Wall clock time and date at job start Tue Mar 31 2020 19:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86805 * 119.99931 * 2 1 4 4 H 1.48503 * 109.46908 * 240.00272 * 3 2 1 5 5 H 1.48502 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46998 * 119.99884 * 3 2 1 7 7 C 1.39942 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00111 * 197.84453 * 7 2 1 9 9 C 1.41398 * 120.00019 * 17.85099 * 7 2 1 10 10 C 1.40720 * 120.24202 * 204.38542 * 9 7 2 11 11 C 1.37619 * 119.74291 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.24813 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.75133 * 179.97438 * 12 11 10 14 14 N 1.46502 * 109.46821 * 89.99949 * 13 12 11 15 15 S 1.65602 * 119.99488 * 165.00247 * 14 13 12 16 16 O 1.42101 * 106.40427 * 311.46346 * 15 14 13 17 17 O 1.42099 * 106.40270 * 178.53962 * 15 14 13 18 18 C 1.76208 * 107.21882 * 65.00297 * 15 14 13 19 19 C 1.38243 * 119.97403 * 269.72626 * 18 15 14 20 20 C 1.38200 * 120.02402 * 179.72575 * 19 18 15 21 21 C 1.38459 * 119.97517 * 0.56672 * 20 19 18 22 22 F 1.35095 * 120.02618 * 179.68138 * 21 20 19 23 23 C 1.38462 * 119.94670 * 359.70651 * 21 20 19 24 24 C 1.38198 * 119.97328 * 359.97438 * 23 21 20 25 25 C 1.38637 * 120.50227 * 0.25572 * 12 11 10 26 26 C 1.37619 * 120.24722 * 359.44635 * 25 12 11 27 27 H 0.97002 * 119.99935 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.12362 * 359.97438 * 10 9 7 29 29 H 1.07999 * 119.87366 * 180.02562 * 11 10 9 30 30 H 1.09002 * 109.46498 * 330.00475 * 13 12 11 31 31 H 1.08999 * 109.47215 * 210.00355 * 13 12 11 32 32 H 0.96991 * 120.00176 * 345.00543 * 14 13 12 33 33 H 1.08003 * 119.98717 * 359.97438 * 19 18 15 34 34 H 1.08004 * 120.01036 * 180.24831 * 20 19 18 35 35 H 1.07998 * 120.01082 * 179.97438 * 23 21 20 36 36 H 1.08001 * 119.98729 * 179.97438 * 24 23 21 37 37 H 1.07999 * 119.87722 * 179.70152 * 25 12 11 38 38 H 1.08006 * 120.12611 * 180.27406 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6964 -1.2126 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2872 9 6 1.3521 -2.4072 -0.3743 10 6 1.8259 -3.6498 0.0856 11 6 1.1799 -4.8068 -0.2861 12 6 0.0669 -4.7512 -1.1106 13 6 -0.6316 -6.0251 -1.5111 14 7 -1.6747 -6.3388 -0.5314 15 16 -2.8414 -7.4568 -0.8936 16 8 -3.3368 -7.1170 -2.1814 17 8 -3.6703 -7.5587 0.2561 18 6 -2.0357 -9.0144 -1.0656 19 6 -1.5651 -9.4158 -2.3020 20 6 -0.9280 -10.6348 -2.4369 21 6 -0.7715 -11.4592 -1.3356 22 9 -0.1546 -12.6538 -1.4677 23 6 -1.2483 -11.0586 -0.0989 24 6 -1.8792 -9.8363 0.0349 25 6 -0.4052 -3.5329 -1.5743 26 6 0.2213 -2.3628 -1.2106 27 1 -0.4850 0.8401 0.0004 28 1 2.6936 -3.6954 0.7270 29 1 1.5415 -5.7616 0.0660 30 1 0.0913 -6.8402 -1.5457 31 1 -1.0833 -5.8980 -2.4948 32 1 -1.6820 -5.8916 0.3293 33 1 -1.6919 -8.7748 -3.1619 34 1 -0.5569 -10.9464 -3.4021 35 1 -1.1272 -11.7010 0.7607 36 1 -2.2515 -9.5238 0.9993 37 1 -1.2703 -3.5017 -2.2201 38 1 -0.1508 -1.4145 -1.5694 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475432981.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:56 Heat of formation + Delta-G solvation = -81.035892 kcal Electronic energy + Delta-G solvation = -25064.803186 eV Core-core repulsion = 21106.002192 eV Total energy + Delta-G solvation = -3958.800994 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.42304 -39.25830 -37.90925 -37.16855 -35.79320 -35.10649 -33.41785 -31.60934 -31.10316 -30.10087 -29.36037 -26.61263 -23.70435 -23.48026 -23.45514 -21.10390 -20.19534 -19.54268 -18.41551 -17.73305 -17.40704 -17.20835 -16.89167 -16.07832 -15.88574 -15.42003 -15.04809 -14.68528 -14.14364 -14.07366 -14.01325 -13.71459 -13.66713 -13.55911 -13.00922 -12.69621 -12.45365 -12.26999 -12.05026 -12.03420 -11.97203 -11.57757 -11.54418 -11.18470 -11.10580 -11.07263 -10.62359 -10.52686 -9.78230 -9.58334 -9.52896 -9.47901 -9.30198 -9.15253 -7.58493 -7.47225 -6.88126 -4.47637 0.21283 0.52242 0.78555 2.56595 2.86140 2.96944 3.00915 3.02106 3.07507 3.35087 3.71418 3.80396 3.84310 4.12253 4.43204 4.44670 4.51654 4.79402 5.01549 5.24196 5.37989 5.43456 5.56379 5.59190 5.67597 5.68257 5.69978 6.01929 6.18065 6.30783 6.35420 6.36750 6.85753 6.95776 7.15136 7.21480 7.28024 7.49476 7.73197 7.93977 7.99167 8.17880 8.52390 8.77117 8.84997 10.05712 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.021900 B = 0.002497 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.243061 B =11212.059985 C =11872.455049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.116 3.884 10 C -0.230 4.230 11 C -0.071 4.071 12 C -0.236 4.236 13 C 0.180 3.820 14 N -1.104 6.104 15 S 2.691 3.309 16 O -0.958 6.958 17 O -0.965 6.965 18 C -0.687 4.687 19 C 0.010 3.990 20 C -0.176 4.176 21 C 0.150 3.850 22 F -0.133 7.133 23 C -0.177 4.177 24 C 0.011 3.989 25 C -0.080 4.080 26 C -0.169 4.169 27 H 0.283 0.717 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.421 0.579 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.091 0.909 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.218 -16.313 -2.244 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.250 4.250 11 C -0.090 4.090 12 C -0.240 4.240 13 C 0.057 3.943 14 N -0.866 5.866 15 S 2.779 3.221 16 O -0.948 6.948 17 O -0.955 6.955 18 C -0.772 4.772 19 C -0.010 4.010 20 C -0.195 4.195 21 C 0.130 3.870 22 F -0.111 7.111 23 C -0.197 4.197 24 C -0.008 4.008 25 C -0.099 4.099 26 C -0.189 4.189 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.257 0.743 33 H 0.170 0.830 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.169 0.831 37 H 0.109 0.891 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.303 -16.189 -2.525 16.715 hybrid contribution 1.139 0.145 0.456 1.236 sum -2.164 -16.044 -2.069 16.321 Atomic orbital electron populations 1.69811 1.07643 1.29645 1.33921 1.25957 0.94758 1.01494 0.92152 0.86339 0.80169 0.80034 0.80068 1.18725 1.20241 1.18933 1.19636 0.98195 0.91304 1.39536 0.90309 1.17671 0.90903 0.92048 0.88021 1.20959 1.03998 0.92829 1.07184 1.20386 0.95204 0.96484 0.96975 1.18837 1.01714 0.92512 1.10929 1.19966 0.87901 0.96241 0.90235 1.55784 1.46798 1.55761 1.28261 1.02044 0.73275 0.73050 0.73726 1.93581 1.77387 1.82292 1.41521 1.93574 1.64690 1.86703 1.50567 1.31296 1.20545 1.25241 1.00118 1.20881 0.89407 0.94625 0.96043 1.21294 1.03814 0.95585 0.98847 1.18002 0.92864 0.81208 0.94891 1.91540 1.79858 1.43063 1.96635 1.21283 1.02721 0.98848 0.96812 1.20829 0.90624 0.91410 0.97945 1.20596 0.97974 0.92535 0.98843 1.21326 0.99521 0.96831 1.01196 0.90564 0.88953 0.89377 0.92804 0.91047 0.74281 0.83004 0.83691 0.83767 0.83130 0.89107 0.86343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.47 10.95 55.55 0.61 -18.86 16 2 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 17.87 29.60 -169.99 -5.03 12.84 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.46 -11.55 9.05 -37.74 -0.34 -11.89 16 8 H 0.08 1.91 7.91 -52.49 -0.41 1.49 16 9 C 0.12 2.93 5.57 -106.82 -0.60 2.33 16 10 C -0.23 -5.24 9.80 -38.87 -0.38 -5.63 16 11 C -0.07 -1.43 9.67 -39.66 -0.38 -1.82 16 12 C -0.24 -4.58 5.30 -104.33 -0.55 -5.13 16 13 C 0.18 2.73 6.34 -5.19 -0.03 2.70 16 14 N -1.10 -15.34 5.99 -11.65 -0.07 -15.41 16 15 S 2.69 35.73 5.74 -107.50 -0.62 35.11 16 16 O -0.96 -15.06 16.74 -57.17 -0.96 -16.01 16 17 O -0.97 -14.83 17.28 -57.17 -0.99 -15.82 16 18 C -0.69 -7.66 5.95 -39.58 -0.24 -7.89 16 19 C 0.01 0.10 9.52 -39.59 -0.38 -0.28 16 20 C -0.18 -1.62 10.03 -39.51 -0.40 -2.01 16 21 C 0.15 1.46 7.30 -39.42 -0.29 1.17 16 22 F -0.13 -1.31 17.27 2.25 0.04 -1.27 16 23 C -0.18 -1.62 10.03 -39.51 -0.40 -2.01 16 24 C 0.01 0.11 9.52 -39.59 -0.38 -0.27 16 25 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 16 26 C -0.17 -4.15 8.70 -38.87 -0.34 -4.49 16 27 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 28 H 0.09 2.00 8.06 -52.49 -0.42 1.57 16 29 H 0.09 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 31 H 0.07 1.04 7.69 -51.93 -0.40 0.64 16 32 H 0.42 5.84 8.64 -34.47 -0.30 5.54 16 33 H 0.15 1.34 7.61 -52.48 -0.40 0.94 16 34 H 0.15 1.00 8.06 -52.48 -0.42 0.57 16 35 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.15 1.29 7.61 -52.49 -0.40 0.89 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.12 3.03 6.16 -52.48 -0.32 2.70 16 LS Contribution 348.75 15.07 5.26 5.26 Total: -1.00 -29.61 348.75 -10.83 -40.44 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -3.90 Total: 9.36 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: -5.17 Total: -35.63 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.54 Total: -34.27 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -1.95 Total: -31.83 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Atomic # 16 Polarization: 35.73 SS G_CDS: -0.62 Total: 35.11 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.61 -10.83 -40.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475432981.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.597 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds