Wall clock time and date at job start Tue Mar 31 2020 18:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47022 * 54.89948 * 3 2 1 5 5 C 1.36930 * 120.00394 * 273.65856 * 4 3 2 6 6 H 1.08001 * 120.00175 * 180.02562 * 5 4 3 7 7 C 1.38810 * 119.99831 * 0.02960 * 5 4 3 8 8 N 1.31614 * 120.00195 * 27.20135 * 7 5 4 9 9 Si 1.86801 * 119.99896 * 207.20045 * 7 5 4 10 10 H 1.48496 * 109.47425 * 84.98859 * 9 7 5 11 11 H 1.48507 * 109.47380 * 204.99249 * 9 7 5 12 12 H 1.48499 * 109.47427 * 324.98896 * 9 7 5 13 13 S 1.65604 * 119.99425 * 93.66230 * 4 3 2 14 14 O 1.42104 * 104.27435 * 153.92906 * 13 4 3 15 15 O 1.42098 * 104.27975 * 26.06840 * 13 4 3 16 16 C 1.81400 * 104.44713 * 269.99525 * 13 4 3 17 17 C 1.53000 * 109.47076 * 180.02562 * 16 13 4 18 18 H 1.09004 * 109.38081 * 304.78910 * 17 16 13 19 19 C 1.52591 * 109.38728 * 185.00338 * 17 16 13 20 20 C 1.52582 * 110.64351 * 169.85430 * 19 17 16 21 21 C 1.53038 * 109.98695 * 69.98430 * 20 19 17 22 22 S 1.81664 * 108.99890 * 296.35039 * 21 20 19 23 23 O 1.42099 * 108.66420 * 168.62601 * 22 21 20 24 24 O 1.42105 * 108.66374 * 299.87180 * 22 21 20 25 25 C 1.53103 * 109.37145 * 64.33491 * 17 16 13 26 26 H 4.40639 * 5.51466 * 180.02562 * 4 1 2 27 27 H 1.09003 * 109.46411 * 294.90255 * 3 2 1 28 28 H 1.08995 * 109.46919 * 174.90605 * 3 2 1 29 29 H 0.97006 * 119.99977 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47048 * 60.00619 * 16 13 4 31 31 H 1.09004 * 109.47327 * 300.00093 * 16 13 4 32 32 H 1.08999 * 109.24234 * 49.55327 * 19 17 16 33 33 H 1.09002 * 109.23590 * 290.15218 * 19 17 16 34 34 H 1.08996 * 109.38714 * 309.82626 * 20 19 17 35 35 H 1.08999 * 109.29951 * 190.08909 * 20 19 17 36 36 H 1.09007 * 109.54713 * 176.49601 * 21 20 19 37 37 H 1.08999 * 109.54840 * 56.20960 * 21 20 19 38 38 H 1.09000 * 109.44985 * 63.91384 * 25 17 16 39 39 H 1.09008 * 109.67881 * 303.60730 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7933 -1.1300 5 6 3.2922 -2.1471 -0.9984 6 1 3.6528 -2.7324 -1.8313 7 6 2.9882 -2.7674 0.2057 8 7 2.0912 -2.2383 1.0105 9 14 3.8523 -4.3530 0.6838 10 1 5.1465 -4.0337 1.3383 11 1 2.9968 -5.1184 1.6259 12 1 4.1006 -5.1677 -0.5327 13 16 3.4967 -0.0534 -2.5666 14 8 4.4630 -0.9056 -3.1660 15 8 3.8223 1.2807 -2.2015 16 6 1.9429 -0.0962 -3.5019 17 6 2.1502 0.5655 -4.8657 18 1 2.5417 1.5728 -4.7233 19 6 0.8150 0.6404 -5.6006 20 6 0.9351 1.5123 -6.8469 21 6 1.7907 0.8045 -7.9000 22 16 3.4753 0.5984 -7.2523 23 8 4.1878 -0.2824 -8.1101 24 8 4.0147 1.8827 -6.9710 25 6 3.1543 -0.2542 -5.6806 26 1 -1.0499 0.0000 -0.0003 27 1 3.0094 -0.4319 0.9322 28 1 3.0089 1.0244 -0.0912 29 1 1.8791 -2.6715 1.8521 30 1 1.1719 0.4415 -2.9502 31 1 1.6329 -1.1315 -3.6441 32 1 0.0626 1.0651 -4.9361 33 1 0.5092 -0.3642 -5.8930 34 1 1.4004 2.4614 -6.5811 35 1 -0.0589 1.6982 -7.2537 36 1 1.8204 1.4049 -8.8094 37 1 1.3625 -0.1733 -8.1207 38 1 2.7394 -1.2423 -5.8798 39 1 4.0855 -0.3538 -5.1227 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475228517.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:38 Heat of formation + Delta-G solvation = -73.610259 kcal Electronic energy + Delta-G solvation = -25973.551645 eV Core-core repulsion = 22138.143813 eV Total energy + Delta-G solvation = -3835.407832 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.074 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -37.92653 -36.81587 -36.44742 -36.00762 -35.87805 -34.69220 -32.95901 -32.20057 -31.24399 -28.00225 -27.13165 -26.71971 -23.94036 -22.70896 -20.62136 -18.89002 -18.59824 -18.03126 -17.04989 -16.67916 -16.58375 -16.48501 -15.70940 -15.55538 -15.27816 -14.75699 -14.57511 -14.17344 -13.74620 -13.56970 -13.38558 -13.11587 -12.92675 -12.54777 -12.36276 -12.11390 -12.00255 -11.93730 -11.74731 -11.51708 -11.41153 -11.36450 -11.05125 -10.89424 -10.88648 -10.81573 -10.62258 -10.55457 -10.35438 -10.22097 -9.84600 -9.52917 -9.32814 -8.96341 -8.39157 -6.73391 -4.01135 0.00019 1.38495 2.64759 3.03656 3.10893 3.14716 3.51869 3.62851 3.85085 3.91078 3.97631 4.25354 4.38807 4.41417 4.54302 4.61935 4.62620 4.78600 4.93616 5.13642 5.21144 5.29658 5.36853 5.44003 5.50030 5.56537 5.71260 5.77127 5.95283 6.02500 6.13534 6.22149 6.40927 6.69042 6.86545 7.05128 7.18465 8.05411 8.46486 8.70627 8.87857 10.20441 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.018075 B = 0.004147 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.707964 B = 6750.275948 C = 7371.134512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.115 4.115 3 C 0.221 3.779 4 N -0.796 5.796 5 C -0.241 4.241 6 H 0.124 0.876 7 C 0.027 3.973 8 N -0.819 5.819 9 Si 0.932 3.068 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.264 1.264 13 S 2.470 3.530 14 O -0.979 6.979 15 O -0.992 6.992 16 C -0.658 4.658 17 C -0.056 4.056 18 H 0.093 0.907 19 C -0.130 4.130 20 C -0.112 4.112 21 C -0.606 4.606 22 S 2.414 3.586 23 O -0.944 6.944 24 O -0.936 6.936 25 C -0.627 4.627 26 H 0.199 0.801 27 H 0.126 0.874 28 H 0.084 0.916 29 H 0.277 0.723 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.143 0.857 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.175 2.639 -8.315 10.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.117 4.117 3 C 0.096 3.904 4 N -0.617 5.617 5 C -0.388 4.388 6 H 0.141 0.859 7 C -0.185 4.185 8 N -0.458 5.458 9 Si 0.757 3.243 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.188 1.188 13 S 2.568 3.432 14 O -0.968 6.968 15 O -0.981 6.981 16 C -0.777 4.777 17 C -0.076 4.076 18 H 0.111 0.889 19 C -0.168 4.168 20 C -0.150 4.150 21 C -0.735 4.735 22 S 2.597 3.403 23 O -0.942 6.942 24 O -0.933 6.933 25 C -0.756 4.756 26 H 0.216 0.784 27 H 0.143 0.857 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.612 3.450 -9.036 10.716 hybrid contribution -1.781 -1.408 0.453 2.315 sum -6.393 2.043 -8.583 10.896 Atomic orbital electron populations 1.24305 0.95381 1.06017 1.03160 1.23646 0.94726 0.95528 0.97849 1.18814 0.83589 0.94922 0.93077 1.55368 1.71107 1.15553 1.19687 1.20147 1.34701 0.83811 1.00126 0.85855 1.25554 0.95768 1.00039 0.97122 1.70257 1.24741 1.39234 1.11593 0.85833 0.79429 0.79896 0.79141 1.19523 1.20722 1.18835 1.14238 0.80801 0.74129 0.74007 1.93328 1.59745 1.66475 1.77279 1.93371 1.84772 1.38633 1.81348 1.31270 1.31237 1.07628 1.07579 1.20482 0.94234 0.98745 0.94178 0.88866 1.21789 0.97658 1.01122 0.96211 1.21329 1.01132 0.99257 0.93323 1.30255 1.22993 1.10409 1.09801 1.08111 0.77952 0.76206 0.78033 1.93579 1.69309 1.66948 1.64321 1.93589 1.75801 1.39240 1.84686 1.30752 1.10927 1.13178 1.20743 0.78416 0.85667 0.89851 0.91184 0.86684 0.86539 0.89442 0.90536 0.89588 0.89553 0.85028 0.84913 0.83894 0.82645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.14 19.25 29.55 0.57 -4.58 16 2 C -0.12 -2.42 11.69 -37.12 -0.43 -2.86 16 3 C 0.22 4.80 5.43 -6.83 -0.04 4.76 16 4 N -0.80 -18.01 2.81 -62.78 -0.18 -18.19 16 5 C -0.24 -5.61 9.37 -15.06 -0.14 -5.75 16 6 H 0.12 2.83 7.26 -52.49 -0.38 2.45 16 7 C 0.03 0.61 4.98 -17.43 -0.09 0.52 16 8 N -0.82 -18.60 9.04 55.49 0.50 -18.10 16 9 Si 0.93 17.86 29.63 -169.99 -5.04 12.82 16 10 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 11 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 12 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 13 S 2.47 53.62 5.03 -107.50 -0.54 53.08 16 14 O -0.98 -23.02 14.45 -57.54 -0.83 -23.85 16 15 O -0.99 -23.51 16.54 -57.54 -0.95 -24.46 16 16 C -0.66 -11.31 5.60 37.16 0.21 -11.10 16 17 C -0.06 -0.82 2.02 -90.78 -0.18 -1.01 16 18 H 0.09 1.39 8.01 -51.93 -0.42 0.97 16 19 C -0.13 -1.39 4.93 -27.15 -0.13 -1.53 16 20 C -0.11 -1.01 5.73 -26.93 -0.15 -1.16 16 21 C -0.61 -5.29 6.35 37.18 0.24 -5.05 16 22 S 2.41 31.99 5.30 -107.50 -0.57 31.42 16 23 O -0.94 -15.18 18.10 -57.82 -1.05 -16.23 16 24 O -0.94 -15.47 17.95 -57.82 -1.04 -16.50 16 25 C -0.63 -9.07 5.41 37.21 0.20 -8.87 16 26 H 0.20 3.02 7.80 -54.10 -0.42 2.59 16 27 H 0.13 2.78 6.03 -51.93 -0.31 2.47 16 28 H 0.08 1.72 6.84 -51.93 -0.36 1.36 16 29 H 0.28 5.96 8.31 -40.82 -0.34 5.62 16 30 H 0.11 1.90 8.10 -51.92 -0.42 1.48 16 31 H 0.12 1.90 8.14 -51.92 -0.42 1.48 16 32 H 0.09 0.88 8.06 -51.93 -0.42 0.47 16 33 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.09 0.79 8.02 -51.93 -0.42 0.38 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.13 0.91 8.14 -51.92 -0.42 0.48 16 37 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.14 1.65 8.14 -51.93 -0.42 1.23 16 39 H 0.16 2.65 5.37 -51.92 -0.28 2.37 16 LS Contribution 343.54 15.07 5.18 5.18 Total: -1.00 -32.04 343.54 -9.56 -41.60 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.09 Total: 9.86 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 0.04 Total: -36.61 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.33 Total: -36.29 kcal Atomic # 8 Polarization: -77.18 SS G_CDS: -3.87 Total: -81.05 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.04 Total: 12.82 kcal Atomic # 16 Polarization: 85.60 SS G_CDS: -1.11 Total: 84.49 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.04 -9.56 -41.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475228517.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.013 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds