0.99242 0.99804 0.91725 1.19427 0.91903 0.92570 0.93678 1.68684 1.19202 1.32374 1.03538 1.24110 0.95346 0.94521 0.96401 0.91774 0.76468 0.91696 0.94944 0.86814 0.90886 0.69973 0.81075 0.80706 0.82418 0.89862 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.00 11.09 21.45 0.24 -50.76 16 2 C 0.02 1.31 5.40 84.65 0.46 1.77 16 3 Si 0.97 41.88 29.54 68.60 2.03 43.90 16 4 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.56 -29.94 8.62 25.60 0.22 -29.72 16 8 H 0.07 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.22 11.30 1.44 -10.89 -0.02 11.28 16 10 O -0.59 -33.38 13.48 -148.98 -2.01 -35.39 16 11 C 0.01 0.64 6.64 86.41 0.57 1.22 16 12 N -0.48 -20.97 6.25 -915.46 -5.72 -26.69 16 13 C 0.08 3.01 5.22 85.56 0.45 3.46 16 14 C 0.36 12.78 6.74 138.76 0.94 13.72 16 15 N -0.55 -18.32 10.30 -299.84 -3.09 -21.41 16 16 C 0.41 11.03 7.89 85.39 0.67 11.70 16 17 O -0.46 -8.69 12.94 -85.75 -1.11 -9.80 16 18 C -0.18 -4.59 5.75 -21.22 -0.12 -4.72 16 19 C -0.05 -0.91 9.36 22.28 0.21 -0.70 16 20 C -0.04 -0.71 6.28 22.12 0.14 -0.57 16 21 Cl -0.05 -0.64 28.92 -2.72 -0.08 -0.72 16 22 C -0.06 -0.95 9.72 22.08 0.21 -0.74 16 23 C -0.10 -2.24 10.01 22.28 0.22 -2.01 16 24 C 0.15 4.44 6.61 40.11 0.27 4.71 16 25 N -0.52 -18.43 10.04 -181.74 -1.82 -20.25 16 26 C 0.02 1.06 7.36 86.41 0.64 1.69 16 27 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.38 22.33 6.47 -74.06 -0.48 21.85 16 29 H 0.06 3.20 7.73 -2.39 -0.02 3.18 16 30 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 32 H 0.07 2.51 7.69 -2.39 -0.02 2.49 16 33 H 0.44 2.71 9.06 -74.06 -0.67 2.04 16 34 H 0.17 2.20 7.72 -2.91 -0.02 2.18 16 35 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16 36 H 0.16 3.35 8.06 -2.91 -0.02 3.32 16 37 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 38 H 0.09 3.48 7.75 -2.39 -0.02 3.46 16 Total: -1.00 -69.63 344.00 -6.72 -76.35 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: -0.01 Total: 33.65 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 4.86 Total: 11.11 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -10.40 Total: -119.11 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -3.12 Total: -45.19 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -69.63 -6.72 -76.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473414143.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.702 kcal (2) G-P(sol) polarization free energy of solvation -69.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds